Phylogenetic Analysis of 16S rRNA Genes and PCR Analysis of the nec1 Gene from Streptomyces spp. Causing Common Scab, Pitted Scab, and Netted Scab in Finland

The sequences of the 16S rRNA genes (nucleotides 29 to 1,521) from various Streptomyces strains pathogenic to potato were compared. These included 10 pathogenic Streptomyces strains isolated from potato scab lesions in Finland, the type strains of S. aureofaciens NRRL 2209T and S. lydicus ATCC 25470T, ‘S. griseus subsp. scabies’ ATCC 10246, and two S. griseus strains that were originally deposited to the collection as pathogens. The nucleotide sequence (>94.5% sequence identity [SI]) and length (1,469 to 1,481 nucleotides) of the analyzed region varied. Phylogenetic analysis of 16S rRNA genes placed Finnish strains into three species, supported by previously characterized morphological and physiological traits. Six Finnish strains, including two strains that deviated from the others in one trait (no spiral sporophores or D-xylose utilization), had identical 16S rRNA genes and were identified as S. scabies (99.9% SI to S. scabies ATCC 49173). Three Finnish strains were identified as S. turgidiscabies, a species previously described only in Japan (99.9% SI to S. turgidiscabies ATCC 700248). Finnish strain 317 and S. aureofaciens NRRL 2209 (99.8% SI) were placed in a distinct phylogenetic cluster together with Kitosatospora spp., which suggests that S. aureofaciens may belong to the recently revived genus Kitosatospora. In pathogenicity tests, S. scabies caused characteristic symptoms of common scab, S. turgidiscabies caused mainly pitted scab, and S. aureofaciens caused netted scab and necrotic lesions on stolons of potato cultivars Bintje and Matilda in the greenhouse. The nec1 gene and the intergenic region between nec1 and the 5′ transposase pseudogene ORFtnp were successfully amplified by polymerase chain reaction from S. scabies ATCC 49173 and the pathogenic Finnish strains of S. scabies, but not from a nonpathogenic strain of S. scabies, three pathogenic and two nonpathogenic strains of S. turgidiscabies, and S. aureofaciens.

Occurrence of common scab in potato tubers after foliar treatment with glycinebetaine under glasshouse conditions

A single foliar spray with 2.5 mM glycinebetaine (GB) was applied on potato (Solatium tuberosum L.) cvs. Matilda, Sabina and Saturna grown in a sand bed infested with Streplomyces scabies (Thaxter) Waksman & Henrici at tuber initiation. A period of drought was maintained after GB treatment to enhance scab infection. Logit models were used to compare scab incidence in all harvested tubers (n = 622) and the type of scab in the symptomatic tubers (n = 382), whereas the tuber surface areas covered with scab lesions were compared using ANOVA. A 10 g increase in tuber weight increased the odds of scab incidence by 11.3%. Scab incidence was lowest in Sabina and highest in Matilda. Raised scab and superficial scab were common in all cultivars, but pitted scab developed only in a few tubers of Sabina and Matilda. Among the scabby tubers, the incidence of raised scab was highest in Sabina and lowest in Saturna. The mean surface area covered with scab was 32.8% in Matilda, 11.7% in Saturna and 7.5% in Sabina. Treatment with GB slightly reduced the severity of scab symptoms, as shown by the reduction in the proportion of tubers with raised scab among the scabby tubers (odds 0.60). No effect on the incidence of scab or the tuber area covered with scab lesions was detected following GB treatment.