Recent Advances and Prospects in the Research of Nascent Adhesions

Nascent adhesions are submicron transient structures promoting the early adhesion of cells to the extracellular matrix. Nascent adhesions typically consist of several tens of integrins, and serve as platforms for the recruitment and activation of proteins to build mature focal adhesions. They are also associated with early stage signaling and the mechanoresponse. Despite their crucial role in sampling the local extracellular matrix, very little is known about the mechanism of their formation. Consequently, there is a strong scientific activity focused on elucidating the physical and biochemical foundation of their development and function. Precisely the results of this effort will be summarized in this article.

Transient structures in rupturing thin films: Marangoni-induced symmetry-breaking pattern formation in viscous fluids

In the minutes immediately preceding the rupture of a soap bubble, distinctive and repeatable patterns can be observed. These quasistable transient structures are associated with the instabilities of the complex Marangoni flows on the curved thin film in the presence of a surfactant solution. Here, we report a generalized Cahn-Hilliard-Swift-Hohenberg model derived using asymptotic theory that describes the quasielastic wrinkling pattern formation and the consequent coarsening dynamics in a curved surfactant-laden thin film. By testing the theory against experiments on soap bubbles, we find quantitative agreement with the analytical predictions of the nucleation and the early coarsening phases associated with the patterns. Our findings provide fundamental physical understanding that can be used to (de-)stabilize thin films in the presence of surfactants and have important implications for both natural and industrial contexts, such as the production of thin coating films, foams, emulsions, and sprays.

Particle acceleration by transient structures around Earth’s bow shock

<p>Upstream of Earth’s bow shock, the foreshock is filled with particles that have been reflected at the bow shock and are streaming away from it. Interaction of these particles with solar wind particles and discontinuities within this region can cause foreshock transients to form. Downstream of Earth’s bow shock, localized magnetosheath jets with high dynamic pressure are frequently observed. When such a fast magnetosheath jet compresses the ambient magnetosheath plasma, an earthward compressional bow wave/shock can form. Here we present that foreshock transients and magnetosheath jets can accelerate particles through shock drift acceleration, Fermi acceleration, and the betatron acceleration. Foreshock transients and magnetosheath jets therefore can increase the particle acceleration efficiency of the parent shock by providing additional acceleration. The shock environment relevant for particle acceleration is not just the shock itself, but also the nonlinear transient structures both upstream and downstream of it.</p>

III. Functions of short lifetime structures at large 9: case of nucleic acids

The short lifetime structures of nucleic acids are not well studied because of the poor recognition of their importance and the methodological difficulty. In case of proteins, which are a type of single-stranded biopolymers, the essential roles of their transient structures are well established. Therefore, the role of transient structures of nucleic acids is, naturally, of great interest. There have been multiple reports on the function-related unstable (transient) structures of single-stranded nucleotides, though not as many as at present. Recent methodological advances are now enabling us to observe structures with ultra-short lifetime (less than a nanosecond). On the other hand, the biological importance of transient structures of ribonucleicacid (RNA) is increasingly recognized because of the findings of novel functional RNAs such as microRNA. Therefore, the time has come to tackle the structure and function dynamic of RNA/deoxyribonucleic acid in relation to their transient, unstable structures. The specific properties of rapidity and diversity are hypothesized to be involved in unexplored phenomena in neuroscience.

Short lifetime structures appearing in RNA and DNA

The structure and function of unstable single-stranded DNA (ssDNA) have not been widely examined. While numerous studies have investigated DNA as an information molecule, the different potentials of DNA, particularly those of ssDNA, remain unclear. For polypeptides, the significance of denatured structures has been established in the past two decades. Polynucleotides have chemically distinct properties from polypeptides, but their behaviours have not been thoroughly studied. In this review, three different phenomena related to unstable ssDNA are discussed: i) ssDNA cleavage of restriction enzymes; ii) single-stranded conformation polymorphism, which can be theoretically explained by single-stranded conformation dynamics; and iii) random PCR (Polymerase Chain Reaction). These features can be utilized for scientific or technical applications. Previous studies showed that the phenomena exhibited by ssDNA were correctly understood only when unstable and transient structures were taken into account. Transient structures of ssDNA may have undiscovered functions governed by very rapid processes and/or multi-diversity states because of their intrinsic natures.