BioSamplr: An open source, low cost automated sampling system for bioreactors

Autosampling from bioreactors reduces error, increases reproducibility and offers improved aseptic handling when compared to manual sampling. Additionally, autosampling greatly decreases the hands-on time required for a bioreactor experiment and enables sampling 24 hrs a day. We have designed, built and tested a low cost, open source, automated bioreactor sampling system, the BioSamplr. The BioSamplr can take up to ten samples from a bioreactor at a desired sample interval and cools them to a desired temperature. The device, assembled from low cost and 3D printed components, is controlled wirelessly by a Raspberry Pi, and records all sampling data to a log file. The cost and accessibility of the BioSamplr make it useful for laboratories without access to more expensive and complex autosampling systems.

Chemical vs. Biological Crystals, all the Same?

Using microorganisms to mediate crystallisation of metals and minerals in open-culture bioreactors has potential to recover recyclable materials from dilute aqueous streams, but also to prevent their emission to the environment. Although this potential is already exploited in practice to some extent, biological crystallization for metal recovery is still largely a black box technology with limited understanding of the role of the microorganisms in the crystallization, and the differences with chemical crystallisation. Using biocrystallisation of scorodite (FeAsO4.2H2O) and sphalerite (ZnS) as examples we propose that the role of microorganisms strongly depends on established saturation state of the solution. For scorodite, microorganisms are used to exert control over the crystallization as their ferrous iron-oxidizing activity keeps the solution slightly oversaturated. Also, the oversaturation level is kept homogeneous because of continuous biological formation of the reactant ferrous iron throughout the solution. In continuous bioreactor experiments on which we reported previously, scorodite crystal sizes still increased after 72 days of bioreactor operation indicating that indeed crystal growth was favored over nucleation. On the other hand, in our experiments with zinc sulfide, crystallization proceeded in highly oversaturated solutions in a continuous sulfate reducing bioreactor fed with a zinc sulfate solution and H2/CO2 as electron donor and carbon source. The high oversaturation likely resulted in dominant primary nucleation in the bulk solution, with little or no control over crystal growth, even though agglomeration may still have occurred. This was exemplified by particle sizes which decreased in the bioreactor experiment and remained stable after already about 2 weeks of operation.

Inhibition of pathogenicSalmonellaenteritidisgrowth mediated byEscherichia colimicrocin J25 producing strains

For the first time, microcin-producing strains showing inhibitory activities against enteropathogen Salmonella enteritidis were isolated from poultry intestinal contents. Among the numerous strains isolated, two strains of Escherichia coli, named J02 and J03, showing the greatest activities against S. enteritidis, were studied. Biochemical tests and purification identified the main antagonist compound produced as microcin J25. In order to evaluate the protective potential of E. coli J02 and J03 against S. enteritidis infection, the ability of these strains to inhibit growth of S. enteritidis was investigated in mixed culture. A strong antagonist activity was obtained with a preculture phase of the active strain in minimal medium before incubation with S. enteritidis. In a bioreactor experiment simulating the chicken gastric and intestinal tract environment, a mixture of the two strains E. coli J02 and J03, provided an enhanced inhibitory effect. Microcinogenic strain activities were not affected by bile, pancreatic enzymes addition, or acidic conditions. These results suggest the relevant role of microcin-producing microorganisms in microbial intestinal ecology. To conclude, this study shows that microcin J25 strains could exert a beneficial protective effect against S. enteritidis growth in situ.Key words: microcin J25, Salmonella, mixed cultures.