scholarly journals First report of lionfish prey from Western Florida waters as identified by DNA barcoding

PeerJ ◽  
2020 ◽  
Vol 8 ◽  
pp. e9922 ◽  
Author(s):  
Carlos A. Santamaria ◽  
James Locascio ◽  
Taylor M. Greenan
Keyword(s):  
Dna Barcoding ◽  
Regional Differences ◽  
Prey Species ◽  
Fish Prey ◽  
Crustacean Species ◽  
First Report ◽  
Eastern Gulf Of Mexico ◽  
Coi Barcoding ◽  
Coi Sequences ◽  
Prey Items

DNA barcoding was used to identify prey fragments recovered from the stomachs of lionfish harvested during the 2016 Sarasota Lionfish Derby. A total of 305 prey fragments were recovered from 50 stomachs (mean = 4.6 per stomach), of which 184 (60.3%) fragments could be identified to either species or genus when Cytochrome Oxidase I (COI) sequences were queried against the Barcode of Life Database. We identified 21 fish prey species which represented fourteen families and accounted for 95.7% of genetically identifiable prey items. The remaining prey items identified corresponded to six crustacean species. The four most common prey taxa in lionfish stomachs were Ptereleotris calliura (24.3%), an unidentified Microgobius species (20.4%), Diplectum formosum (14.3%), and Apogon aurolineatus (12.2%). The most frequently observed crustacean species, Metapenaeopsis goodei, was found in only three stomachs (6.1%). We also report eleven taxa as putative novel lionfish prey species, most of which are common in Florida waters. Sixteen prey items were identified as lionfish (P. volitans); however, it was not definitive whether these detections were due to cross contamination or cannibalization. This represents the first report of lionfish diets from Florida waters in the Eastern Gulf of Mexico based on barcoding efforts. Our results are largely congruent with previous COI barcoding based studies of lionfish diets, indicating these predators to be generalists exhibiting preferences for specific prey traits but with regional differences in their diets.

scholarly journals African freshwater eel species (Anguilla spp.) identification through DNA barcoding

2020 ◽  
Vol 71 (11) ◽  
pp. 1543
Author(s):  
Céline Hanzen ◽  
Martyn C. Lucas ◽  
Gordon O'Brien ◽  
Colleen T. Downs ◽  
Sandi Willows-Munro
Keyword(s):  
Dna Barcoding ◽  
Environmental Dna ◽  
Western Indian Ocean ◽  
Genetic Distances ◽  
Kwazulu Natal ◽  
Coi Barcoding ◽  
Ocean Region ◽  
Coi Sequences ◽  
Freshwater Eels ◽  
Identification Tool

Freshwater eels (Anguilla spp.) have a long and complex catadromous life cycle. This unique feature, coupled with difficulty in separating species based on morphology, makes them complex targets for conservation. In this study we evaluated the utility of DNA barcoding using cytochrome oxidase I (COI) to delimit the four species of African eels found in the western Indian Ocean region. We collected 76 individual fin clips from the four eel species (A. mossambica, n=51; A. marmorata, n=17; A. bengalensis, n=6; A. bicolor, n=2) in the rivers of KwaZulu–Natal, South Africa, in 2016–18. Phylogenetic analysis of the COI sequences recovered all four species as monophyletic. Barcoding gap analyses were performed and there was no found overlap in inter- and intraspecific genetic distances. Consequently, the use of COI barcoding as an identification tool was found to be reliable for identifying African eels to the species level, which suggests that this marker should be included in future environmental DNA or metabarcoding studies.

Diet and sexual maturation of the neon flying squid Ommastrephes bartramii during autumn and spring in the Kuroshio–Oyashio transition region

2008 ◽  
Vol 88 (2) ◽  
pp. 381-389 ◽  
Author(s):  
Hikaru Watanabe ◽  
Tsunemi Kubodera ◽  
Taro Ichii ◽  
Mitsuo Sakai ◽  
Masatoshi Moku ◽  
...  
Keyword(s):  
Transition Region ◽  
Sexual Maturation ◽  
Prey Species ◽  
Feeding Strategy ◽  
Ommastrephes Bartramii ◽  
Neon Flying Squid ◽  
The Difference ◽  
Diaphus Theta ◽  
The Kuroshio ◽  
Prey Items

Diet and sexual maturation were examined in the winter–spring cohort of the neon flying squid, Ommastrephes bartramii, during its southward migration through the Kuroshio–Oyashio transition region of the western North Pacific. The main prey items are micronektonic animals and small pelagic fish, which were abundantly distributed throughout the study area. Among the prey species, O. bartramii was dependent on the Japanese anchovy Engraulis japonicus, which also migrate from the northern to southern transition region during the winter, and the micronektonic squid Watasenia scintillans throughout the study period. Other common prey items were Gonatopsis borealis, Diaphus theta, and Ceratoscopelus warmingii from October to November or December, and Tarletonbeania taylori after December. These dietary changes can be explained by the difference in the seasonal north–south migration patterns of the predator and prey species. Male sexual maturation progressed throughout the season, and most individuals were fully mature in January. In contrast, most of the females were immature throughout the study period. The feeding strategy of the squid in relation to their seasonal north to south migration and sexual maturation was discussed.

Otolith chemistry is more accurate than otolith shape in identifying cod species (genus Pseudophycis) in the diet of Australian fur seals (Arctocephalus pusillus doriferus)

2011 ◽  
Vol 68 (10) ◽  
pp. 1732-1743 ◽  
Author(s):  
Jodie Kemp ◽  
Stephen E. Swearer ◽  
Gregory P. Jenkins ◽  
Simon Robertson
Keyword(s):  
Fourier Analysis ◽  
Significant Variation ◽  
Prey Species ◽  
Fine Scale ◽  
Accurate Identification ◽  
Fish Prey ◽  
Otolith Shape ◽  
Discriminant Model ◽  
Fur Seals ◽  
Otolith Core

Fine-scale shape variation and the added effect of partial digestion often limits accurate identification of different teleost prey species in marine diet studies using otoliths. We evaluated the use of fine-scale shape and trace element variation in digested otoliths to identify fish prey species from the diet of predators. Fourier analysis of otolith shape revealed significant variation between red cod ( Pseudophycis bachus ) and bearded rock cod ( Pseudophycis barbata ) otoliths. Incorporating otoliths that had been consumed by Australian fur seals ( Arctocephalus pusillus doriferus ) into a Fourier analysis discriminant model identified 73% of otoliths as those of red cod and 27% as those of bearded rock cod. However, in vitro digestion of red cod and bearded rock cod otoliths resulted in incorrect classification of both cod species otoliths to varying degrees when using Fourier analysis shape descriptors. There was significant variation between red cod and bearded rock cod otolith core chemistry. Incorporating otoliths consumed by the seals into an otolith core chemistry discriminant model identified all otoliths as those of red cod. Using otolith core chemistry to identify prey species was found to be successful, and there is great potential for this technique to have wider applications in investigating ecosystem trophic interactions.

scholarly journals First record of roving coral grouper Plectropomus pessuliferus (Fowler, 1904) from Saint Martin’s Island, Bangladesh based on Morphology and DNA Barcoding

2021 ◽  
Vol 32 (2) ◽  
pp. 293-301
Author(s):  
MD JAYEDUL ISLAM ◽  
SHARMIN AKTER ◽  
PROVAKOR SARKAR ◽  
MOHAMMAD RASHED ◽  
IREEN PARVIN ◽  
...  
Keyword(s):  
Dna Barcoding ◽  
Bay Of Bengal ◽  
New Record ◽  
First Record ◽  
Morphological Characters ◽  
Marine Waters ◽  
First Report ◽  
Saint Martin ◽  
Northern Bay Of Bengal

A new record of Plectropomus pessuliferus (Serranidae: Epinephelinae) wasdocumented based on morphological characters and DNA barcoding. The species was collectedduring a regular survey for making an inventory of reef associated fishes in Saint Martin`sIsland, Bangladesh. This is the first report of roving coral grouper from the marine waters ofBangladesh validated by morpho-meristic analysis and DNA barcoding. This is also the firstreport from the northern Bay of Bengal.

scholarly journals First results of Central Asiatic Euchalcia DNA-studies: comparison of nucleotide sequence differences in COI between Euchalcia herrichi and Euchalcia gyulai (Lepidoptera: Noctuidae)

2020 ◽  
Vol 6 ◽  
pp. 1-4
Author(s):  
Stanislav K Korb
Keyword(s):  
Nucleotide Sequence ◽  
Cytochrome C ◽  
Dna Barcoding ◽  
Cytochrome C Oxidase ◽  
Coi Gene ◽  
First Results ◽  
The Difference ◽  
Coi Sequences ◽  
Lepidoptera Noctuidae ◽  
Two Populations

We submitted first results of the DNA studies of the Central Asiatic owlet moths of the genus Euchalcia. Standard cytochrome C oxidase subunit I (COI) gene fragments were sequenced for DNA barcoding of six specimens belonging to Euchalcia herrichi and Euchalcia gyulai. We compared the received sequences between discussed species and with two European Euchalcia species (E. variabilis and E. consona). We found no variability within the COI sequences of the samples collected in the same locality (Alai Mts., Kyrgyzstan), whereas the difference in COI sequences between two populations (Ketmen Mts., Kazakhstan and Alai Mts., Kyrgyzstan) was 0.005.

scholarly journals Predatory Behavior of Yellow Baboons

Behaviour ◽  
1976 ◽  
Vol 56 (1-2) ◽  
pp. 44-67 ◽  
Author(s):  
Glenn Hausfater
Keyword(s):  
Prey Item ◽  
Prey Species ◽  
Predatory Behavior ◽  
Primate Species ◽  
Papio Cynocephalus ◽  
Vervet Monkeys ◽  
Adult Males ◽  
Lepus Capensis ◽  
Number Of Individuals ◽  
Prey Items

Abstract1. A group of 32 yellow baboons (Papio cynocephalus) in the Masai-Amboseli National Park, Kenya, caught and ate 45 vertebrate prey items during 2519.19 hours of observation. 2. Eighty percent of the prey items were mammals and the most frequently eaten species were African hares (Lepus capensis), vervet monkeys (Cercopithecus aethiops) and neonate gazelle (Cazella granti and G. thomsoni) in that order. The details of predatory behavior for each prey species are described. 3. Rates of predation were significantly higher during the long dry season than during other months of the year, although no correlation was found between total monthly rainfall and monthly rates of predation. A lognormal model however provided a good fit to the monthly rate of predation data suggesting that the rate of predation by Amboseli baboons was affected by several factors that acted multiplicatively with respect to each other and were themselves related to rainfall or dryness. 4. A mean of 2.3 individuals fed directly from the carcass of each prey item. A mean of 3.5 individuals per prey item fed directly or indirectly, i.e., on scraps, from each carcass. In general, both the number of individuals who fed from each carcass and the duration of their feeding bouts was dependent upon the gross body size of the prey item. Adult males fed directly from the carcass of prey items for about three times more minutes than expected from their number in the group; other classes of individuals fed directly from prey carcasses for only one-fourth as many minutes as expected. In general, an adult male would be expected to feed on each category of vertebrate prey at least once per year, while individuals of all other age-sex classes would be expected to feed on most prey categories only once every two years. 5. The most frequent social behavior around prey items was agonistic bouts; no cooperation, simultaneous feeding or specific begging gestures were observed. 6. Estimates of the total number of prey killed annually by Amboseli baboons indicate that baboon predation probably has a negligible effect on prey populations other than vervet monkeys. 7. It is speculated that the need for vitamin B12 underlies baboon predatory behavior, and perhaps that of other primate species as well.

scholarly journals Selective feeding by pelagic fish in the Belgian part of the North Sea

2013 ◽  
Vol 71 (4) ◽  
pp. 808-820 ◽  
Author(s):  
Karl Van Ginderdeuren ◽  
Sofie Vandendriessche ◽  
Yves Prössler ◽  
Hakimu Matola ◽  
Magda Vincx ◽  
...  
Keyword(s):  
North Sea ◽  
Prey Species ◽  
Pelagic Fish ◽  
Horse Mackerel ◽  
Calanoid Copepods ◽  
Oikopleura Dioica ◽  
The North ◽  
Fullness Index ◽  
The North Sea ◽  
Prey Items

Abstract Pelagic fish and their planktonic prey are susceptible to a changing climate, giving rise to mismatches and planktonic bottlenecks. A detailed examination of the feeding ecology of pelagic fish can provide valuable insights in the causes and consequences of these phenomena. The present study investigated the diets of both juvenile and adult herring, sprat, horse mackerel, and adult mackerel in the Belgian part of the North Sea (BPNS) in relation to the distribution of zooplankton and ambient abiotic conditions. A study sampling pelagic fish and zooplankton simultaneously every month during consecutive years, and spanning nearshore to offshore sampling locations, is unprecedented in the southern North Sea. In all, 71 prey taxa were found in 725 stomachs of fish gathered at ten stations, sampled monthly in 2009 and 2010. The proportion of fish with empty stomachs was low (11%), and the number of prey species ranged from 0 to 21 sp. per stomach. The diet of herring and sprat was dominated by calanoid copepods, but herring stomachs also contained many decapod larvae, amphipods, cumaceans, and mysids. Mackerel added sandeels to an otherwise planktivorous diet. Horse mackerel consumed both benthic and pelagic prey. The highest frequency of occurrence in the stomachs was observed for the calanoid copepods Temora longicornis (33 408 of all 55 004 prey items identified) and Centropages hamatus (5003 times found). The fullness index ranged between 0 and 20.6, and averaged highest for sprat (0.86), followed by herring (0.60), horse mackerel (0.26), and mackerel (0.24). We observed a different composition of zooplankton species and life stages in the plankton samples compared with those in the fish stomachs. More adult and female copepods were eaten than the plankton samples would suggest. Also, the calanoid copepod Acartia clausi, the most common calanoid species in the BPNS, was barely eaten, as was the case for fish eggs and larvae, and for common planktonic species known to be preyed upon elsewhere (e.g. Oikopleura dioica, Evadne nordmanni, Euterpina acutifrons). Additionally, plankton densities averaged highest in spring and at midshore (20–30 km from shore) stations, but fullness index was highest nearshore (<12 km from shore) and (apart from sprat) in summer. A significant correlation between fullness index and total density of planktonic prey species was not observed, indicating that zooplankton densities were not restrictive. Yet the fact that more than 100 plankton species occurred in the plankton samples and just two of these (T. longicornis and C. hamatus) accounted for nearly three-quarters of all ingested prey items leads us to conclude that even minor changes in the ecology or phenology of these dominant zooplankters could have profound effects on pelagic fish stocks.

Paralarval and juvenile stages as a proxy for cephalopod diversity in the Juan Fernández and Desventuradas ecoregion, southeast Paific Ocean

2020 ◽  
Vol 96 (2) ◽  
pp. 263-280
Author(s):  
Sergio A Carrasco ◽  
Andrea I Varela ◽  
Christian M Ibáñez ◽  
Javier Sellanes ◽  
Martin Thiel
Keyword(s):  
Dna Barcoding ◽  
Early Life ◽  
Current Knowledge ◽  
Morphological Characteristics ◽  
Oceanic Islands ◽  
Life Stages ◽  
Early Life Stages ◽  
Marine Park ◽  
Coi Sequences ◽  
Juan Fernández Archipelago

Southeast Pacific (SEP) oceanic islands are characterized by their extreme isolation and high degree of endemism. To date, most research has focused on species composition and distributions, with little information available on early life stages. In this study, we provide new records of early life stages of cephalopods based on planktonic collections carried out during October and November 2016 around three oceanic islands: San Félix, San Ambrosio (Desventuradas Islands; 26.3°S, 79.8°W), and Alejandro Selkirk (Juan Fernández Archipelago; 33.7°S, 80.7°W), which are part of the Nazca-Desventuradas Marine Park, the largest marine park in the Americas. Twenty-four paralarvae and juveniles were obtained and identified based on morphological characteristics [i.e., mantle length (ML), chromatophore patterns, number and shape of suckers on arms and tentacles] and DNA barcoding [i.e., mitochondrial Cytochrome c Oxidase subunit I (COI) sequences]. Six families were recorded, including Brachioteuthidae, Onychoteuthidae, Tremoctopodidae, Octopodidae, Octopoteuthidae, and Lycoteuthidae. Most individuals (92%) corresponded to larger stages of 4–12 mm ML (Brachioteuthidae, Onychoteuthidae, Tremoctopodidae, and Lycoteuthidae), and 8% were newly hatched paralarvae of around 1 mm ML (Octopodidae and Octopoteuthidae). The DNA barcoding approach validated the identity of Brachioteuthis sp., Onykia aff. robsoni , Octopus mimus, and Tremoctopus sp., with two specific identities (Octopoteuthidae and Lycoteuthis sp.) remaining to be evaluated. ese records provide new information on cephalopod diversity and distribution around SEP islands, adding to the current knowledge about zoogeographic patterns of this group and evidencing their potential relationships with continental or nearby habitats.

A test of DNA barcoding in crayfish of the upper James River basin, Virginia

2015 ◽  
Vol 21 (1) ◽  
pp. 179-183
Author(s):  
Paul R. Cabe ◽  
Bradleigh E. Navalsky ◽  
Ainsley K. Bloomer ◽  
Ryan Doherty ◽  
Jordan Edgren ◽  
...  
Keyword(s):  
Dna Barcoding ◽  
River Basin ◽  
Native Species ◽  
Biological Diversity ◽  
Coi Gene ◽  
Test Case ◽  
Accurate Identification ◽  
James River ◽  
Coi Sequences ◽  
Current Sequence

Abstract Crayfish populations in North America face many conservation threats, including habitat loss, degradation, and the introduction of non-native species. The management of biological diversity requires accurate identification of species, and for crayfish, many species are difficult to identify using standard morphological approaches. We investigated DNA barcoding using cytochrome oxidase I (COI) gene sequences to determine if this widely used method is useful in the identification of crayfish. As a test case, we sampled crayfish from the middle and upper James River basin in Virginia. This area had been recently surveyed by experienced crayfish biologists, and hosts a moderate number of species. We collected nearly 300 COI sequences, which clustered clearly into seven groups, mirroring the seven species reported for this watershed. Despite the unambiguous clustering, the range of sequence variation within species overlapped the range of variation between species; we detected no clear "barcode gap." Although this method holds promise as an aid to crayfish identification, current sequence databases (GenBank, BOLD) do not contain enough appropriate COI sequences to allow unequivocal identification in this unique and understudies fauna.

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