scholarly journals Evidence of cryptic lineages within a small South American crocodilian: the Schneider’s dwarf caiman Paleosuchus trigonatus (Alligatoridae: Caimaninae)

PeerJ ◽  
2019 ◽  
Vol 7 ◽  
pp. e6580 ◽  
Author(s):  
Pedro Senna Bittencourt ◽  
Zilca Campos ◽  
Fábio de Lima Muniz ◽  
Boris Marioni ◽  
Bruno Campos Souza ◽  
...  
Keyword(s):  
Amazon Basin ◽  
Atlantic Coast ◽  
South American ◽  
Species Discovery ◽  
Continental Scale ◽  
Low Genetic Diversity ◽  
Phylogenetic Reconstructions ◽  
Mitochondrial Cytochrome B ◽  
Small Home Range ◽  
East West

Schneider’s dwarf caiman Paleosuchus trigonatus is one of the smallest living crocodilians. Due to its broad distribution, cryptic behavior, and small home range, the species is well suited for the study of phylogeographic patterns on a continental scale. Additionally, this species is under threat due to habitat loss, trade and harvest, but is considered at low conservation risk by the IUCN. In the present study we test the hypothesis that P. trigonatus is comprised of geographically structured lineages. Phylogenetic reconstructions of the mitochondrial cytochrome b gene and single locus species discovery methods revealed the existence of two well-supported lineages within P. trigonatus—an Amazonian and Guianan lineage. Fossil calibrated divergence of these lineages was estimated to have occurred in the Late Miocene (7.5 Ma). The hypothesis that the Atlantic coast drainages might have been colonized from the southeast or central Amazon is supported by demographic metrics and relatively low genetic diversity of the Coastal and upper Branco populations when compared to the Amazon basin populations. The Amazon basin lineage is structured along an east-west gradient, with a sharp transition in haplotype frequencies to the east and west of the Negro and Madeira rivers. These lineages are already under anthropogenic threat and, therefore, are conservation dependent. Recognition of these lineages will foster discussion of conservation future of P. trigonatus and these lineages.

scholarly journals Mapping the hidden diversity of the Geophagus sensu stricto species group (Cichlidae: Geophagini) from the Amazon basin

PeerJ ◽  
2021 ◽  
Vol 9 ◽  
pp. e12443
Author(s):  
Aline Mourão Ximenes ◽  
Pedro Senna Bittencourt ◽  
Valéria Nogueira Machado ◽  
Tomas Hrbek ◽  
Izeni Pires Farias
Keyword(s):  
Amazon Basin ◽  
Sensu Stricto ◽  
Species Group ◽  
Morphological Data ◽  
South American ◽  
Undescribed Species ◽  
Species Discovery ◽  
Large Numbers ◽  
Species Groups ◽  
Lineage Diversity

South American freshwater ichthyofauna is taxonomically the most diverse on the planet, yet its diversity is still vastly underestimated. The Amazon basin alone holds more than half of this diversity. The evidence of this underestimation comes from the backlog of morphologically distinct, yet undescribed forms deposited in museum collections, and from DNA-based inventories which consistently identify large numbers of divergent lineages within even well-studied species groups. In the present study, we investigated lineage diversity within the Geophagus sensu stricto species group. To achieve these objectives, we analyzed 337 individuals sampled from 77 locations within and outside the Amazon basin representing 10 nominal and six morphologically distinct but undescribed species. We sequenced the mitochondrial cytochrome c oxidase subunit I (COI) and delimited lineages using four different single-locus species discovery methods (mPTP-15 lineages; LocMin-14 lineages; bGMYC-18 lineages; and GMYC-30 lineages). The six morphologically distinct but undescribed species were also delimited by the majority of the species discovery methods. Five of these lineages are restricted to a single collection site or a watershed and their habitats are threatened by human activities such as deforestation, agricultural activities and construction of hydroelectric plants. Our results also highlight the importance of combining DNA and morphological data in biodiversity assessment studies especially in taxonomically diverse tropical biotas.

A new species of Dichelyne (Nematoda, Cucullanidae) parasitizing sciaenid fishes from off the South American Atlantic coast

2009 ◽  
Vol 54 (1) ◽  
Author(s):  
Juan Timi ◽  
Ana Lanfranchi ◽  
Luiz Tavares ◽  
José Luque
Keyword(s):  
New Species ◽  
Atlantic Coast ◽  
Length Distribution ◽  
Distribution Patterns ◽  
Nematode Species ◽  
Valid Species ◽  
South American ◽  
Type Specimens ◽  
Pacific Waters ◽  
A New Species

AbstractA new nematode species Dichelyne (Cucullanellus) sciaenidicola sp. nov. is described based on specimens collected from the Whitemouth croaker Micropogonias furnieri (Desmarest) and the Argentine croaker Umbrina canosai Berg, from coastal waters of Argentina and Brazil. These nematodes were firstly identified as D. (C.) elongatus (Törnquist, 1931), a commonly reported species from M. furnieri in South American Atlantic waters. However, other species of Dichelyne have so far been reported from this host in the same area, namely D. (C.) rodriguesi (Pinto, Fábio et Noronha, 1970), D. (C.) amaruincai (Freitas, Vicente et Ibañez, 1969) and D. (Dichelyne) micropogonii Pereira et Costa, 1996. A careful re-examination of these parasites, as well as of type specimens of all species reported from M. furnieri, revealed that these nematodes represented a new species. The new species is distinguished from most of its congeners by having papillae 5–7 and 9 forming a subventral line close to cloaca, this feature is shared with other 6 species [D. (C.) dichelyneformis (Szidat, 1950), D. (C.) fraseri (Baylis, 1929), D. (C.) abbreviatus (Rudolphi, 1819), D. (C.) adriaticus (Törnquist, 1931), D. (C.) minutus (Rudolphi, 1819) and D. (C.) mariajuliae Alarcos, Timi, Etchegoin et Sardella, 2006)], which are readily distinguished by their body size, spicules length, distribution patterns of other papillae and position of the excretory pore and deirids. Also, D. (C.) elongatus from Umbrina canariensis (Valenciennes) from West Africa is established as a new species Dichelyne (Cucullanellus) yvonnecampanae sp. nov.; D. (C.) amaruincai from Pacific waters is considered as a valid species, D. (D.) micropogonii is regarded as species inquirendae and D. (C.) rodriguesi is identified as Cucullanus sp.

Reconstruction of the last three millennia South American Monsoon variability over the Amazon basin using speleothem isotope records 

2021 ◽  
Author(s):  
Marcela Eduarda Della Libera de Godoy ◽  
Valdir F. Novello ◽  
Francisco William Cruz
Keyword(s):  
High Resolution ◽  
Amazon Basin ◽  
Rainfall Variability ◽  
Isotope Analysis ◽  
Core Region ◽  
South American ◽  
The South ◽  
Continuous Increase ◽  
South American Monsoon ◽  
The Core

<p>South American Monsoon System (SAMS) and its main feature, the South American Convergence Zone (SACZ) are responsible for the major distribution of moisture in South America. The current work presents a novel high-resolution oxygen isotope record (δ<sup>18</sup>O) based on speleothems from southwest Amazon basin (Brazil), right at SAMS' core region and SACZ onset, where there is still a gap of high resolution paleoclimate records. The novel δ<sup>18</sup>O record presents an average of 3 year-resolution, composed by 1344 stable isotope analysis performed in two speleothems with a well-resolved chronology (37 U/Th ages) with average errors <1%. This work aims to describe the rainfall variability of the core region of the South American monsoon for the last 3k years and to take a broader look at precipitation patterns over Amazon basin. The Rondônia δ18O record shows three main stages throughout this time period. The first is from -1000 to ~400 CE, where it’s in accordance with most of other paleorecords from the Amazon basin. the second segment  is from ~400 to 1200 CE, when there is a continuous increase in the δ18O record until it reaches its highest values around 850 CE during the MCA (800-1200 CE), which is in accordance with western Amazon records, whilst the record in eastern Amazon presents an opposite trend. Thus, a precipitation dipole over Amazon emerges from ~400 CE onwards, majorly triggered by anomalous climate changes such as MCA, where western (eastern) Amazon is drier (wetter). During LIA (1450-1800 CE), on the other hand, Rondônia record presents its lowest values, also agreeing with western records and with records under the influence of SACZ whilst on eastern Amazon a drier period is established. Therefore, with this novel paleoclimate record located at the core region of SAMS, it's possible to evidence the dynamics of the precipitation dipole over the Amazon region, as well as understand the SACZ intensity variations.</p>

Late-summer carbon fluxes from Canadian forests and peatlands along an east–west continental transect

2006 ◽  
Vol 36 (3) ◽  
pp. 783-800 ◽  
Author(s):  
Carole Coursolle ◽  
Hank A Margolis ◽  
Alan G Barr ◽  
T Andrew Black ◽  
Brian D Amiro ◽  
...  
Keyword(s):  
Large Scale ◽  
Ecosystem Respiration ◽  
Late Summer ◽  
Ecosystem Productivity ◽  
Diurnal Courses ◽  
Continental Scale ◽  
Young Forest ◽  
C Cycle ◽  
Use Efficiency ◽  
East West

Net ecosystem productivity (NEP) during August 2003 was measured by using eddy covariance above 17 forest and 3 peatland sites along an east–west continental-scale transect in Canada. Measured sites included recently disturbed stands, young forest stands, intermediate-aged conifer stands, mature deciduous stands, mature conifer stands, fens, and an open shrub bog. Diurnal courses of NEP showed strong coherence within the different ecosystem categories. Recently disturbed sites showed the weakest diurnal cycle; and intermediate-aged conifers, the strongest. The western treed fen had a more pronounced diurnal pattern than the eastern shrub bog or the Saskatchewan patterned fen. All but three sites were clearly afternoon C sinks. Ecosystem respiration was highest for the young fire sites. The intermediate-aged conifer sites had the highest maximum NEP (NEPmax) and gross ecosystem productivity (GEPmax), attaining rates that would be consistent with the presence of a strong terrestrial C sink in regions where these types of forest are common. These results support the idea that large-scale C cycle modeling activities would benefit from information on the age-class distribution and disturbance types within larger grid cells. Light use efficiency followed a pattern similar to that of NEPmax and GEPmax. Four of the five recently disturbed sites and all three of the peatland sites had low water use efficiencies.

scholarly journals Extreme Drought Events over the Amazon Basin: The Perspective from the Reconstruction of South American Hydroclimate

Water ◽  
2018 ◽  
Vol 10 (11) ◽  
pp. 1594 ◽  
Author(s):  
Beatriz Garcia ◽  
Renata Libonati ◽  
Ana Nunes
Keyword(s):  
Surface Temperature ◽  
Extreme Events ◽  
General Circulation ◽  
Amazon Basin ◽  
General Circulation Models ◽  
Extreme Drought ◽  
Severe Drought ◽  
South American ◽  
Spatial And Temporal Patterns ◽  
Near Surface

The Amazon basin has experienced severe drought events for centuries, mainly associated with climate variability connected to tropical North Atlantic and Pacific sea surface temperature anomalous warming. Recently, these events are becoming more frequent, more intense and widespread. Because of the Amazon droughts environmental and socioeconomic impacts, there is an increased demand for understanding the characteristics of such extreme events in the region. In that regard, regional models instead of the general circulation models provide a promising strategy to generate more detailed climate information of extreme events, seeking better representation of physical processes. Due to uneven spatial distribution and gaps found in station data in tropical South America, and the need of more refined climate assessment in those regions, satellite-enhanced regional downscaling for applied studies (SRDAS) is used in the reconstruction of South American hydroclimate, with hourly to monthly outputs from January 1998. Accordingly, this research focuses on the analyses of recent extreme drought events in the years of 2005 and 2010 in the Amazon Basin, using the SRDAS monthly means of near-surface temperature and relative humidity, precipitation and vertically integrated soil moisture fields. Results from this analysis corroborate spatial and temporal patterns found in previous studies on extreme drought events in the region, displaying the distinctive features of the 2005 and 2010 drought events.

Deforestation Impacts on Amazon-Andes Hydroclimatic Connectivity

2021 ◽  
Author(s):  
Juan P. Sierra ◽  
C. Junquas ◽  
J. C. Espinoza ◽  
H. Segura ◽  
T. Condom ◽  
...  
Keyword(s):  
Transition Region ◽  
Amazon Basin ◽  
Atmospheric Stability ◽  
Austral Summer ◽  
Hadley Cell ◽  
South American ◽  
Tropical Andes ◽  
Tropical Glaciers ◽  
Precipitation Recycling ◽  
The Rich

Abstract Amazonian deforestation has accelerated during the last decade, threatening an ecosystem where almost one third of the regional rainfall is transpired by the local rainforest. Due to the precipitation recycling, the southwestern Amazon, including the Amazon-Andes transition region, is particularly sensitive to forest loss. This study evaluates the impacts of Amazonian deforestation in the hydro-climatic connectivity between the Amazon and the eastern tropical Andes during the austral summer (December-January-February) in terms of hydrological and energetic balances. Using 10-year high-resolution simulations (2001–2011) with the Weather Research and Forecasting Model, we analyze control and deforestation scenario simulations. Regionally, deforestation leads to a reduction in the surface net radiation, evaporation, moisture convergence and precipitation (~ 20%) over the entire Amazon basin. In addition, during this season, deforestation increases the atmospheric subsidence over the southern Amazon and weakens the regional Hadley cell. Atmospheric stability increases over the western Amazon and the tropical Andes inhibiting convection in these areas. Consequently, major deforestation impacts are observed over the hydro-climate of the Amazon-Andes transition region. At local scale, nighttime precipitation decreases in Bolivian valleys (~ 20–30%) due to a strong reduction in the humidity transport from the Amazon plains toward Andes linked to the South American low-level jet. Over these valleys, a weakening of the daytime upslope winds is caused by local deforestation, which reduces the turbulent fluxes at lowlands. These alterations in rainfall and atmospheric circulation could impact the rich Andean ecosystems and its tropical glaciers.

South American Missions

2021 ◽  
Author(s):  
Cameron Jones
Keyword(s):  
South America ◽  
Amazon Basin ◽  
Colonial Period ◽  
Indigenous Populations ◽  
South American ◽  
Extensive Experience ◽  
Republican Period ◽  
The North ◽  
Bourbon Reforms ◽  
Franciscan Order

While it is certainly true that more academic studies have focused on the North American missions, in terms of their historical impact South American missions were just as important to the frontiers of Spain and Portugal’s American empires. The massive size alone of the frontier region, stretching from the upper reaches of the Amazon basin to the headwaters of the Paraná as well as stretching across the lower Southern Cone, meant numerous missionary enterprises emerged in an attempt to evangelize the peoples who inhabited these regions. While small handfuls of Dominicans, Mercedarians, and Augustinians would engage in such efforts, most missions were established by the Jesuits or Franciscans. Certainly, for the Jesuits, or the Society of Jesus as they are properly known, American missions represented an extension of the Counter-Reformation for which they were created. Starting in the mid-16th century, this relatively new organization, founded in 1534, began in earnest to “reduce” the Indigenous peoples into their missions. These activities, however, abruptly ended when the Jesuits were expelled from both the Portuguese and Spanish empires in 1759 and 1767 respectfully. The much older Franciscan order had extensive experience in popular missions in Europe and was one of the first orders of regular clergy in the Americas. Franciscans, like the Jesuits, engaged in evangelizing activities throughout both North and South America from the colonial period to the present. The expulsion of the Jesuits, however, pushed them further to the forefront of missionizing efforts in the late colonial period. This acceleration of Franciscan missionary activity was aided by the establishment of the Apostolic Institute in 1682. The Institute created a pipeline of missionaries from Spain to come directly to frontier areas with funding from the crown. While this aided missionary efforts throughout South America, particularly in areas abandoned by the Jesuits, it embroiled the missionaries in the politics of the Bourbon reforms and their obsession with limited clerical power. Ultimately, while missionizing efforts continued into the Republican period, their association with the Spanish and Portuguese crowns led to widespread suppression and secularization following independence. The historiographical divide in the field tends to lie between usually older, Eurocentric histories by scholar-clerics which focus on the missionaries themselves, and newer studies carried out by more secular professional historians that examine how Indigenous populations were affected by the inherent imperialism of the missions, though exceptions abound.

scholarly journals Centennial-scale precipitation anomalies in the southern Altiplano (18° S) suggest an extratropical driver for the South American summer monsoon during the late Holocene

2019 ◽  
Vol 15 (5) ◽  
pp. 1845-1859 ◽  
Author(s):  
Ignacio A. Jara ◽  
Antonio Maldonado ◽  
Leticia González ◽  
Armand Hernández ◽  
Alberto Sáez ◽  
...  
Keyword(s):  
Summer Monsoon ◽  
Large Scale ◽  
Southern Oscillation ◽  
Atlantic Coast ◽  
Austral Summer ◽  
High Elevation ◽  
South American ◽  
Tropical Andes ◽  
The South ◽  
Precipitation Anomalies

Abstract. Modern precipitation anomalies in the Altiplano, South America, are closely linked to the strength of the South American summer monsoon (SASM), which is influenced by large-scale climate features sourced in the tropics such as the Intertropical Convergence Zone (ITCZ) and El Niño–Southern Oscillation (ENSO). However, the timing, direction, and spatial extent of precipitation changes prior to the instrumental period are still largely unknown, preventing a better understanding of the long-term drivers of the SASM and their effects over the Altiplano. Here we present a detailed pollen reconstruction from a sedimentary sequence covering the period between 4500 and 1000 cal yr BP in Lago Chungará (18∘ S; 4570 m a.s.l.), a high-elevation lake on the southwestern margin of the Altiplano where precipitation is delivered almost exclusively during the mature phase of the SASM over the austral summer. We distinguish three well-defined centennial-scale anomalies, with dry conditions between 4100–3300 and 1600–1000 cal yr BP and a conspicuous humid interval between 2400 and 1600 cal yr BP, which resulted from the weakening and strengthening of the SASM, respectively. Comparisons with other climate reconstructions from the Altiplano, the Atacama Desert, the tropical Andes, and the southwestern Atlantic coast reveal that – unlike modern climatological controls – past precipitation anomalies at Lago Chungará were largely decoupled from north–south shifts in the ITCZ and ENSO. A regionally coherent pattern of centennial-scale SASM variations and a significant latitudinal gradient in precipitation responses suggest the contribution of an extratropical moisture source for the SASM, with significant effects on precipitation variability in the southern Altiplano.

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