lance nematode
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2021 ◽  
Author(s):  
Xinyuan Ma ◽  
J Antonio Baeza ◽  
Vincent P. Richards ◽  
Paula Agudelo

The Columbia lance nematode Hoplolaimus columbus has been reported frequently from North America due to its negative impact on agricultural production. In this study, for the first time, we sequenced the whole genome of a female specimen by using whole-genome-amplification and Illumina MiSeq. Data were <I>de novo </I> assembled to form scaffolds of 205.75 Mbp consisting of 118,374 contigs. The largest scaffold was 636,881 bp. BUSCO completeness was 66.6% (eukaryotic dataset), and over 8,000 unique genes were predicted by GeneMark-ES. A total of 61,855 protein sequences were predicted by AUGUSTUS, and 10,085 of them were annotated by PANNZER2 with at least one function. These data will provide valuable resources for studies focusing on pathogenicity and phylogenomics of plant-parasitic nematodes.


Nematology ◽  
2019 ◽  
Vol 21 (9) ◽  
pp. 923-935 ◽  
Author(s):  
Xinyuan Ma ◽  
Robert T. Robbins ◽  
Ernest C. Bernard ◽  
Claudia M. Holguin ◽  
Paula Agudelo

Summary Hoplolaimus smokyensis n. sp. is a new species of lance nematode collected in Great Smoky Mountains National Park, USA. Females of H. smokyensis n. sp. have a labial region characterised by six, occasionally five, annules. The basal lip annule is subdivided by about 24 longitudinal striae. The stylet averages 47 μm long with robust, tulip-shaped stylet knobs bearing anterior projections. The hemizonid is ca 4 μm anterior to the excretory pore. The lateral field is incompletely areolated and has four continuous incisures from the metacorpus region to the tail region. There are three pharyngeal gland nuclei. Vulval epiptygma are absent. The scutellate phasmids are located one anterior and one posterior to the vulva. The male is shorter than the female and the head region is higher and more rounded than that of the female. The bursa extends to the tail tip and the gubernaculum is large and protrusible and has titillae and a capitulum. Morphologically, H. smokyensis n. sp. is most similar to H. galeatus and H. stephanus, but can be distinguished by differences such as the number of annules and longitudinal striae on the lip region and morphometric values. Hoplolaimus smokyensis n. sp. is also genetically distinct from other species according to comparisons of ribosomal and mitochondrial DNA sequences. Phylogenetic analyses based on ribosomal and mitochondrial gene sequences suggest that H. smokyensis n. sp. is a lineage distinct from related Hoplolaimus species.


Plant Disease ◽  
2016 ◽  
Vol 100 (12) ◽  
pp. 2536-2536 ◽  
Author(s):  
G. P. Yan ◽  
A. Plaisance ◽  
D. Huang ◽  
Z. A. Handoo

2015 ◽  
Vol 95 ◽  
pp. 107-114 ◽  
Author(s):  
Claudia M. Holguin ◽  
John D. Mueller ◽  
Ahmad Khalilian ◽  
Paula Agudelo

2015 ◽  
Vol 5 (14) ◽  
pp. 2929-2944 ◽  
Author(s):  
Claudia M. Holguin ◽  
Juan A. Baeza ◽  
John D. Mueller ◽  
Paula Agudelo

Plant Disease ◽  
2013 ◽  
Vol 97 (10) ◽  
pp. 1389-1389 ◽  
Author(s):  
P. A. Donald ◽  
C. M. Holguin ◽  
P. A. Agudelo

The lance nematode Hoplolaimus magnistylus Robbins 1982 (3) was found for the first time in Tennessee in a cotton (Gossypium hirsutum L.) field (35°19.550′ N, 89°24.535′ W) in Fayette County in May 2011. In June of the same year, the species was also found in soil samples collected from a corn (Zea mays L.) field (36°15.736′ N, 88°51.121′ W) and a soybean (Glycine max L.) field (36°15.616′ N, 88°51.118′ W) in Weakley County, TN. Nematodes were extracted from the soil with a semi-automatic elutriator and further processed by sugar flotation-centrifugation. Population densities were between 30 and 50 individuals per 100 cm3 of soil in areas with noticeable stunting. Helicotylenchus sp. and Pratylenchus sp. were also present at less than 10 individuals per 100 cm3 of soil. Ten soybean seeds, cv. Hutcheson, were planted and inoculated with 50 H. magnistylus per 100 cm3 in steam-sterilized soil, and were maintained in a greenhouse. Forty-five days later, soybean plants exhibited at least one of the following symptoms: stunting and chlorosis, reduced root growth, and localized root lesions. Individual nematodes were handpicked and identified under a compound light microscope as H. magnistylus based on morphological and morphometric characteristics. The main diagnostic character for this species is the size of the stylet. In the populations collected, females had stylets ranging from 49 to 58 μm (mean 56 μm). Males and females were observed with head distinctly set off and massive cephalic framework, stylet long and robust and stylet knobs pointed anteriorly. The lateral field was areolated and had four incisures most of the body length, the excretory pore was prominent and located 190 μm (175 to 200 μm) from anterior end, hemizonid was large and located one or two annules posterior to the excretory pore, phasmids were large, conspicuous, and variable in position, and vulva was prominent and near midbody. This species is most similar to the more commonly reported H. galeatus, but differs from it in the longer stylet. Total DNA was extracted from single adults from each soil sample and the species-specific primers Hoc-1f (5′-AACCTGCTGCTGGATCATTA-3′) and HM-3r (5′-AGACTGGACGGCCAAAGTT-3′) designed by Bae et al. (1) were used to confirm the identification by amplification of a distinct 340-bp amplicon that differentiates this species from H. columbus, H. galeatus, H. concaudajuvencus, and H. stephanus. H. magnistylus was first described from soil samples taken from a corn and soybean field in Marianna, AR (3), and has been reported in association with soybean and corn in Louisiana and Mississippi (4). Robbins (4) reported that H. magnistylus was not a serious pest of irrigated cotton in Arkansas, but there are no other pathogenicity studies published for soybean, corn, or non-irrigated cotton. Other lance species, mainly H. galeatus and H. columbus, have been reported to cause serious damage to cotton in the Carolinas and Georgia (3). Previously, H. galeatus was reported in Tennessee by Bernard (2). Lance nematodes feed as migratory endo- and ectoparasites and injure the growing points of roots, causing stunting of plants. Because so little is known about the pathogenicity of this nematode, it becomes relevant to add our records of its known distribution in field crops in the United States. To our knowledge, this is the first report of H. magnistylus in Tennessee. References: (1) C. H. Bae et al. Nematology 11:471, 2009. (2) E. C. Bernard. University of Tennessee Bulletin 594, 1980. (3) R. T. Robbins. J. Nematol. 14:500, 1982. (4) R. T. Robbins. J. Nematol. 30(4S):590, 1998.


Plant Disease ◽  
2007 ◽  
Vol 91 (9) ◽  
pp. 1170-1179 ◽  
Author(s):  
D. M. Settle ◽  
J. D. Fry ◽  
G. A. Milliken ◽  
N. A. Tisserat ◽  
T. C. Todd

We compared photosynthesis and multispectral radiometry (MSR) measurements with visual quality ratings for assessment of feeding injury to creeping bentgrass caused by the lance nematode (Hoplolaimus galeatus) using artificially infested microplots and a naturally infested putting green. Nematode feeding resulted in negative visual and MSR effects on creeping bentgrass in microplots. Visual quality ratings were correlated more consistently with nematode densities than either individual MSR variables or factor models of MSR variables. Threshold estimates for H. galeatus population densities associated with unacceptable bentgrass quality in microplots varied widely by month and year. Similarly, the relationship between H. galeatus population density and turf health indicators (including MSR measurements, visual ratings, and net photosynthetic rate) varied with cultivar and management practice (irrigation frequency and mowing height) in the naturally infested putting green. Notably, negative effects of nematode feeding were not consistently associated with more stressful management practices, suggesting that stress avoidance is not a reliable deterrent to H. galeatus damage in creeping bentgrass. Damage thresholds for this nematode–host association are dynamic and should be used with caution.


Plant Disease ◽  
2006 ◽  
Vol 90 (1) ◽  
pp. 44-50 ◽  
Author(s):  
D. M. Settle ◽  
J. D. Fry ◽  
T. C. Todd ◽  
N. A. Tisserat

The effects of management practices and nematode population density on the seasonal fluctuationsin lance nematode (Hoplolaimus galeatus) populations in creeping bentgrass were studiedin a naturally infested experimental putting green and in artificially infested microplots. In general, H. galeatus populations increased from late spring through midsummer, declined in August, and increased again in the fall. Population increase in microplots was strongly density dependent, with final population densities inversely proportional to inoculum levels. Ectoparasitic populationsof H. galeatus in both studies were composed of adults and juveniles, whereas endoparasiticpopulations were almost exclusively juveniles. H. galeatus populations in the naturallyinfested site were aggregated spatially, but the aggregation was not temporally stable. Nematodepopulations were not affected by bentgrass cultivar selection or irrigation frequency.


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