Avoiding dead ends: the experimental evolution of constraint as adaptation to environmental variation in Saccharomyces cerevisiae

Environmental unpredictability results in the evolution of bet-hedging traits, which maximize long-term fitness but are, by definition, suboptimal over short time scales. However, because suboptimal traits are expected to be purged by selection in the shorter term, the persistence of bet hedging remains perplexing. Here, we test the hypothesis that bet hedging persists through the evolution of constraint on short-term adaptation. We experimentally evolve Saccharomyces cerevisiae across two sequential treatments in which the frequency of extreme heat shocks decreases. We predict that experimental evolution under lower frequency heat shocks will result in greater adaptive constraint, or “purge-resistant” bet hedging. Constraint is assayed as evolutionary persistence of heat shock tolerance (HST) under constant benign conditions. As predicted, we find the retention of HST only in lines evolved under reduced frequency detrimental conditions. Results help explain the evolution of bet hedging, and challenge the traditional view that evolutionary constraint is inherently maladaptive.

Adaptive Feedback Control in Human Reaching Adaptation to Force Fields

Sensorimotor adaptation is a central function of the nervous system, as it allows humans and other animals to flexibly anticipate their interaction with the environment. In the context of human reaching adaptation to force fields, studies have traditionally separated feedforward (FF) and feedback (FB) processes involved in the improvement of behavior. Here, we review computational models of FF adaptation to force fields and discuss them in light of recent evidence highlighting a clear involvement of feedback control. Instead of a model in which FF and FB mechanisms adapt in parallel, we discuss how online adaptation in the feedback control system can explain both trial-by-trial adaptation and improvements in online motor corrections. Importantly, this computational model combines sensorimotor control and short-term adaptation in a single framework, offering novel perspectives for our understanding of human reaching adaptation and control.

Peculiarities of foreign economic activity management of enterprises

Introduction. The paper is devoted to the problems of research of features and modern mechanisms of economic regulation of foreign economic activity of enterprises in Ukraine. The purpose of the paper is to improve the scientific and methodological basis for stimulating the development of foreign economic activity of enterprises and substantiation of the theoretical foundations of foreign economic activity of enterprises in order to further their development in the today's globalized world. Results. It is determined that one of the problems of foreign economic activity of enterprises is the problem of inefficient management system, lack of strategic and marketing approaches to enterprise management, and enterprises more often use the technique of short-term adaptation. An enterprise focused on the development of foreign economic activity should develop approaches to improve international marketing, especially in terms of making effective management decisions based on the processing of a significant amount of information data and assessing the factors of the international market environment. The main condition for the adaptation of enterprises to the rapidly changing external environment may be the formation of a system of strategic planning, which provides a more rational use of limited resources, promotes consistent development and implementation of management decisions, focuses on sustainable development in market conditions. The management staff should clearly formulate the principles of strategic research in order to intensify foreign trade in industrial enterprises, and most importantly – formed a marketing strategy for foreign trade. The main means of increasing the potential of foreign economic activity of enterprises are the formation of such economic conditions that would allow due to modernization of production to increase domestic production and services, introduce innovative technologies. Conclusion. In order to improve the foreign economic activity of Ukrainian enterprises, it is proposed to implement a policy aimed at increasing merchandise exports by introducing innovative developments to improve the quality of domestic products, which must meet international norms and standards necessary to create a sufficient level of competitiveness in domestic markets.

Effect of Shading Nets on Yield, Leaf Biomass and Petiole Nutrients of a Muscat of Alexandria Vineyard Growing under Hyper-Arid Conditions

Background: Currently, viticulture is exposed to extreme weather fluctuations and global warming, thus the implementation of short-term adaptation strategies to mitigate climate change impacts will be of a wide importance for the sustainability and competitiveness of wine industry. This research aimed to study the effect of shading nets on the viticultural performance of a Muscat of Alexandria vineyard growing under hyper-arid conditions. Methods: Three treatments were randomly arranged in the vineyard: (i) a control (without shading), (ii) a white shading net (25% of shading), and (iii) a black shading net (40% of shading). Subsequently, yield, vine vigor, berry composition, leaf biomass and petiole nutrient content were assessed. Results: Both shading nets decreased the incidence of solar radiation in vines. The application of white shading nets induced a high bunch weight and a higher number of berries per bunch than the black shading nets. Black shading nets increased pruning weight, decreased Ravaz index and induced a considerably accumulation of soluble solids in grapes. This treatment also decreased bunch weight and the number of berries per bunch, and increased rachis length compared to control. Black shading nets decreased Mg petiole content, leaf dry weight and leaf biomass at flowering compared to uncovered vines. Conclusions: Shading considerably affected the viticultural performance of Muscat of Alexandria vines growing under hyper-arid conditions, modifying yield, leaf biomass and petiole nutrients.

Overdominant and partially dominant mutations drive short-term adaptation in diploid yeast

Identification of adaptive targets in experimental evolution typically relies on extensive replication and allele reconstructions. An alternative approach is to directly assay all mutations in an evolved clone by generating pools of segregants that contain random combinations of the evolved mutations. Here, we apply this method to 6 clones isolated from 4 diploid populations that were clonally evolved for 2,000 generations in rich glucose medium. Each clone contains ~20-25 mutations relative to the ancestor. We derived intermediate genotypes between the founder and the evolved clones by bulk mating sporulated cultures of each evolved clone to a barcoded haploid version of the founder. We competed the barcoded segregants en masse and quantified the fitness of each barcode. We estimated average fitness effects of evolved mutations using barcode fitness and whole genome sequencing for a subset of segregants or time-course whole population whole genome sequencing. In contrast to our previous work in haploid populations, we find that diploids carry fewer evolved mutations with a detectable fitness effect (6%), contributing a modest fitness advantage (up to 5.4%). In agreement with theoretical expectations, reconstruction experiments show that all adaptive mutations manifest some degree of dominance over the ancestral allele, and most are overdominant. Competition assays under conditions that deviated from the evolutionary environment show that adaptive mutations are often pleiotropic.

RNA sequencing reveals metabolic and regulatory changes leading to more robust fermentation performance during short-term adaptation of Saccharomyces cerevisiae to lignocellulosic inhibitors

Background The limited tolerance of Saccharomyces cerevisiae to inhibitors is a major challenge in second-generation bioethanol production, and our understanding of the molecular mechanisms providing tolerance to inhibitor-rich lignocellulosic hydrolysates is incomplete. Short-term adaptation of the yeast in the presence of dilute hydrolysate can improve its robustness and productivity during subsequent fermentation. Results We utilized RNA sequencing to investigate differential gene expression in the industrial yeast strain CR01 during short-term adaptation, mimicking industrial conditions for cell propagation. In this first transcriptomic study of short-term adaption of S. cerevisiae to lignocellulosic hydrolysate, we found that cultures respond by fine-tuned up- and down-regulation of a subset of general stress response genes. Furthermore, time-resolved RNA sequencing allowed for identification of genes that were differentially expressed at 2 or more sampling points, revealing the importance of oxidative stress response, thiamin and biotin biosynthesis. furan-aldehyde reductases and specific drug:H+ antiporters, as well as the down-regulation of certain transporter genes. Conclusions These findings provide a better understanding of the molecular mechanisms governing short-term adaptation of S. cerevisiae to lignocellulosic hydrolysate, and suggest new genetic targets for improving fermentation robustness.

Methods of long-term and short-term adaptation for biometric image of keystroke dynamics

This article discusses one of the main problems of user identification by keyboard handwriting - short-term changes in the keystroke dynamics of users in connection with its psychophysical state, as well as changes over a long time associated with the formation of keystroke dynamics by a new user or when switching to a new device. A method for determining the phase of working capacity by the time characteristics of the keystroke dynamics is proposed.

Short-Term Adaptation Strategy Improved Xylitol Production by Candida Guilliermondii on Sugarcane Bagasse Hemicellulosic Hydrolysate

One of the major bottlenecks of the biotechnological production of xylitol by pentose-fermenting yeasts is the presence of toxic compounds in the hemicellulosic hydrolysates, which inhibit the bioconversion of xylose into xylitol. In this work, short-term adaptation was evaluated as a strategy to minimize the toxicity of the sugarcane bagasse hemicellulosic hydrolysate to Candida guilliermondii FTI 20037. Yeast adaptation improved xylose assimilation as well as xylitol production. The beneficial effects of adaptation were more pronounced in the hydrolysate with higher concentration of toxic compounds, leading to an increase of 62.5% in the xylitol volumetric productivity in comparison to the use of non-adapted cells. In this condition, it was also verified the reduction of glycerol production (about 102%), a by-product formed as consequence of cellular stress, indicating a greater tolerance of adapted cells to the toxicity of hydrolysates. Short-term adaptation proved to be a promising strategy to improve considerably the microbial tolerance and overcome the toxicity of hydrolysates.