Discovery and Chromosomal Location a Highly Effective Oat Crown Rust Resistance Gene Pc50-5

Crown rust, caused by Puccinia coronata f. sp. avenae, is one of the most destructive fungal diseases of oat worldwide. Growing disease-resistant oat cultivars is the preferred method of preventing the spread of rust and potential epidemics. The object of the study was Pc50-5, a race-specific seedling crown rust resistant gene, highly effective at all growth stages, selected from the differential line Pc50 (Avena sterilis L. CW 486-1 × Pendek). A comparison of crown rust reaction as well as an allelism test showed the distinctiveness of Pc50-5, whereas the proportions of phenotypes in segregating populations derived from a cross with two crown rust-susceptible Polish oat cultivars, Kasztan × Pc50-5 and Bingo × Pc50-5, confirmed monogenic inheritance of the gene, indicating its usefulness in oat breeding programs. Effective gene introgression depends on reliable gene identification in the early stages of plant development; thus, the aim of the study was to develop molecular markers that are tightly linked to Pc50-5. Segregating populations of Kasztan × Pc50-5 were genotyped using DArTseq technology based on next-generation Illumina short-read sequencing. Markers associated with Pc50-5 were located on chromosome 6A of the current version of the oat reference genome (Avena sativa OT3098 v2, PepsiCo) in the region between 434,234,214 and 440,149,046 bp and subsequently converted to PCR-based SCAR (sequence-characterized amplified region) markers. Furthermore, 5426978_SCAR and 24031809_SCAR co-segregated with the Pc50-5 resistance allele and were mapped to the partial linkage group at 0.6 and 4.0 cM, respectively. The co-dominant 58163643_SCAR marker was the best diagnostic and it was located closest to Pc50-5 at 0.1 cM. The newly discovered, very strong monogenic crown rust resistance may be useful for oat improvement. DArTseq sequences converted into specific PCR markers will be a valuable tool for marker-assisted selection in breeding programs.

Hidden Diversity of Crown Rust Resistance within Genebank Resources of Avena sterilis L.

The most widespread and damaging fungal disease of the oat plant is crown rust. Resistance to the crown rust pathogen, Puccinia coronata Cda. f. sp. avenae (Pca), at the seedling stage of Avena sterilis accessions from the Polish national genebank was characterised by five North American and Polish pathotypes of Pca of diverse pathogenicity. Pca pathogenicity was determined on a series of 34 differential lines carrying known seedling resistance genes. Seventy-five percent of studied accessions showed a heterogeneous infection pattern, 17% behaved as homogenous susceptibles, and 7% of tested genotypes could be unambiguously described as resistant. This study proved that A. sterilis accessions preserved in a genebank as complex populations could be a very valuable source of resistance to crown rust. The complexity of analysed populations was ascertained by a detailed variance analysis of transformed resistance/susceptibility data. We demonstrate here that hidden sources of resistance may be discovered in accessions with general susceptibility.

Preliminary screening of Avena sterilis L. for resistance to crown rust

The best source of crown rust resistance genes (Pc) in genus Avena is a wild hexaploid A. sterilis L. In this study, accessions of A. sterilis gathered from European and North American gene banks, originated from 21 countries were evaluated at the seedling stage for crown rust reaction using the host–pathogen test and two Puccinia coronata f. sp. avenae isolates. Of the 45 oat accessions analyzed, 12 were resistant to one crown rust race (3.2). Resistance to both pathotypes used in the study was observed in two of the accessions, first of which was collected in Libya (AVE 2532) and second in Portugal (CN 26036). Further research is required to evaluate the genetic background of the discovered resistance, however, obtained results provide a valuable first step in the identification of new promising crown rust resistance sources.

Characteristics of Resistance to Puccinia coronata f. sp. avenae in Avena fatua

Crown rust, caused by Puccinia coronata f. sp. avenae, is the most widespread and harmful fungal disease of oat. The best defense against the pathogen is use of cultivars with genetic resistance, which is effective, economic, and an environmentally friendly alternative to chemical control. However, the continuous evolution of the pathogen can rapidly overcome major gene resistance, creating an urgent need to identify new sources. Wild oat accessions have already proven to be valuable donors of many resistance genes, but the weed species Avena fatua remains underexploited. Its abundance across multiple environments and the frequent occurrence of herbicide-resistant populations demonstrate its ready ability to adapt to biotic and abiotic stresses; yet, surprisingly, there are no extensive studies which describe crown rust resistance occurrence in gene bank stocks of A. fatua. In this study, 204 accessions of A. fatua maintained in the collections of the United States Department of Agriculture (USDA) and Polish National Centre for Plant Genetic Resources were evaluated at the seedling stage for crown rust reaction using host–pathogen tests with five highly diverse and virulent races of P. coronata. Of tested genotypes, 85% showed a heterogeneous infection pattern, while 61% were susceptible or moderately susceptible to all races. Of the 79 resistant A. fatua accessions, seedling resistance to at least two P. coronata isolates was recognized within 19 accessions, with 13 displaying a homogeneously resistant phenotype to one or two races. Accessions showing multiple single seedling resistance to three or four isolates were observed. Based on the seedling reaction to isolates used in the study, 18 infection profiles (IP) were determined. Using UPGMA clustering, resistant accessions were divided into six main clusters encompassing samples with similar IPs. Twelve of 18 patterns allowed us to postulate the likely presence of novel crown rust resistance genes, whose origin was predominantly from Kenya or Egypt. Future work will clarify the genetic basis of the resistances observed here, as well as confirm their potential utility in breeding resistant oat cultivars.