atomic displacement parameter
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Author(s):  
Andrei V. Mironov ◽  
Vaclav Petříček ◽  
Nellie R. Khasanova ◽  
Evgeny V. Antipov

The incommensurate modulated crystal structure of Bi2.27Sr1.73CuO6 + δ(2201) phase [a= 5.3874 (5),b= 5.3869 (4),c= 24.579 (3) Å; β = 90.01 (1)°,q= 0.2105 (3)a* + 0.538 (4)c*,Z= 4, the (3 + 1)-dimensional monoclinicA2/a(α0γ) group] has been refined withR= 0.041,wR= 0.052 from X-ray single-crystal data including up to third-order satellite reflections. The same structure has also been considered as incommensurate composite witha2= 2.437,b2= 5.387,c2= 24.614, β2= 93.06,q2= 0.4524a2*−0.243c2*and the (3 + 1)-dimensionalA2/m(α0γ)0sgroup for the second component. Both approaches give quite similar results. The structure possesses oxygen disorder in the oxygen-rich region of the BiO layer. An extra O atom is determined in the bridging position shifted ∼ 0.6 Å from BiO towards the SrO layer. Its presence is the cause of the tremendous increase of the bismuthU11atomic displacement parameter in ∼ 20% of the unit cells (t= −0.05–0.15). Vacancies are determined in the oxygen site of the SrO layer, which may result in the oxygen content variation with annealing at different oxygen pressures. The total refined oxygen content 6.18 (1) corresponds to the results of chemical analysis.


2016 ◽  
Vol 49 (1) ◽  
pp. 110-119 ◽  
Author(s):  
Nanna Wahlberg ◽  
Niels Bindzus ◽  
Sebastian Christensen ◽  
Jacob Becker ◽  
Ann-Christin Dippel ◽  
...  

A serious limitation of the all-in-vacuum diffractometer reported by Straasø, Dippel, Becker & Als-Nielsen [J. Synchrotron Rad.(2014),21, 119–126] has so far been the inability to cool samples to near-cryogenic temperatures during measurement. The problem is solved by placing the sample in a jet of helium gas cooled by liquid nitrogen. The resulting temperature change is quantified by determining the change in unit-cell parameter and atomic displacement parameter of copper. The cooling proved successful, with a resulting temperature of ∼95 (3) K. The measured powder X-ray diffraction data are of superb quality and high resolution [up to sinθ/λ = 2.2 Å−1], permitting an extensive modelling of the thermal displacement. The anharmonic displacement of copper was modelled by a Gram–Charlier expansion of the temperature factor. As expected, the corresponding probability distribution function shows an increased probability away from neighbouring atoms and a decreased probability towards them.


2012 ◽  
Vol 45 (5) ◽  
pp. 1057-1060 ◽  
Author(s):  
Richard Ian Cooper ◽  
Andrea Thorn ◽  
David John Watkin

The traditional Waser distance restraint, the rigid-bond restraint and atomic displacement parameter (ADP) similarity restraints have an equal influence on both atoms involved in the restraint. This may be inappropriate in cases where it can reasonably be expected that the precision of the determination of the positional parameters and ADPs is not equal,e.g.towards the extremities of a librating structure or where one atom is a significantly stronger scatterer than the other. In these cases, the traditional restraint feeds information from the poorly defined atom to the better defined atom, with the possibility that its characteristics become degraded. The modified restraint described here feeds information from the better defined atom to the more poorly defined atom with minimal feedback.


Author(s):  
Mona Zebarjadi ◽  
Keivan Esfarjani ◽  
Gang Chen

A two dimensional toy model is developed to study thermal transport in cage like structures such a skutterudites and clathrates. The model consists of host atoms on a rectangular lattice with fillers in the center of each rectangle. The thermal conductivity is calculated by using Green-Kubo equilibrium molecular dynamics simulations. It is generally believed that the smaller and the heavier the filler, the lower is the thermal conductivity. We show that the thermal conductivity decreases with atomic displacement parameter while it has local minima versus filler mass. Our study shows that it is very important to include the correct band dispersion to get the right features of the thermal conductivity. We show that by having a double well potential one can further reduce the thermal conductivity.


2006 ◽  
Vol 39 (6) ◽  
pp. 901-904 ◽  
Author(s):  
C. B. Hübschle ◽  
P. Luger

The programMolIsoallows the visualization of colour-mapped iso-surfaces fromXDgrid orGAUSSIANCUBE files. It is written in C++ and uses theOpenGLandGLUTlibraries, and is therefore portable. Linux and Windows versions are currently available. Optically correct looking, transparent visualizations are possible. The molecule inside the iso-surface can be depicted as ball-and-stick or atomic displacement parameter ellipsoid–line models. Screenshots can easily be taken in Portable Pix Map format. Short video clips, with various codecs for presentations, are easy to create.


1999 ◽  
Vol 55 (6) ◽  
pp. 841-848 ◽  
Author(s):  
O. Gourdon ◽  
V. Petricek ◽  
M. Dusek ◽  
P. Bezdicka ◽  
S.  Durovic ◽  
...  

Sr14/11CoO3 (i.e. Sr14Co11O33, tetradecastrontium undecacobalt tritriacontaoxide), a new phase in the hexagonal perovskite Sr x CoO3 system, has been prepared and its structure solved from single-crystal X-ray data within the (3 + 1)-dimensional formalism. Sr14/11CoO3 crystallizes in the trigonal symmetry, R3¯m(00γ)0s superspace group with the following lattice parameters: as = 9.508 (2), cs = 2.5343 (7) Å, q = 0.63646 (11)c * and Vs = 198.40 (13) Å3. With the commensurate versus incommensurate test not being conclusive, the structure was considered as commensurate (P32 three-dimensional space group), but refined within the (3 + 1)-dimensional formalism to a residual factor R = 0.0351 for 47 parameters and 1169 independent reflections. Crenel functions were used for the oxygen and cobalt description and a Gram–Charlier expansion up to the third order of the atomic displacement parameter was employed for one Co atom. The structure is similar to that of Sr6/5CoO3, but with a different sequence of the octahedra and trigonal prism polyhedra along the [CoO3] chains. An interesting feature evidenced by the non-harmonic expansion is the displacement of the prismatic Co atoms from the site center, towards the prism rectangular faces.


Author(s):  
K. N. Trueblood ◽  
H. B. Bürgi ◽  
H. Burzlaff ◽  
J. D. Dunitz ◽  
C. M. Gramaccioli ◽  
...  

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