Insights into Autotrophic Activities and Carbon Flow in Iron-Rich Pelagic Aggregates (Iron Snow)

Pelagic aggregates function as biological carbon pumps for transporting fixed organic carbon to sediments. In iron-rich (ferruginous) lakes, photoferrotrophic and chemolithoautotrophic bacteria contribute to CO2 fixation by oxidizing reduced iron, leading to the formation of iron-rich pelagic aggregates (iron snow). The significance of iron oxidizers in carbon fixation, their general role in iron snow functioning and the flow of carbon within iron snow is still unclear. Here, we combined a two-year metatranscriptome analysis of iron snow collected from an acidic lake with protein-based stable isotope probing to determine general metabolic activities and to trace 13CO2 incorporation in iron snow over time under oxic and anoxic conditions. mRNA-derived metatranscriptome of iron snow identified four key players (Leptospirillum, Ferrovum, Acidithrix, Acidiphilium) with relative abundances (59.6–85.7%) encoding ecologically relevant pathways, including carbon fixation and polysaccharide biosynthesis. No transcriptional activity for carbon fixation from archaea or eukaryotes was detected. 13CO2 incorporation studies identified active chemolithoautotroph Ferrovum under both conditions. Only 1.0–5.3% relative 13C abundances were found in heterotrophic Acidiphilium and Acidocella under oxic conditions. These data show that iron oxidizers play an important role in CO2 fixation, but the majority of fixed C will be directly transported to the sediment without feeding heterotrophs in the water column in acidic ferruginous lakes.

Taxonomic and functional analyses of intact microbial communities thriving in extreme, astrobiology-relevant, anoxic sites

Background Extreme terrestrial, analogue environments are widely used models to study the limits of life and to infer habitability of extraterrestrial settings. In contrast to Earth’s ecosystems, potential extraterrestrial biotopes are usually characterized by a lack of oxygen. Methods In the MASE project (Mars Analogues for Space Exploration), we selected representative anoxic analogue environments (permafrost, salt-mine, acidic lake and river, sulfur springs) for the comprehensive analysis of their microbial communities. We assessed the microbiome profile of intact cells by propidium monoazide-based amplicon and shotgun metagenome sequencing, supplemented with an extensive cultivation effort. Results The information retrieved from microbiome analyses on the intact microbial community thriving in the MASE sites, together with the isolation of 31 model microorganisms and successful binning of 15 high-quality genomes allowed us to observe principle pathways, which pinpoint specific microbial functions in the MASE sites compared to moderate environments. The microorganisms were characterized by an impressive machinery to withstand physical and chemical pressures. All levels of our analyses revealed the strong and omnipresent dependency of the microbial communities on complex organic matter. Moreover, we identified an extremotolerant cosmopolitan group of 34 poly-extremophiles thriving in all sites. Conclusions Our results reveal the presence of a core microbiome and microbial taxonomic similarities between saline and acidic anoxic environments. Our work further emphasizes the importance of the environmental, terrestrial parameters for the functionality of a microbial community, but also reveals a high proportion of living microorganisms in extreme environments with a high adaptation potential within habitability borders.

Application of the Flotation Tailings as an Alternative Material for an Acid Mine Drainage Remediation: A Case Study of the Extremely Acidic Lake Robule (Serbia)

Flotation tailings rich in carbonate minerals from the tailings deposit of the copper mine Majdanpek (Serbia) were applied for neutralization of the water taken from the extremely acidic Lake Robule (Bor, Serbia). Tests conducted in Erlenmeyer flasks showed that after neutralization of the lake water to pH 7, over 99% of aluminum (Al), iron (Fe), and copper (Cu) precipitated, as well as 92% of Zn and 98% of Pb. In order to remove residual Mn and Ag, the water was further treated with NaOH. After treatment with NaOH, all concentrations of the metals in the lake water samples were below discharge limits for municipal wastewater according to the national legislation of the Republic of Serbia. The results of this work suggest that mining waste could be used for active neutralization of the acid mine drainage. The use of the mining waste instead of lime could reduce the costs of the active treatment of the acid mine drainage.

Selective precipitation of schwertmannite in a stratified acidic pit lake of Iberian Pyrite Belt

Selective precipitation of schwertmannite was identified in the water column of a chemically stratified acidic lake (pH 2.0 2.5). A set of analytical techniques was used to identify accurately the mineral phase (X-ray diffraction, X-ray fluorescence spectrometry, scanning electron microscopy coupled with energy dispersive spectroscopy). The lake has two clearly differentiated layers: a thin superficial layer that extends to ∼2 m in depth with less dissolved solid content and, therefore, lower density, which contrasts with a thicker lower layer that extends to 34 m in depth. The upper layer is strongly influenced by climatic factors, triggering dilution (rainfall), concentration (dry season) and intense seasonal thermal fluctuations, while the lower layer is more compositionally and thermally stable.Schwertmannite precipitate was initially observed only in the upper layer, adhered to a plastic buoy and the anchor line. The latter was confirmed through a test involving a precipitation device that consisted of maintaining a series of plastic plates at different depths over a period of several months. Only the plates located in the upper layer became covered with precipitate, whereas the plates that were submerged in the lower layer remained clean. These observations clearly differed from the saturation indices of schwertmannite (SIsch) calculated usingPHREEQCand using Bighamet al.(1996) or Kawano and Tomita (2001) solubility products. Schwertmannite would not precipitate in the lake with the former but would precipitate in both layers with the latter. It is the constant provided by Yuet al.(1999) that makes SIschin both layers approach the observed behaviour: SIsch>0 displays oversaturation in the upper layer while SIsch<0 displays undersaturation in the lower layer. The value of the product of solubility that better adjusts to this situation is log Ksch= 9.5 10. Using the method by Yuet al.(1999) to establish the apparent solubility, a range of log Kschvalues was defined between 10.5 and 11.5 for the system studied.

Bioleaching of copper from old flotation tailings samples (Copper Mine Bor, Serbia)

Bioleaching of samples taken from depths of 10, 15, and 20 meters from old flotation tailings of the Copper Mine Bor was conducted in shaken flasks using extremely acidic water of Lake Robuleas lixiviant. Yield of copper after five weeks of the bioleaching experiment was 68.34?1.21% for 15 m sample, 72.57?0.57% for 20 m sample and 97.78?5.50% for 10 m sample. The obtained results were compared to the results of acid leaching of the same samples and it was concluded that bioleaching was generally more efficient for the treatment of samples taken from depths of 10 m and 20 m. The content of pyrite in the 20 m sample, which contained the highest amount of this mineral, was reduced after bioleaching. Benefits of this approach are: recovery of substantial amounts of copper, reducing the environmental impact of flotation tailings and the application of abundant and free water from the Robule acidic lake as lixiviant. Results of the experiment showed that bioleaching can be more efficient than acid leaching for copper extraction from flotation tailings with higher sulfide contents.