Seaweed extract effect on arbuscular mycorrhizae spore in soil engineered by earthworm, and the soil effect on upland rice growth

Seaweed extract is known to contain nutrients and growth-regulating substances that affect soil biota, and a source of protection against pests and diseases. Earthworm, which is an example of a soil biota and playing the role of ecosystem engineer, has the ability to produce suitable land biostructures, for the inhabitation of arbuscular mycorrhizal fungi (AMF), which has an impact on upland rice growth. Therefore, this study aims to determine, (i) the effect of seaweed extract on the population of earthworms and spores of arbuscular mycorrhizal fungi, and (ii) the impact of the engineered soil on the growth of local upland rice varieties. Furthermore, the extract of seaweed, such as Kappapychus alvarezii, was divided into five concentration levels, namely 0%, 20%, 40%, 60%, and 80%. Each treatment was drenched into the soil from the cogongrass vegetated area, mixed with 20 Pheretima sp., and maintained for 49 days in the greenhouse. The result showed that the total difference in the earthworms’ concentration treatments was not significant. It also showed that the total AMF spores in the engineered soil products of 20% concentration was the highest. Based on treatment with the earthworm engineered soil products, the highest and lowest vegetative growth and yield components of upland rice were observed at the concentrations of 80% and 0%, respectively. In conclusion, the application of seaweed extract to the soil did not significantly reduce the earthworm population. The extract concentration of 20% also increased the total AMF spore in the engineered soil. Moreover, highly treated engineered soil products increased the growth and yield components of upland Kambowa rice on cogongrass soils.

Phylogenetic and Functional Diversity of Total (DNA) and Expressed (RNA) Bacterial Communities in Urban Green Infrastructure Bioswale Soils

ABSTRACT New York City (NYC) is pioneering green infrastructure with the use of bioswales and other engineered soil-based habitats to provide stormwater infiltration and other ecosystem functions. In addition to avoiding the environmental and financial costs of expanding traditional built infrastructure, green infrastructure is thought to generate cobenefits in the form of diverse ecological processes performed by its plant and microbial communities. Yet, although plant communities in these habitats are closely managed, we lack basic knowledge about how engineered ecosystems impact the distribution and functioning of soil bacteria. We sequenced amplicons of the 16S ribosomal subunit, as well as seven genes associated with functional pathways, generated from both total (DNA-based) and expressed (RNA) soil communities in the Bronx, NYC, NY, in order to test whether bioswale soils host characteristic bacterial communities with evidence for enriched microbial functioning, compared to nonengineered soils in park lawns and tree pits. Bioswales had distinct, phylogenetically diverse bacterial communities, including taxa associated with nutrient cycling and metabolism of hydrocarbons and other pollutants. Bioswale soils also had a significantly greater diversity of genes involved in several functional pathways, including carbon fixation (cbbL-R [cbbL gene, red-like subunit] and apsA), nitrogen cycling (noxZ and amoA), and contaminant degradation (bphA); conversely, no functional genes were significantly more abundant in nonengineered soils. These results provide preliminary evidence that urban land management can shape the diversity and activity of soil communities, with positive consequences for genetic resources underlying valuable ecological functions, including biogeochemical cycling and degradation of common urban pollutants. IMPORTANCE Management of urban soil biodiversity by favoring taxa associated with decontamination or other microbial metabolic processes is a powerful prospect, but it first requires an understanding of how engineered soil habitats shape patterns of microbial diversity. This research adds to our understanding of urban microbial biogeography by providing data on soil bacteria in bioswales, which had relatively diverse and compositionally distinct communities compared to park and tree pit soils. Bioswales also contained comparatively diverse pools of genes related to carbon sequestration, nitrogen cycling, and contaminant degradation, suggesting that engineered soils may serve as effective reservoirs of functional microbial biodiversity. We also examined both total (DNA-based) and expressed (RNA) communities, revealing that total bacterial communities (the exclusive targets in the vast majority of soil studies) were poor predictors of expressed community diversity, pointing to the value of quantifying RNA, especially when ecological functioning is considered.