Phosphate transporter PHT1;1 as a key determinant of phosphorus acquisition in Arabidopsis natural accessions

To understand the genetic basis in governing phosphorus (P) acquisition, we performed genome-wide association studies (GWAS) on a diversity panel of Arabidopsis thaliana by two primary determinants of P acquisition, phosphate (Pi)-uptake activity and PHOSPHATE TRANSPORTER 1 (PHT1) protein abundance. Association mapping revealed a shared significant peak on chromosome 5 (Chr5) where the PHT1;1/2/3 genes reside, suggesting a strong correlation between the regulation of Pi-uptake activity and PHT1 protein abundance. Genes encoding transcription factors, kinases, and a metalloprotease associated with both traits were also identified. Conditional GWAS followed by statistical analysis of genotype-dependent expression of PHT1;1 and transcription activity assays revealed an epistatic interaction between PHT1;1 and MYB DOMAIN PROTEIN 52 (MYB52) on Chr1. Analyses of F1 hybrids generated by crossing two subgroups of natural accessions carrying specific SNPs associated with PHT1;1 and MYB52 further revealed the strong effects of potential variants on PHT1;1 expression and Pi uptake activity. Notably, the soil P contents in A. thaliana habitats were found to coincide with PHT1;1 haplotype, underscoring how fine-tuning of the activity of P acquisition by natural variants allows plants to adapt to their environments. This study sheds light on the complex regulation of P acquisition and offers a framework to systematically assess the effectiveness of GWAS approaches in the study of quantitative traits.

Trade-Offs in Phosphorus Acquisition Strategies of Five Common Tree Species in a Tropical Forest of Puerto Rico

Tree species that are successful in tropical lowlands have different acquisition strategies to overcome soil phosphorus (P) limitations. Some of these strategies belowground include adjustments in fine-root traits, such as morphology, architecture, association with arbuscular mycorrhizal fungi, and phosphatase activity. Trade-offs among P-acquisition strategies are expected because of their respective carbon cost. However, empirical evidence remains scarce which hinders our understanding of soil P-acquisition processes in tropical forests. Here, we measured seven fine-root functional traits related to P acquisition of five common tree species in three sites of the Luquillo Experimental Forest in Puerto Rico. We then described species-specific P-acquisition strategies and explored the changes in fine-root trait expression from 6 months before to 6 months after two consecutive hurricanes, Irma and María, passed over the island. We found that variations in root trait expression were driven mainly by the large interspecific differences across the three selected sites. In addition, we revealed a trade-off between highly colonized fine roots with high phosphatase activity and fine roots that have a high degree of branching. Furthermore, the former strategy was adopted by pioneer species (Spathodea campanulata and Cecropia schreberiana), whereas the latter was adopted by non-pioneer species (mostly Dacryodes excelsa and Prestoea montana). Additionally, we found that root trait expression did not change comparing 6 months before and after the hurricanes, with the exception of root phosphatase activity. Altogether, our results suggest a combination of structural and physiological root traits for soil P acquisition in P-poor tropical soils by common tropical tree species, and show stability on most of the root trait expression after hurricane disturbances.

Common Mycorrhizal Networks Asymmetrically Contribute to Increased N and P Acquisition by Millet/Chickpea Mixture

Aim Cereal/legume intercropping is known to increase yield, partly because of increased nitrogen (N) and phosphorus (P) acquisition. The aim of this paper was to investigate the role of common mycorrhizal networks (CMNs) in overyielding by the crop species mixture and to find out if the effect of a CMN depends on which of the two species was colonized by AM fungi.Methods Microcosms with two compartments were used, separated by a 30-μm nylon mesh. Both compartments contained either chickpea or millet, in monoculture or mixed. One or none of the two compartments was inoculated with the AMF species Funneliformis mosseae. The plant in the inoculated compartment was referred to as the AMF donor, and the plant in the neighboring, non-inoculated compartment as the AMF receiver. Results Inoculation in one compartment resulted in mycorrhiza formation in the other compartment, providing evidence for the formation of CMNs. Inoculation of chickpea in the mixture increased N and P acquisition and biomass of both chickpea (AMF donor) and millet (AMF receiver), whereas inoculation of millet increased biomass of chickpea (AMF receiver) only, but did not increase N or P acquisition by any of the two species. Chickpea as AMF donor had higher numbers of phosphate-solubilizing bacteria in its rhizosphere compared to chickpea as receiver. The shoot N:P ratio of chickpea as AMF donor was lower than as receiver. Conclusion Our study demonstrated asymmetry in nutrient gains by a mixture of cereal and a legume, dependent on which plant species was the AMF donor or receiver. This suggests that initiating mycorrhizal networks by legumes in intercropping could be an important factor contributing to the magnitude of the intercropping effect.

Novel Genes and Genetic Loci Associated With Root Morphological Traits, Phosphorus-Acquisition Efficiency and Phosphorus-Use Efficiency in Chickpea

Chickpea—the second most important grain legume worldwide—is cultivated mainly on marginal soils. Phosphorus (P) deficiency often restricts chickpea yields. Understanding the genetics of traits encoding P-acquisition efficiency and P-use efficiency will help develop strategies to reduce P-fertilizer application. A genome-wide association mapping approach was used to determine loci and genes associated with root architecture, root traits associated with P-acquisition efficiency and P-use efficiency, and any associated proxy traits. Using three statistical models—a generalized linear model (GLM), a mixed linear model (MLM), and a fixed and random model circulating probability unification (FarmCPU) —10, 51, and 40 marker-trait associations (MTAs), respectively were identified. A single nucleotide polymorphism (SNP) locus (Ca1_12310101) on Ca1 associated with three traits, i.e., physiological P-use efficiency, shoot dry weight, and shoot P content was identified. Genes related to shoot P concentration (NAD kinase 2, dynamin-related protein 1C), physiological P-use efficiency (fasciclin-like arabinogalactan protein), specific root length (4-coumarate–CoA ligase 1) and manganese concentration in mature leaves (ABC1 family protein) were identified. The MTAs and novel genes identified in this study can be used to improve P-use efficiency in chickpea.

Mycorrhiza-improved P acquisition of host plants: A mini-review

As a beneficial endophytic fungus, arbuscular mycorrhizal fungi (AMF) are widely distributed in nature and can symbiotically grow with approx. 80% of terrestrial plants, helping host plants to grow and develop with increased tolerance to various stresses. One of the most important functions of AMF is to promote the uptake of P from the soil by the host plant. The available findings explain the role of mycorrhizal fungi. For example, AMF increase the phosphorus uptake area of plant roots by improving the root architecture, and the extraradical mycelium can extend beyond the phosphorus-deprived areas that are inaccessible to the root, helping to expand new phosphorus sources. AMF also increase the secretion of phosphatases and organic acids in plant roots to improve the soil environment for accelerating the conversion of insoluble phosphorus. The phosphorus transporter protein genes expression is induced by AMF to enhance host P acquisition. The review briefly outlines these potential mechanisms and suggests outlooks for future research.