Beachrock Formation Mechanism Using Multiproxy Experimental Data from Natural and Artificial Beachrocks: Insights for a Potential Soft Engineering Method

Beachrocks are a window to the past environmental, geological, sedimentological and morphological conditions that were dominant in the coastal zone during their formation. Furthermore, beachrocks have the ability to reduce coastal erosion impact on sandy beaches. This study focuses on the beachrock formation mechanism through the comparison of cement characteristics, mineral chemistry and sedimentology of beachrock occurrences from two different geological and geographical localities: Diolkos, Corinth, Greece and Sumuide, Okinawa, Japan. In addition, in order to investigate a potential soft engineering method to protect coasts from erosion, artificial beachrock samples were created in vitro using sand samples and ureolytic bacteria from both areas under accelerating conditions. For Okinawa artificial beachrock experiments, the bacteria Pararhodobacter sp. was used, and for Diolkos, it was the bacteria Micrococcus yunnainensis sp. For the natural beachrocks, a multi-analytical approach was accomplished with the use of microscopic investigation, a scanning electron microscope, energy-dispersive X-ray spectroscopy, X-ray diffraction and X-ray fluorescence. Correlations were made between natural and artificial beachrocks. Results have shown that Diolkos beachrock was formed in the upper part of the intertidal zone, consisting of detrital material originating from the local bedrock, while Sumuide beachrock formed in the low intertidal–upper subtidal zone, consisting of coral sand and foraminifera fragments. For the artificial beachrocks, three samples were created using the microbial-induced carbonate precipitation (MICP) method, one from Diolkos (Corinth, Greece) and two from Sumuide (Okinawa, Japan). Diolkos artificial beachrock was better consolidated in comparison to Sumuide. Our investigation has shown that bacterial density was the key factor for the creation of the artificial beachrocks, while the samples’ granulometry played a secondary role in the process. The laboratory artificial beachrocks show encouraging results for a new soft engineering method to encounter beach erosion while keeping an ecofriendly character by saving energy, material resources and gas emissions. Artificial beachrocks can share the same properties of a natural beachrock and can contribute positively to marine biodiversity as a natural rocky habitat.

A Brief Report of Five Newly Recorded Korean Modern Benthic Foraminiferal Species

The present study describes five newly recorded modern benthic foraminiferal species from the subtidal zone near Jeju Island and East China Sea (Korea). The newly recorded species (Karrerulina conversa, Rotaliammina trumbulli, Vertebralina striata, Pegidia dubia and Amphistegina radiata) belong to five families (Prolixoplectidae, Trochamminidae, Fischerinidae, Pegidiidae and Amphisteginidae), three orders (Lituolida, Miliolida and Rotaliida) and two classes (Globothalamea and Tubothalamea). All these five genera (Karrerulina, Rotaliammina, Vertebralina, Pegidia and Amphistegina) were also reported for the first time from Korean waters. Most of the examined specimens were highly consistent morphologically with previous records from southern China and Japan. Additionally, Amphistegina is one of the symbiont-bearing larger benthic foraminifera, known to be mainly distributed in tropical to warm subtropical waters. This study contributes to the expansion of data on the recent foraminiferal species diversity in Korean waters.

Spatially Variable Effects of Artificially-Created Physical Complexity on Subtidal Benthos

In response to the environmental damage caused by urbanization, Nature-based Solutions (NbS) are being implemented to enhance biodiversity and ecosystem processes with mutual benefits for society and nature. Although the field of NbS is flourishing, experiments in different geographic locations and environmental contexts have produced variable results, with knowledge particularly lacking for the subtidal zone. This study tested the effects of physical complexity on colonizing communities in subtidal habitats in two urban locations: (1) Plymouth, United Kingdom (northeast Atlantic) and (2) Tel Aviv, Israel (eastern Mediterranean) for 15- and 12-months, respectively. At each location, physical complexity was manipulated using experimental tiles that were either flat or had 2.5 or 5.0 cm ridges. In Plymouth, biological complexity was also manipulated through seeding tiles with habitat-forming mussels. The effects of the manipulations on taxon and functional richness, and community composition were assessed at both locations, and in Plymouth the survival and size of seeded mussels and abundance and size of recruited mussels were also assessed. Effects of physical complexity differed between locations. Physical complexity did not influence richness or community composition in Plymouth, while in Tel Aviv, there were effects of complexity on community composition. In Plymouth, effects of biological complexity were found with mussel seeding reducing taxon richness, supporting larger recruited mussels, and influencing community composition. Our results suggest that outcomes of NbS experiments are context-dependent and highlight the risk of extrapolating the findings outside of the context in which they were tested.

Effect of a cold event on population and community of pit-inhabiting sea urchins in Western Pacific coasts

Coastal tide pools in southern Japan are inhabited by the rock-boring sea urchin Echinostrephus molaris, which excavate pits in the substrate. These pits are subsequently used by non-boring sea urchins such as Anthocidaris crassispina and Echinometra sp. B, and the recolonized pits are often inhabited by a commensal limpet-like trochid snail species, Broderipia iridescens. We explored the population and community dynamics of these sea urchins and the limpet-like snail by monitoring occupancy of 512 pits in tide pools in Shirahama, Japan from May 2017–May 2019. Initially, nearly all pits were occupied by any one of the three sea urchin species, but an unusual cold event in February 2018 caused a mass die off of these sea urchins. After this event, occupancy decreased from 99% to 15%, and the tropical species Echinometra sp. B disappeared from the study pools. We observed slow population recovery of E. molaris and A. crassispina, provably via migration of sub-adults from the subtidal zone. Turnover rate of the pit-occupying sea urchin species was <1.0% before the cold event, but drastically increased after the cold event. Population size of the commensal snail decreased along with those of their host, but the rate of commensalism was constant at 50–55% throughout the study period, suggesting that these snails followed their host sea urchins repeating inter-pit migration. Despite mass mortality and slow recovery, the sea urchin density remained high enough to maintain persistent sea urchin barrens throughout the study period.

The effect of salinity on aspects of the early development of the kelp species Undaria pinnatifida and Saccorhiza polyschides

It is likely that the introduction of the brown macroalga Undaria pinnatfida from the Pacific into the North Atlantic will impact competitively on the native species Saccorhiza polyschides; both are large kelps occupying the same subtidal zone with very similar life histories. The present study examines their tolerance to changes in salinity, under laboratory conditions, in order to provide a better understanding of their respective competitiveness in an estuarine environment. Experiments were carried out over a full range of salinity values, from 35 to 0, with respect to zoospore settlement and attachment, germination, post-germination progression to form gametophytes, gametophyte sex ratio, sporophyte production and blade length. Undaria zoospores settled and attached over the salinity range from 35 to 14 and germinated between 35 and 3.5. Post-germination progression occurred over the range from 35 to 14 whilst only small differences in the male/female ratio were recorded. Sporophyte blade production and development occurred over the range from 35 to 17.5 and peak production and longest blade length was recorded at 21. Saccorhiza zoospores settled and attached at and above 24.5 and germinated between 35 and 21. Sporophyte production and blade development occurred over the range from 35 to 24.5. In general, Undaria was shown to be much more tolerant of reductions in salinity compared to Saccorhiza and is more likely to penetrate further into estuarine environments.

Contoured Vertical Distribution and Spatio-temporal Variation of an Intertidal Macroalgal Assemblage in King George Island, Antarctica

Short-term variability, spatial variability, and the vertical distribution of an intertidal macroalgal assemblage were examined on the coast of Barton Peninsula, Maxwell Bay, King George Island, Antarctica. Sampling was performed during the three austral summer seasons from November 2016 to January 2019. The sampling interval for short-term variability was 1–2 months. Sampling for spatial variability was performed at two sites 400 m apart. Eighteen algal species were identified, with 75% relative coverage of the predominant red Iridaea cordata and endemic brown Phaeurus antarcticus. Summer abundance can be described as a shift from I. cordata to P. antarcticus, and the change in color is intuitively presented using a contour plot for the first time. Short-term variation in the macroalgal assemblage showed 78.35% similarity between one month and 64.61% similarity between two months. The spatial variation analysis indicated 77.13% similarity between the assemblage at the two sites. If global warming continues, the algal population of this region is expected to expand. P. antarcticus, which is primarily found in the subtidal zone, is predicted to relocate southward or higher in the near future. Long-term monitoring of this research region, which is dominated by the two species, is warranted to determine the impact of global warming on the macroalgal assemblage.

Stargrazing: Trophic ecology of sea stars in the Galápagos rocky subtidal zone

Sea stars (class Asteroidea) can play powerful and wide-ranging roles as consumers of algae and prey items in benthic ecosystems worldwide. In the Galápagos rocky subtidal zone, sea stars are abundant and diverse but their distribution, feeding habits and ecological impacts have received little attention. We compared diets and distributions across the six most abundant sea star species to examine functional roles of this important group. Bi-annual censuses carried out between 2006–2014 at two depths (6-8m, 12-15m) at 12 sites in Galápagos identified two abundance “hotspots” and revealed higher densities at locations with more heterogeneous benthic topographies. Field surveys revealed a high incidence of feeding (35–68% of individuals across species) and distinct diets were evident for each species in terms of food items and dietary breadth, suggesting niche partitioning. Most species can be classified as facultative herbivores, with diets dominated by crustose and turf algae supplemented by a small proportion of sessile invertebrates. The two most abundant species (Pentaceraster cumingi and Nidorellia armata) had the narrowest diets. Field prey selectivity experiments identified P. cumingi as a size-selective predator of the pencil urchin Eucidaris galapagensis. In field caging experiments, N. armata reduced biomass of unbleached crustose coralline algae and macroalgae by 72% and 52%, respectively. In the context of emerging threats such as disease, ocean acidification and climate change, a deeper understanding of distinct functional roles can inform ecological models and management plans.

Zoantharian Endosymbiont Community Dynamics During a Stress Event

Coral reefs are complex ecosystems composed of many interacting species. One ecologically important group consists of zoantharians, which are closely related to reef-building corals. Like corals, zoantharians form mutualistic symbioses with dinoflagellate micro-algae (family Symbiodiniaceae), but their associations remain underexplored. To examine the degree to which zoantharians exhibit altered symbiont dynamics under changing environmental conditions, we reciprocally transplanted colonies of Zoanthus sansibaricus between intertidal (2 m) and subtidal (26 m) depths within a reef in Okinawa, Japan. At this location, Z. sansibaricus can associate with three Symbiodiniaceae species from two genera distributed along a light and depth gradient. We developed species-specific molecular assays and sampled colonies pre‐ and post-transplantation to analyze symbiont community diversity. Despite large environmental differences across depths, we detected few symbiont compositional changes resulting from transplantation stress. Colonies sourced from the intertidal zone associated with mixtures of a “shallow” Symbiodinium sp. and a “shallow” Cladocopium sp. independent of whether they were transplanted to shallow or deep waters. Colonies sourced from the subtidal zone were dominated by a “deep” Cladocopium sp. regardless of transplant depth. Subtidal colonies brought to shallow depths did not transition to the presumably high-light adapted shallow symbionts present in the new environment, but rather bleached and died. These patterns mirror observations of highly stable coral-algal associations subjected to depth transplantation. Our results indicate that Zoanthus-Symbiodiniaceae symbioses remain stable despite stress, suggesting these important reef community members have relatively low capacity to shuffle to more stress-tolerant micro-algae in response to ongoing climate change.

Comparative genomics of the coconut crab and other decapod crustaceans: exploring the molecular basis of terrestrial adaptation

Background The complex life cycle of the coconut crab, Birgus latro, begins when an obligate terrestrial adult female visits the intertidal to hatch zoea larvae into the surf. After drifting for several weeks in the ocean, the post-larval glaucothoes settle in the shallow subtidal zone, undergo metamorphosis, and the early juveniles then subsequently make their way to land where they undergo further physiological changes that prevent them from ever entering the sea again. Here, we sequenced, assembled and analyzed the coconut crab genome to shed light on its adaptation to terrestrial life. For comparison, we also assembled the genomes of the long-tailed marine-living ornate spiny lobster, Panulirus ornatus, and the short-tailed marine-living red king crab, Paralithodes camtschaticus. Our selection of the latter two organisms furthermore allowed us to explore parallel evolution of the crab-like form in anomurans. Results All three assembled genomes are large, repeat-rich and AT-rich. Functional analysis reveals that the coconut crab has undergone proliferation of genes involved in the visual, respiratory, olfactory and cytoskeletal systems. Given that the coconut crab has atypical mitochondrial DNA compared to other anomurans, we argue that an abundance of kif22 and other significantly proliferated genes annotated with mitochondrial and microtubule functions, point to unique mechanisms involved in providing cellular energy via nuclear protein-coding genes supplementing mitochondrial and microtubule function. We furthermore detected in the coconut crab a significantly proliferated HOX gene, caudal, that has been associated with posterior development in Drosophila, but we could not definitively associate this gene with carcinization in the Anomura since it is also significantly proliferated in the ornate spiny lobster. However, a cuticle-associated coatomer gene, gammacop, that is significantly proliferated in the coconut crab, may play a role in hardening of the adult coconut crab abdomen in order to mitigate desiccation in terrestrial environments. Conclusion The abundance of genomic features in the three assembled genomes serve as a source of hypotheses for future studies of anomuran environmental adaptations such as shell-utilization, perception of visual and olfactory cues in terrestrial environments, and cuticle sclerotization. We hypothesize that the coconut crab exhibits gene proliferation in lieu of alternative splicing as a terrestrial adaptation mechanism and propose life-stage transcriptomic assays to test this hypothesis.

Species composition and distribution of seaweeds in Phu Yen province

Results of four field surveys, conducted from June 2017 to June 2018 found that in the Phu Yen coastal water, a total of 103 seaweed species have been recorded, increasing the total number of seaweed species in Phu Yen province to 133 species, with 81 newly recorded species for Phu Yen geographic area. Among 103 seaweed species, 4 species belong to Cyanobacteria, 38 species belong to Rhdophytes, 24 species belong to Phaeophytes, and 37 species belong to Chlorophytes. The number of species at surveyed sites V1 to V9 varies from 3 species/site (V3) to 83 species/site (V7) and on average 27 species/site. Sørensen’s similarity coefficient varies from 0.05 (between V3 and V7) to 0.86 (V3 and V4) and on average 0.25. 74/103 species were collected in the littoral zone, 67 species in sublittoral zone and most of them are distributed at 0-4 m water depth of subtidal zone. The marine algal flora is represented by mixing of subtropical and tropical characteristics as Cheney index was 3.