phenotypic clustering
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Author(s):  
Job A J Verdonschot ◽  
Marco Merlo ◽  
Fernando Dominguez ◽  
Ping Wang ◽  
Michiel T H M Henkens ◽  
...  

Abstract Aims The dilated cardiomyopathy (DCM) phenotype is the result of combined genetic and acquired triggers. Until now, clinical decision-making in DCM has mainly been based on ejection fraction (EF) and NYHA classification, not considering the DCM heterogenicity. The present study aimed to identify patient subgroups by phenotypic clustering integrating aetiologies, comorbidities, and cardiac function along cardiac transcript levels, to unveil pathophysiological differences between DCM subgroups. Methods and results We included 795 consecutive DCM patients from the Maastricht Cardiomyopathy Registry who underwent in-depth phenotyping, comprising extensive clinical data on aetiology and comorbodities, imaging and endomyocardial biopsies. Four mutually exclusive and clinically distinct phenogroups (PG) were identified based upon unsupervised hierarchical clustering of principal components: [PG1] mild systolic dysfunction, [PG2] auto-immune, [PG3] genetic and arrhythmias, and [PG4] severe systolic dysfunction. RNA-sequencing of cardiac samples (n = 91) revealed a distinct underlying molecular profile per PG: pro-inflammatory (PG2, auto-immune), pro-fibrotic (PG3; arrhythmia), and metabolic (PG4, low EF) gene expression. Furthermore, event-free survival differed among the four phenogroups, also when corrected for well-known clinical predictors. Decision tree modelling identified four clinical parameters (auto-immune disease, EF, atrial fibrillation, and kidney function) by which every DCM patient from two independent DCM cohorts could be placed in one of the four phenogroups with corresponding outcome (n = 789; Spain, n = 352 and Italy, n = 437), showing a feasible applicability of the phenogrouping. Conclusion The present study identified four different DCM phenogroups associated with significant differences in clinical presentation, underlying molecular profiles and outcome, paving the way for a more personalized treatment approach.


2020 ◽  
Vol 10 (1) ◽  
Author(s):  
L. de Frutos-Valle ◽  
C. Martin ◽  
J. A. Alarcón ◽  
J. C. Palma-Fernández ◽  
R. Ortega ◽  
...  

Abstract The main aim of this study was to generate an adequate sub-phenotypic clustering model of class III skeletal malocclusion in an adult population of southern European origin. The study design was conducted in two phases, a preliminary cross-sectional study and a subsequent discriminatory evaluation by main component and cluster analysis to identify differentiated skeletal sub-groups with differentiated phenotypic characteristics. Radiometric data from 699 adult patients of southern European origin were analyzed in 212 selected subjects affected by class III skeletal malocclusion. The varimax rotation was used with Kaiser normalization, to prevent variables with more explanatory capacity from affecting the rotation. A total of 21,624 radiographic measurements were obtained as part of the cluster model generation, using a total set of 55 skeletal variables for the subsequent analysis of the major component and cluster analyses. Ten main axes were generated representing 92.7% of the total variation. Three main components represented 58.5%, with particular sagittal and vertical variables acting as major descriptors. Post hoc phenotypic clustering retrieved six clusters: C1:9.9%, C2:18.9%, C3:33%, C4:3.77%, C5:16%, and C6:16%. In conclusion, phenotypic variation was found in the southern European skeletal class III population, demonstrating the existence of phenotypic variations between identified clusters in different ethnic groups.


2020 ◽  
Vol Publish Ahead of Print ◽  
Author(s):  
Adrianne Casebeer ◽  
Libby Horter ◽  
Jennifer Hayden ◽  
Jeff Simmons ◽  
Thomas Evers

PLoS Medicine ◽  
2020 ◽  
Vol 17 (6) ◽  
pp. e1003132 ◽  
Author(s):  
Matthew Dapas ◽  
Frederick T. J. Lin ◽  
Girish N. Nadkarni ◽  
Ryan Sisk ◽  
Richard S. Legro ◽  
...  

2019 ◽  
Vol 12 (7) ◽  
pp. 1149-1161 ◽  
Author(s):  
Megan Cummins Lancaster ◽  
Alaa Mabrouk Salem Omar ◽  
Sukrit Narula ◽  
Hemant Kulkarni ◽  
Jagat Narula ◽  
...  

2017 ◽  
Vol 216 (1) ◽  
pp. S242
Author(s):  
Offer Erez ◽  
Idan Menashe ◽  
Ruti Parvari ◽  
Orna Staretz-Chacham ◽  
Louis J. Muglia

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