Location and Species Matters: Variable Influence of the Environment on the Gene Flow of Imperiled, Native and Invasive Cottontails

The environment plays an important role in the movement of individuals and their associated genes among populations, which facilitates gene flow. Gene flow can help maintain the genetic diversity both within and between populations and counter the negative impact of genetic drift, which can decrease the fitness of individuals. Sympatric species can have different habitat preferences, and thus can exhibit different patterns of genetic variability and population structure. The specialist-generalist variation hypothesis (SGVH) predicts that specialists will have lower genetic diversity, lower effective population sizes (Ne), and less gene flow among populations. In this study, we used spatially explicit, individual-based comparative approaches to test SGVH predictions in two sympatric cottontail species and identify environmental variables that influence their gene flow. New England cottontail (Sylvilagus transitionalis) is the only native cottontail in the Northeast US, an early successional habitat specialist, and a species of conservation concern. Eastern cottontail (S. floridanus) is an invasive species in the Northeast US and a habitat generalist. We characterized each species’ genomic variation by developing double-digest Restriction-site Associated DNA sequence single nucleotide polymorphism markers, quantified their habitat with Geographic Information System environmental variables, and conducted our analyses at multiple scales. Surprisingly, both species had similar levels of genetic diversity and eastern cottontail’s Ne was only higher than New England cottontail in one of three subregions. At a regional level, the population clusters of New England cottontail were more distinct than eastern cottontail, but the subregional levels showed more geographic areas of restricted gene flow for eastern cottontail than New England cottontail. In general, the environmental variables had the predicted effect on each species’ gene flow. However, the most important environmental variable varied by subregion and species, which shows that location and species matter. Our results provide partial support for the SGVH and the identification of environmental variables that facilitate or impede gene flow can be used to help inform management decisions to conserve New England cottontail.

A Mathematical Model Supporting a Hyperpredation Effect in the Apparent Competition Between Invasive Eastern Cottontail and Native European Hare

In this work a mathematical model is built in order to validate on theoretical grounds field study results on a three-species system made of two prey, of which one is native and another one invasive, together with a native predator. Specifically, our results mathematically describe the negative effect on the native European hare after the introduction of the invasive Eastern cottontail, mediated by an increased predation rate by foxes. Two nonexclusive assumptions can be made: an increase in cottontail abundance would lead to a larger fox population, magnifying their predatory impact (“hyperpredation”) on hares; alternatively, cottontails attract foxes in patches where they live, which are also important resting sites for hares and consequently the increased presence of foxes results in a higher predation rates on hares. The model results support hyperpredation of increasing fox populations on native hares.

First estimates of survival and densities of invasive alien Eastern cottontail (Sylvilagus floridanus) in Italy: a Bayesian robust design approach

The Eastern cottontail (Sylvilagus floridanus) has become invasive in Central and Northern Italy, where it affects prey-predator dynamics between native species. Although many different studies explored survival rates and the density of cottontails in North America, no information is available for its invasive range. Between December 2003 and October 2005, a capture-recapture scheme for Eastern cottontails was enforced on the Orba River, Italy. We fitted a Bayesian version of the Pollock’s Closed Robust Design to estimate the survival of adult male and female cottontails (n=258) and their density in the study area. Adult cottontails showed minor seasonal differences in survival, with no clear differences between males and females. Densities varied seasonally, with females having higher densities (min = 80 individuals/km2; max = 553 individuals/km2) than males (min = 56 individuals/km2; max = 337 individuals/km2).Eastern cottontails are characterized by high survival and high densities, at least when adults, in their invaded range in Italy. Although densities are comparable to those reported in North America, our analysis focused on adult cottontails only and overall densities are certainly higher. Moreover, our estimates, obtained through a capture-recapture approach, were higher than those reported in previous studies from Italy based on nocturnal spotlight censuses. Spotlight transects are likely to underestimate cottontail densities, due to nocturnal habitat selection of cottontails, which might decrease their detectability.

Exotic Species and Autochthonous Parasites: Trichostrongylus Retortaeformis in Eastern Cottontail

Introduction: A parasite community is usually well adapted and specific to the host species they co-evolved with. Although exotic pathogens infecting autochthonous species have been documented, the infection of an alien species with native parasites is rare in lagomorphs. Trichostrongylus retortaeformis is a nematode parasite infecting the small intestine of domestic and wild lagomorphs in Europe. Methods: Thirty-two Eastern cottontails from a naturalized population in Italy were processed to describe the gastrointestinal parasite community. Results and discussions: T. retortaeformis is reported for the first time in the Eastern cottontail Sylvilagus floridanus introduced to Europe. The Eastern cottontail is an invasive lagomorph, living in sympatry with the autochthonous European brown hare in certain areas of Italy. This study provides new insights into the dynamics of parasite communities of native and alien lagomorph species in sympatric areas.

Sylvilagus obscurus (Lagomorpha: Leporidae)

Sylvilagus obscurus Chapman, Cramer, Dippenaar, and Robinson, 1992, commonly called the Appalachian cottontail, is distinguished from other syntopic leporids by its black spot between the ears, black fur along the anterior edge of the ears, and reddish-gray sides overlaid with a black wash. One of 22 species in the genus, S. obscurus is found across the Appalachian Mountains region, from Pennsylvania to northern Alabama. An inhabitant of habitats with dense woody understory cover such as early successional forests and mature forests with ericaceous shrubs, this rabbit is considered “Near Threatened,” with major threats that include habitat destruction, climate change, and competition with the eastern cottontail, Sylvilagus floridanus.

First estimates of survival and densities of invasive alien Eastern cottontail (Sylvilagus floridanus) in Italy: a capture-recapture approach

The Eastern cottontail (Sylvilagus floridanus) has become invasive in Central and Northern Italy, where it affects prey-predator dynamics between native species. Although many different studies explored survival rates and the density of cottontails in North America, no information is available for its invasive range. Between December 2003 and October 2005, a capture-recapture scheme for Eastern cottontails was enforced on the Orba River, Italy. We fitted an open-population Cormack-Jolly-Seber model to estimate survival of adult individuals (n=258) and their density in the study area. Adult cottontails showed a constant survival (phi = 0.84 ± 0.02) across the various sessions, as well as between individuals of different sexes. Capture probabilities and densities varied seasonally, with densities ranging between 2.06 ± 1.24 and 8.00 ± 4.60 cottontails/hectare, with an average of 4.72 individuals/hectare.Eastern cottontails are characterized by high survival and high densities, in their invaded range in Italy. Although densities are comparable to those reported in North America, our analysis focused on adult cottontails only and overall densities are certainly higher. Moreover, our estimates, obtained through a capture-recapture approach, were higher than those reported in previous studies from Italy that adopted nocturnal spotlight censuses. Spotlight transects are likely to underestimate cottontail densities, due to nocturnal habitat selection of cottontails, which might decrease their detectability.