polypeptide conformation
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2020 ◽  
Author(s):  
David Cheung

<div>The formation of dense, linear protein arrays (fibrils) is the hallmark of a number of degenerative</div><div>diseases, such as Alzheimer’s and type-2 diabetes. Protein fibrils have also attracted interest</div><div>as building blocks for new materials. It has long been recognised that surfaces can affect the</div><div>fibrillation process. Recent work on the model fibril forming protein human islet polypeptide</div><div>(hIAPP) has shown that while the protein concentration is highest at hydrophobic surfaces, the</div><div>rate of fibril formation is lower than on other surfaces. To understand this, replica exchange</div><div>molecular dynamics simulations were used to investigate the conformations that hIAPP adopts on</div><div>surfaces of di↵erent hydrophobicity. The hydrophobic surface stabilizes ↵-helical structures, which</div><div>are quite di↵erent to those found on the hydrophilic surface and in bulk solution. There is also</div><div>a greatly reduced conformational ensemble on the hydrophobic surface, due to long-lived contacts</div><div>between hydrophobic residues on the protein and the surface. This new microscopic information</div><div>will help us determine the mechanism of the enhancement of fibril formation on surfaces.</div>


2020 ◽  
Author(s):  
David Cheung

<div>The formation of dense, linear protein arrays (fibrils) is the hallmark of a number of degenerative</div><div>diseases, such as Alzheimer’s and type-2 diabetes. Protein fibrils have also attracted interest</div><div>as building blocks for new materials. It has long been recognised that surfaces can affect the</div><div>fibrillation process. Recent work on the model fibril forming protein human islet polypeptide</div><div>(hIAPP) has shown that while the protein concentration is highest at hydrophobic surfaces, the</div><div>rate of fibril formation is lower than on other surfaces. To understand this, replica exchange</div><div>molecular dynamics simulations were used to investigate the conformations that hIAPP adopts on</div><div>surfaces of di↵erent hydrophobicity. The hydrophobic surface stabilizes ↵-helical structures, which</div><div>are quite di↵erent to those found on the hydrophilic surface and in bulk solution. There is also</div><div>a greatly reduced conformational ensemble on the hydrophobic surface, due to long-lived contacts</div><div>between hydrophobic residues on the protein and the surface. This new microscopic information</div><div>will help us determine the mechanism of the enhancement of fibril formation on surfaces.</div>


2020 ◽  
Vol 124 (14) ◽  
pp. 2961-2972
Author(s):  
Piotr Batys ◽  
Maria Morga ◽  
Piotr Bonarek ◽  
Maria Sammalkorpi

ACS Nano ◽  
2018 ◽  
Vol 12 (7) ◽  
pp. 6612-6619 ◽  
Author(s):  
Georg Ramer ◽  
Francesco Simone Ruggeri ◽  
Aviad Levin ◽  
Tuomas P. J. Knowles ◽  
Andrea Centrone

2017 ◽  
Vol 8 (1) ◽  
Author(s):  
Ziyuan Song ◽  
Rachael A. Mansbach ◽  
Hua He ◽  
Kuo-Chih Shih ◽  
Ryan Baumgartner ◽  
...  

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