Effects of natural and experimental drought on soil fungi and biogeochemistry in an Amazon rain forest

Microbiota are essential components of the soil, driving biogeochemical cycles. Fungi affect decomposition and biotic interactions with plants across scales. Climate projections suggest that extended dry seasons may transform sensitive rain forests into savanna-like vegetation, with consequent changes in biogeochemistry. Here we compare the impacts of natural seasonality with 14 years of partial throughfall exclusion in an Amazonian rain forest, focussing on soil fungal functional diversity, extracellular soil enzyme activities (EEA) and their implications for nutrient dynamics. Large changes in fungal diversity and functional group composition occur in response to drought, with a conspicuous increase in the abundance of dark-septate fungi and a decrease in fungal pathogens. The high seasonality of EEA in the control (non droughted) and suppression of seasonality in the drought treatment, together with an increased implied nitrogen demand in the dry season induced by experimental drought, suggest that the changed soil microbiota activity may signal a pending shift in the biogeochemical functioning of the forest.

Selenium Biofortification of Crop Food by Beneficial Microorganisms

Selenium (Se) is essential for human health, however, Se is deficient in soil in many places all around the world, resulting in human diseases, such as notorious Keshan disease and Keshin–Beck disease. Therefore, Se biofortification is a popular approach to improve Se uptake and maintain human health. Beneficial microorganisms, including mycorrhizal and root endophytic fungi, dark septate fungi, and plant growth-promoting rhizobacteria (PGPRs), show multiple functions, especially increased plant nutrition uptake, growth and yield, and resistance to abiotic stresses. Such functions can be used for Se biofortification and increased growth and yield under drought and salt stress. The present review summarizes the use of mycorrhizal fungi and PGPRs in Se biofortification, aiming to improving their practical use.

Shared mycorrhizae but distinct communities of other root-associated microbes on co-occurring native and invasive maples

Background Biological invasions are major drivers of environmental change that can significantly alter ecosystem function and diversity. In plants, soil microbes play an important role in plant establishment and growth; however, relatively little is known about the role they might play in biological invasions. A first step to assess whether root microbes may be playing a role in the invasion process is to find out if invasive plants host different microbes than neighbouring native plant species. Methods In this study we investigated differences in root associated microbes of native sugar maple (Acer saccharum Marsh.) and exotic Norway maple (A. platanoides L.) collected from a forested reserve in eastern Canada. We used microscopy to examine root fungi and high-throughput sequencing to characterize the bacterial, fungal and arbuscular mycorrhizal communities of both maple species over one growing season. Results We found differences in root associated bacterial and fungal communities between host species. Norway maple had a higher bacterial and fungal OTU (operational taxonomic units) richness compared to sugar maple, and the indicator species analysis revealed that nine fungal OTUs and three bacterial OTUs had a significant preference for sugar maple. The dominant bacterial phyla found on the roots of both maple species were Actinobacteria and Proteobacteria. The most common fungal orders associated with the Norway maple roots (in descending order) were Helotiales, Agaricales, Pleosporales, Hypocreales, Trechisporales while the Agaricales, Pleosporales, Helotiales, Capnodiales and Hypocreales were the dominant orders present in the sugar maple roots. Dark septate fungi colonization levels were higher in the sugar maple, but no differences in arbuscular mycorrhizal fungal communities and colonization rates were detected between maple species. Discussion Our findings show that two congeneric plant species grown in close proximity can harbor distinct root microbial communities. These findings provide further support for the importance of plant species in structuring root associated microbe communities. The high colonization levels observed in Norway maple demonstrates its compatibility with arbuscular mycorrhizal fungi in the introduced range. Plant-associated microbial communities can affect host fitness and function in many ways; therefore, the observed differences suggest a possibility that biotic interactions can influence the dynamics between native and invasive species.

MICROBIAL INTERACTIONS IN THE DEVELOPMENT OF THE BIOMASS OF GLIRICIDIA

ABSTRACT The objective of this work was to evaluate the interaction of microorganisms and phosphorus dosages in the development of gliricidia. The experimental design was completely randomized with six treatments (control, native microbial inoculant, and four arbuscular mycorrhizal fungi isolates: UFLA05 - Gigaspora albida, UFLA351 - Rhizoglomus clarum, UFLA372 - Claroideoglomus etunicatum, and UFLA401 - Acaulospora morrowiae), with four replicates. The parameters evaluated were: height plant, the number of branches, shoot and root dry mass matter, root length and volume, leaf phosphorus, mycorrhizal colonization, the number of spores of the arbuscular mycorrhizal fungi, the number of nodules of nitrogen fixing bacteria, and the presence of endophytic dark septate fungi, after 95 days of inoculation. The high mycorrhizal colonization of gliricidia does not guarantee an increase in biomass, which depends on the interaction of the arbuscular mycorrhizal fungi, the endophytic dark septate fungi, the nitrogen fixing bacteria, and the endophytic bacteria. Gliricidia was responsive to the inoculation of the native microbiota, UFLA372 and UFLA401. Mycorrhizal colonization by UFLA401 was influenced by the presence of nitrogen fixing bacteria. Gliricidia was not responsive to the inoculation of UFLA05 and UFLA351. The presence of the endophytic dark septate fungi did not inhibit mycorrhization and the formation of nodules of nitrogen fixing bacteria in gliricidia.

Micorriza arbuscular, Mucoromycotina y hongos septados oscuros en helechos y licófitas con distribución en México: una revisión global

Ferns and lycophytes are a group of vascular plants of interest to understand the evolution of mycorrhizal interactions; their preservation is of relevance for their multiple ecological relations. The record of different taxonomic groups of fungi associated with ferns and lycophytes is fragmentary, and the criteria for it identification is inconsistent, which hinders the understanding and determination of mycorrhizal status. The aim of this study was to determine the percentage of the species of ferns and lycophytes with distribution in Mexico, and with information of fungal interactions. A checklist of the presence of arbuscular mycorrhizal fungi (AMF), Mucoromycotina and dark septate fungi (DSF) associated with ferns and lycophytes was integrated through an exhaustive global literature search. In this study, mycorrhizal species was considered by the presence of arbuscules to differentiate with hyphal, vesicular and coils colonization. The study gathered a checklist of mycorrhizal occurrences of 27 families, 61 genus and 137 species of ferns and lycophytes, which covers 13.4 % of the species, 91 % of the genus and 77 % of the families distributed in Mexico. The 78.1 % of the species showed colonization, 56.2 % by AMF, 29.9 % by DSF and 0.72 % by Mucoromycotina fungi. From the total of the species, the higher presences of colonization were in terrestrial, epiphytic, saxicolous, and aquatic plants with 76.6 %, 33.3 %, 20 %, and 6.3 %, respectively. The families of ferns and lycophytes with the higher number of species colonized were Pteridaceae, Polypodiaceae, Aspleniaceae and Dryopteridaceae. The present study showed the widespread associations of AMF and DSF in ferns and lycophytes of Mexico. It is urgently needed to include ferns and lycophytes in studies focused on endomycorhizal interactions, since only 28 species (28 %) were studied in Mexican ecosystems. The majority of studies were focused on sporophytic face (80 %). Nonetheless, to understand the role that plays the mycorrhiza in the establishment of ferns and lycophytes, it is necessary to include the gametophytic face in ecological, molecular and physiological experimental studies. This information is important to implement conservation strategies, because a considerable number of ferns and lycophytes species, depend on these mycorrhizal associations for their growth and survival.

Endophytes – characteristics and possibilities of application in forest management

Endophytes are organisms that live within the plant tissue without usually causing any symptoms. In plants of natural ecosystems, endophytic fungi are in fact ubiquitous. This review summarizes research carried out on their biology emphasizing their functionality in terms of the host range, the colonization extent, the way of transmission between hosts and their influence on host fitness. The main focus will be on two classes of fungal endophytes, class 2 and 4 (Dark Septate Fungi), due to their potential for practical application in forestry. Raising awareness of the potential of endophytes to enhance the host’s resistance to pathogens, insects and anthropogenic disturbances is a key factor in developing applications for forest management.

Cheatgrass invasion alters the abundance and composition of dark septate fungal communities in sagebrush steppe

Invasive, non-native plant species can alter soil microbial communities in ways that contribute to their persistence. While most studies emphasize mycorrhizal fungi, invasive plants also may influence communities of dark septate fungi (DSF), which are common root endophytes that can function like mycorrhizas. We tested the hypothesis that a widespread invasive plant in the western United States, cheatgrass (Bromus tectorum L.), influenced the abundance and community composition of DSF by examining the roots and rhizosphere soils of cheatgrass and two native plant species in cheatgrass-invaded and noninvaded areas of sagebrush steppe. We focused on cheatgrass because it is negatively affected by mycorrhizal fungi and colonized by DSF. We found that DSF root colonization and operational taxonomic unit (OTU) richness were significantly higher in sagebrush (Artemisia tridentata Nutt.) and rice grass (Achnatherum hymenoides (Roem. & Schult.) Barkworth) from invaded areas than noninvaded areas. Cheatgrass roots had similar levels of DSF colonization and OTU richness as native plants. The community composition of DSF varied with invasion in the roots and soils of native species and among the roots of the three plant species in the invaded areas. The substantial changes in DSF we observed following cheatgrass invasion argue for comparative studies of DSF function in native and non-native plant species.

Colonización y estructura de la comunidad de hongos micorrízicos arbusculares en Alsophila firma (Cyatheaceae) en bosque mesófilo de montaña en Veracruz, México

<p><em>Alsophila firma</em> is a tree fern that is distributed mainly in tropical montane cloud forest (TMCF) and is considered as a threatened species. Arbuscular mycorrrhizal fungi (AMF) have been proposed as an alternative in rescue programs of endangered species. However, our knowledge about diversity of AMF and mycorrhizal status of the species of TMCF is limited. In Mexico TMCF shows different degrees of conservation because of fragmentation and land use change. In this study, we evaluated the level of colonization, richness and abundances of spores of AMF in three fragments with different conservation status: conserved (100 years), secondary vegetation (17 years) and disturbed. For this, soil samples and roots were collected from five individuals of <em>A. firma</em> per site, with at least 100m away from each other; a total of 100cm of roots were analysed per site. Root samples showed AMF and occasionally dark septate fungi (DSF) colonizations. For the overall study, 19 species of AMF were recorded: <em>Gigaspora</em> (7), <em>Acaulospora</em> (4), <em>Glomus</em> (4), <em>Funneliformis</em> (2),<em> Sclerocystis</em> (1) and <em>Scutellospora</em> (1). The dominant species in the three sites were<em> Funneliformis geosporum </em>and<em> Acaulospora scrobiculata. </em>The highest diversity (H’) and evenness (J’) (p&lt;0.05) were found in the conserved site (H’=1.7, J’=0.66), when compared to the secondary vegetation (H’=1.5, J’=0.61), and the disturbed site (H’=0.74, J’=0.41). Statistical analysis showed that the AMF degree of colonization was significantly higher (p&lt;0.05) in the conserved site; although, the disturbed site showed low richness and abundances of AMF, the degree of root colonization did not differ statistically (p&lt;0.05) with the secondary vegetation site. Chao2 (Richness estimation model) showed that the number of analysed samples were sufficient to represent the structure of the AMF communities with values &gt;90%. The present study confirmed that <em>A. firma</em> is a mycorrhizal species that exhibits high levels of colonization even in disturbed sites. We suggest that <em>F. geosporum</em> and <em>A. scrobiculata</em> may have the potential to inoculate the gametophyte and young sporophyte of <em>A. firma, </em>to support restoration programs, because of their abundances and high tolerance to disturbed sites.</p>