Analysis of body condition indices reveals different ecotypes of the Antillean manatee

Assessing the body condition of wild animals is necessary to monitor the health of the population and is critical to defining a framework for conservation actions. Body condition indices (BCIs) are a non-invasive and relatively simple means to assess the health of individual animals, useful for addressing a wide variety of ecological, behavioral, and management questions. The Antillean manatee (Trichechus manatus manatus) is an endangered subspecies of the West Indian manatee, facing a wide variety of threats from mostly human-related origins. Our objective was to define specific BCIs for the subspecies that, coupled with additional health, genetic and demographic information, can be valuable to guide management decisions. Biometric measurements of 380 wild Antillean manatees captured in seven different locations within their range of distribution were obtained. From this information, we developed three BCIs (BCI1 = UG/SL, BCI2 = W/SL3, BCI3 = W/(SL*UG2)). Linear models and two-way ANCOVA tests showed significant differences of the BCIs among sexes and locations. Although our three BCIs are suitable for Antillean manatees, BCI1 is more practical as it does not require information about weight, which can be a metric logistically difficult to collect under particular circumstances. BCI1 was significantly different among environments, revealing that the phenotypic plasticity of the subspecies have originated at least two ecotypes—coastal marine and riverine—of Antillean manatees.

The evolutionary history of manatees told by their mitogenomes

The manatee family encompasses three extant congeneric species: Trichechus senegalensis (African manatee), T. inunguis (Amazonian manatee), and T. manatus (West Indian manatee). The fossil record for manatees is scant, and few phylogenetic studies have focused on their evolutionary history. We use full mitogenomes of all extant manatee species to infer the divergence dates and biogeographical histories of these species and the effect of natural selection on their mitogenomes. The complete mitochondrial genomes of T. inunguis (16,851 bp), T. senegalensis (16,882 bp), and T. manatus (16,882 bp), comprise 13 protein-coding genes, 2 ribosomal RNA genes (rRNA - 12S and 16S), and 22 transfer RNA genes (tRNA), and (D-loop/CR). Our analyses show that the first split within Trichechus occurred during the Late Miocene (posterior mean 6.56 Ma and 95% HPD 3.81–10.66 Ma), followed by a diversification event in the Plio-Pleistocene (posterior mean 1.34 Ma, 95% HPD 0.1–4.23) in the clade composed by T. inunguis and T. manatus; T. senegalensis is the sister group of this clade with higher support values (pp > 0.90). The branch-site test identified positive selection on T. inunguis in the 181st position of the ND4 amino acid gene (LRT = 6.06, p = 0.0069, BEB posterior probability = 0.96). The ND4 gene encodes one subunit of the NADH dehydrogenase complex, part of the oxidative phosphorylation machinery. In conclusion, our results provide novel insight into the evolutionary history of the Trichechidae during the Late Miocene, which was influenced by geological events, such as Amazon Basin formation.

Genetic Connectivity of the West Indian Manatee in the Southern Range and Limited Evidence of Hybridization With Amazonian Manatees

The Antillean subspecies of the West Indian manatee is classified as endangered by the International Union for the Conservation of Nature (IUCN) Red List. In Brazil, the manatee population is listed as endangered with an estimated population size of 500–1,000. Historic hunting, recent habitat degradation, and fisheries bycatch have decreased the population size. The Amazonian manatee is listed as vulnerable by the IUCN with unknown population sizes within Brazil. The Antillean manatee occurs in sympatry with the Amazonian manatee in Brazil and hybridization has been previously indicated. To provide information on the genetic structure, diversity, and degree of hybridization in the sympatric zone near the Amazon River mouth, the mitochondrial DNA control region and 13 nuclear microsatellite markers were assessed on the two species. Samples were analyzed from the Antillean subspecies across its distribution in Brazil (n = 78) and from the Amazonian species (n = 17) at the Amazon River mouth and inland mainstem river. To assess the previously defined evolutionary significant units of Antillean manatees in the area, an additional 11 samples from Venezuela and Guyana were included. The Antillean manatee was found to be a single population in Brazil and had lower than average number of alleles (3.00), expected heterozygosity (0.34), and haplotype diversity (0.15) when compared to many other manatee populations. The low values may be influenced by the small population size and extended pressures from anthropogenic threats. Gene flow was identified with Venezuela/Guyana in admixed Antillean Brazil samples, although the two populations were found to be moderately divergent. The nuclear loci in Venezuela/Guyana Antillean manatee samples indicated high differentiation from the samples collected in the Amazon River (FST = 0.35 and RST = 0.18, p = 0.0001). No indication of nuclear hybridization was found except for a single sample, “Poque” that had been identified previously. The distribution of Antillean manatees in Brazil is extensive and the areas with unique habitat and threats would benefit from independent management and conservation actions. Gene flow, resulting in genetic diversity and long-term population stability, could be improved in the southern range through habitat restoration, and the establishments of travel corridors and protected areas, which are particularly important for successful parturition and neonatal calf survival.

Distribution of South American manatees, Trichechus manatus Linnaeus, 1758 and T. inunguis (Natterer, 1883) (Sirenia: Trichechidae)

South America is unique as it is home of two species of manatees: the West Indian manatee, Trichechus manatus, and the Amazonian manatee, T. inunguis. These species are easily identified by the belly skin coloration, the first is entirely gray whereas T. inunguis has a white mark pattern in the belly, and presence of nails in T. manatus, absent in T. inunguis. The morphology and the range of Trichechus species have been clearly established. However, we show that the belly skin coloration and the presence of nails on the pectoral flipper may be polymorphic. These findings prompted us to check all available information about the manatee. In view of lack of accurate data on manatee locations, we produced a gazetteer and a map of Trichechus spp. in South America using records obtained by regular monitoring of aquatic mammal strandings conducted by the Grupo de Estudos de Mamíferos Aquáticos da Amazônia of the Museu Paraense Emílio Goeldi, all available peer-reviewed data, reports, thesis, and newspaper files with photos showing diagnostic characters. These findings showed the need of improving the identification of these species before implementing conservation strategies. Finally, we present a complete report on the extant distribution of these species in South America.

Using Ecological Modelling to Assess the Long-Term Survival of the West-Indian Manatee (Trichechus manatus) in the Panama Canal

There is evidence of a thriving population of West-Indian manatee (Trichechus manatus) in the Panama Canal, although it is not clear if they are descendants of a small group of introduced manatees or if manatees have entered the Canal from the Caribbean through the Canal locks. This study describes the development and application of an individual-based model to assess the survival of a population of West-Indian manatees in the Panama Canal. In addition, we seek to determine the effects of isolation, predation, and mortality on long term survival. The model was parameterized using empirical data collected from the literature to every extent possible. A sensitivity analysis was performed to evaluate the model’s sensitivity to changes in the used parameters. Four scenarios were modeled to understand under which conditions the original population could have been maintained over time. Our results show that the manatee population would have collapsed quite quickly after its initial introduction and that only through the addition of several individuals into the lake over the years could the population have survived until the present day. Our results have important implications for the long-term conservation of this endangered species.