Genomics-based discrimination of 2n gamete formation mechanisms in polyploids: a case study in nonaploid Diospyros kaki ‘Akiou’

Unreduced gametes (2n gametes), possessing double the haploid genome, whatever ploidy that happens to be, are a common source of ploidy variation in plant populations. First and second division restitution (FDR and SDR) are the dominant mechanisms of 2n gamete production; all else being equal, FDR gametes have a higher degree of heterozygosity, thus they are advantageous in breeding. The discrimination of these mechanisms from the consequence of hybridization is challenging, especially in higher polyploids, and usually requires information on centromere location. In this study, we propose a genotyping-based strategy to uncover the mechanisms of 2n gamete formation in progeny that has a higher ploidy than its parents. Simulation of 2n gamete production revealed that FDR and SDR pathways can be discriminated based on allele transmission patterns alone without information on centromere location. We applied this strategy to study the formation mechanism of a nonaploid Diospyros kaki ‘Akiou’, which was bred via hybridization between D. kaki hexaploid cultivars. The result demonstrated that ‘Akiou’ was derived from the fertilization of a normal female gamete by a 2n male gamete, and that this 2n gamete was produced through FDR. Consequently, the distinct duplex transmission pattern in the FDR gamete enabled us to infer the genomic characteristics of polyploid persimmon. The method could be tested only for the plant being polypoid, which allows for the ability to discriminate causes of 2n gamete formation using allele dosage in progeny, and will be useful in future studies of polyploid genomics.

A Review of Unreduced Gametes and Neopolyploids in Alfalfa: How to Fill the Gap between Well-Established Meiotic Mutants and Next-Generation Genomic Resources

The gene flow mediated by unreduced gametes between diploid and tetraploid plants of the Medicago sativa–coerulea–falcata complex is pivotal for alfalfa breeding. Sexually tetraploidized hybrids could represent the best way to exploit progressive heterosis simultaneously derived from gene diversity, heterozygosity, and polyploidy. Moreover, unreduced gametes combined with parthenogenesis (i.e., apomixis) would enable the cloning of plants through seeds, providing a unique opportunity for the selection of superior genotypes with permanently fixed heterosis. This reproductive strategy has never been detected in the genus Medicago, but features of apomixis, such as restitutional apomeiosis and haploid parthenogenesis, have been reported. By means of an original case study, we demonstrated that sexually tetraploidized plants maintain apomeiosis, but this trait is developmentally independent from parthenogenesis. Alfalfa meiotic mutants producing unreduced egg cells revealed a null or very low capacity for parthenogenesis. The overall achievements reached so far are reviewed and discussed along with the efforts and strategies made for exploiting reproductive mutants that express apomictic elements in alfalfa breeding programs. Although several studies have investigated the cytological mechanisms responsible for 2n gamete formation and the inheritance of this trait, only a very small number of molecular markers and candidate genes putatively linked to unreduced gamete formation have been identified. Furthermore, this scenario has remained almost unchanged over the last two decades. Here, we propose a reverse genetics approach, by exploiting the genomic and transcriptomic resources available in alfalfa. Through a comparison with 9 proteins belonging to Arabidopsis thaliana known for their involvement in 2n gamete production, we identified 47 orthologous genes and evaluated their expression in several tissues, paving the way for novel candidate gene characterization studies. An overall view on strategies suitable to fill the gap between well-established meiotic mutants and next-generation genomic resources is presented and discussed.

Sorghum bicolor x S. halepense interspecific hybridization is influenced by the frequency of 2n gametes in S. bicolor

Tetraploid johnsongrass [Sorghum halepense (L.) Pers.] is a sexually-compatible weedy relative of diploid sorghum [Sorghum bicolor (L.) Moench]. To determine the extent of interspecific hybridization between male sterile grain sorghum and johnsongrass and the ploidy of their progeny, cytoplasmic (CMS), genetic (GMS) and chemically induced male sterile lines of Tx623 and Tx631 were pollinated with johnsongrass pollen. At maturity 1% and 0.07% of the developing seeds of Tx623 and Tx631 respectively were recovered. Ninety-one percent of recovered hybrids were tetraploid and two percent were triploid, the tetraploids resulting from 2n gametes present in the sorghum female parent. Their formation appears to be genotype dependent as more tetraploids were recovered from Tx623 than Tx631. Because a tetraploid sorghum x johnsongrass hybrid has a balanced genome, they are male and female fertile providing opportunities for gene flow between the two species. Given the differences in 2n gamete formation among Tx623 and Tx631, seed parent selection may be one way of reducing the likelihood of gene flow. These studies were conducted in controlled and optimum conditions; the actual outcrossing rate in natural conditions is expected to be much lower. More studies are needed to assess the rates of hybridization, fitness, and fertility of the progeny under field conditions.

Interspecific Crosses and Backcrosses between Diploid Vaccinium darrowii and Tetraploid Southern Highbush Blueberry

Diploid Vaccinium darrowii Camp has been used in breeding tetraploid southern highbush blueberry (Vaccinium corymbosum L.) as a source of reduced chilling requirement, adaptation to hot, wet summers, and resistance to leaf diseases. V. darrowii in Florida is quite variable, but most crosses have involved only one V. darrowii clone, Fla. 4B. The use in breeding of a wider range of V. darrowii accessions would provide beneficial diversity in the blueberry cultivated gene pool. The purpose of this research was to determine the functional 2n gamete frequency of numerous V. darrowii genotypes when crossed with tetraploid V. corymbosum, and to study the pollen fertility and backcross ability of the interspecific (V. darrowii × V. corymbosum) hybrids to V. corymbosum. Crosses between diploid V. darrowii and tetraploid highbush blueberry cultivars had low fruit set compared with the V. darrowii × V. darrowii and highbush × highbush crosses. The unusually high number of hybrids per pollinated flower (HPF) in certain 4x-2x or 2x-4x crosses was attributed to high functional 2n gamete production in certain V. darrowii genotypes. Diploid Vaccinium fuscatum Aiton and diploid V. darrowii × V. fuscatum hybrids, when crossed with southern highbush blueberry cultivars, were equally productive of hybrids whether used as male or female parents. Variation in frequency of functional 2n gametes in V. darrowii, expressed as high HPF, was present within plants (megaspores vs. microspores) and among V. darrowii plants. Of the 114 interspecific (V. darrowii × V. corymbosum) hybrids studied, 106 had pollen stainability >50%. This indicated that most of these hybrids were tetraploid, because triploid blueberries, like most triploid plants, are highly sterile. Twenty-two V. darrowii × V. corymbosum hybrids were backcrossed to tetraploid highbush blueberry cultivars. Fruit set was variable, but large populations of vigorous hybrids were obtained. Lower fruit set was associated with hybrids that had lower pollen fertility. It should be possible to obtain plants of cultivar quality in a few generations of backcrosses.

(240) Cytological Analyses of BC1 Hybrids Derived from IMR 2n Gamete of Interspecific Hybrid Between L. auratum and L. henryi

Intergenomic F1 hybrids between L. auratum and L. henryi were made and backcrossed to Oriental hybrids to produce BC1 progenies. The F1 intergenomic hybrids produced a relevant frequency of 2n-gamete and fertile pollen. Analyses of pollen size, viability, and germination ability were checked under microscopic observation. GISH analysis confirmed that F1 intergenomic hybrids possess a set of chromosomes from both parents and showed an intermediate morphological phenotype. Twenty BC1 plants were generated by in vitro embryo rescue technique, and analyzed for genome composition by GISH. All plants were triploid, showing 12 from female parent (2× Oriental) and 24 from male (2× F1 hybrid). Based on the GISH analyses, 19 BC1 plants were derived from FDR 2n-gamete and only one plant was derived from IMR 2n-gamete of F1 hybrid. The genome composition of 19 BC1 plants from FDR 2n-gamete possess 12 Orientals + 12 L. auratum + 12 L. henryi chromosomes with some extent of homoeologous recombination between L. auratum and L. henryi. However, one plant from IMR 2n-gamete origin contains an odd number of parental chromosomes from F1 hybrid, showing 12 Oriental + 14 L. auratum + 10 L. henryi chromosomes. In this case, two L. auratum chromosomes recombinant with L. henryi chromosome segments were added and L. henryi counterpart chromosomes were deleted, respectively.