dna geometry
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scholarly journals Coupling between Histone Conformations and DNA Geometry in Nucleosomes on a Microsecond Timescale: Atomistic Insights into Nucleosome Functions

2016 ◽  
Vol 428 (1) ◽  
pp. 221-237 ◽  
Author(s):  
Alexey K. Shaytan ◽  
Grigoriy A. Armeev ◽  
Alexander Goncearenco ◽  
Victor B. Zhurkin ◽  
David Landsman ◽  
...  
Keyword(s):  
Dna Geometry

scholarly journals PDB4DNA: Implementation of DNA geometry from the Protein Data Bank (PDB) description for Geant4-DNA Monte-Carlo simulations

2015 ◽  
Vol 192 ◽  
pp. 282-288 ◽  
Author(s):  
E. Delage ◽  
Q.T. Pham ◽  
M. Karamitros ◽  
H. Payno ◽  
V. Stepan ◽  
...  
Keyword(s):  
Monte Carlo ◽  
Monte Carlo Simulations ◽  
Protein Data Bank ◽  
Data Bank ◽  
Dna Geometry

scholarly journals Role of sequence encoded κB DNA geometry in gene regulation by Dorsal

2011 ◽  
Vol 39 (22) ◽  
pp. 9574-9591 ◽  
Author(s):  
Nirotpal Mrinal ◽  
Archana Tomar ◽  
Javaregowda Nagaraju
Keyword(s):  
Gene Regulation ◽  
Dna Geometry

scholarly journals DnaB Helicase Activity Is Modulated by DNA Geometry and Force

2010 ◽  
Vol 99 (7) ◽  
pp. 2170-2179 ◽  
Author(s):  
Noah Ribeck ◽  
Daniel L. Kaplan ◽  
Irina Bruck ◽  
Omar A. Saleh
Keyword(s):  
Helicase Activity ◽  
Dnab Helicase ◽  
Dna Geometry

scholarly journals Bimodal Recognition of DNA Geometry by Human Topoisomerase IIα: Preferential Relaxation of Positively Supercoiled DNA Requires Elements in the C-Terminal Domain†

Biochemistry ◽  
2008 ◽  
Vol 47 (50) ◽  
pp. 13169-13178 ◽  
Author(s):  
A. Kathleen McClendon ◽  
Amanda C. Gentry ◽  
Jennifer S. Dickey ◽  
Marie Brinch ◽  
Simon Bendsen ◽  
...  
Keyword(s):  
Topoisomerase Iiα ◽  
Supercoiled Dna ◽  
Terminal Domain ◽  
Dna Geometry

Twist-dependent stacking energy of base-pair steps in B-DNA geometry: A density functional theory approach

2008 ◽  
Vol 108 (6) ◽  
pp. 1173-1180 ◽  
Author(s):  
Sudipta Samanta ◽  
Mukul Kabir ◽  
Biplab Sanyal ◽  
Dhananjay Bhattacharyya
Keyword(s):  
Density Functional Theory ◽  
Base Pair ◽  
Density Functional ◽  
Theory Approach ◽  
Functional Theory ◽  
Dna Geometry

scholarly journals Ability of Viral Topoisomerase II To Discern the Handedness of Supercoiled DNA:  Bimodal Recognition of DNA Geometry by Type II Enzymes†

Biochemistry ◽  
2006 ◽  
Vol 45 (38) ◽  
pp. 11674-11680 ◽  
Author(s):  
A. Kathleen McClendon ◽  
Jennifer S. Dickey ◽  
Neil Osheroff
Keyword(s):  
Topoisomerase Ii ◽  
Type Ii ◽  
Supercoiled Dna ◽  
Dna Geometry
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