scholarly journals Identification of an aquaculture poriferan “Pest with Potential” and its phylogenetic implications

PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e5586 ◽  
Author(s):  
Adrian Galitz ◽  
Steve de C. Cook ◽  
Merrick Ekins ◽  
John N. A. Hooper ◽  
Peter T. Naumann ◽  
...  

Correct identification and classification of sponges is challenging due to ambiguous or misleading morphological features. A particular case is a blue keratose sponge occasionally referred to as the “Blue Photo Sponge” among aquarists, which appears frequently (and in several cases unintended) in private aquaria. This spicule-less species, occasionally specified as Collospongia auris Bergquist, Cambie & Kernan 1990, not only displays a high phenotypic plasticity in growth form and colour, it also proliferates in aquacultures under standard conditions unlike most other sponges. Therefore, this species is regarded as a pest for most aquarists. In turn, the ease of cultivation and propagation in aquacultures qualifies this species as a model organism for a wide array of scientific applications. For these purposes, correct identification and classification are indispensable. We reconstructed ribosomal gene trees and determined this species as Lendenfeldia chondrodes (De Laubenfels, 1954) (Phyllospongiinae), distant to Collospongia auris, and corroborated by skeletal features. Additionally, the resulting phylogeny corroborated major shortcomings of the current Phyllospongiinae classification—its consequences are discussed.

2021 ◽  
pp. 177-191
Author(s):  
Natalia V. Revollo ◽  
G. Noelia Revollo Sarmiento ◽  
Claudio Delrieux ◽  
Marcela Herrera ◽  
Rolando González-José

2019 ◽  
Vol 43 (1) ◽  
pp. 70-89 ◽  
Author(s):  
M.M. Wang ◽  
Q. Chen ◽  
Y.Z. Diao ◽  
W.J. Duan ◽  
L. Cai

The Fusarium incarnatum-equiseti species complex (FIESC) is shown to encompass 33 phylogenetic species, across a wide range of habitats/hosts around the world. Here, 77 pathogenic and endophytic FIESC strains collected from China were studied to investigate the phylogenetic relationships within FIESC, based on a polyphasic approach combining morphological characters, multi-locus phylogeny and distribution patterns. The importance of standardised cultural methods to the identification and classification of taxa in the FIESC is highlighted. Morphological features of macroconidia, including the shape, size and septum number, were considered as diagnostic characters within the FIESC. A multi-locus dataset encompassing the 5.8S nuclear ribosomal gene with the two flanking internal transcribed spacers (ITS), translation elongation factor (EF-1α), calmodulin (CAM), partial RNA polymerase largest subunit (RPB1) and partial RNA polymerase second largest subunit (RPB2), was generated to distinguish species within the FIESC. Nine novel species were identified and described. The RPB2 locus is demonstrated to be a primary barcode with high success rate in amplification, and to have the best species delimitation compared to the other four tested loci.


2020 ◽  
Vol 2020 ◽  
pp. 1-12
Author(s):  
Mengwan Wei ◽  
Yongzhao Du ◽  
Xiuming Wu ◽  
Qichen Su ◽  
Jianqing Zhu ◽  
...  

The classification of benign and malignant based on ultrasound images is of great value because breast cancer is an enormous threat to women’s health worldwide. Although both texture and morphological features are crucial representations of ultrasound breast tumor images, their straightforward combination brings little effect for improving the classification of benign and malignant since high-dimensional texture features are too aggressive so that drown out the effect of low-dimensional morphological features. For that, an efficient texture and morphological feature combing method is proposed to improve the classification of benign and malignant. Firstly, both texture (i.e., local binary patterns (LBP), histogram of oriented gradients (HOG), and gray-level co-occurrence matrixes (GLCM)) and morphological (i.e., shape complexities) features of breast ultrasound images are extracted. Secondly, a support vector machine (SVM) classifier working on texture features is trained, and a naive Bayes (NB) classifier acting on morphological features is designed, in order to exert the discriminative power of texture features and morphological features, respectively. Thirdly, the classification scores of the two classifiers (i.e., SVM and NB) are weighted fused to obtain the final classification result. The low-dimensional nonparameterized NB classifier is effectively control the parameter complexity of the entire classification system combine with the high-dimensional parametric SVM classifier. Consequently, texture and morphological features are efficiently combined. Comprehensive experimental analyses are presented, and the proposed method obtains a 91.11% accuracy, a 94.34% sensitivity, and an 86.49% specificity, which outperforms many related benign and malignant breast tumor classification methods.


1983 ◽  
Vol 40 (11) ◽  
pp. 2019-2024 ◽  
Author(s):  
Terry D. Beacham ◽  
Clyde B. Murray

Male adipose fins of Oncorhynchus species were 30–50% larger than those of same-sized females, the actual amount depending on the species. Accuracy of classification of the standards ranged from 87% in chinook salmon (O. tshawytscha) to 98% in pink salmon (O. gorbuscha). Testing the method on new samples usually resulted in an accuracy of at least 90% correct identification of sex for any species. Relative size of the adipose fin should allow for easy and accurate external identification of the sexes of silver-bright Oncorhynchus.


1997 ◽  
Vol 11 (1) ◽  
pp. 1 ◽  
Author(s):  
A. D. Austin ◽  
and S. A. Field

The morphology of the sclerotised components of the ovipositor system is comprehensively surveyed for scelionid and platygastrid wasps, with information being assessed for 120 genera and 220 species. A diagnosis for the ovipositor system is presented for most genera to complement existing generic descriptions. Two previously described and mechanically different forms of the ovipositor system are recognised: (1) the Ceratobaeus-type that is extended and retracted by antagonistic muscles and (2) the Scelio-type that is operated by changes in hydrostatic pressure, where the ovipositor is extended at the end of an elongate telescopic tube derived from expanded intersegmental membrane between metasomal segments 6 and 7. Comparison of these forms with the supposed ground plan for the Scelionidae strongly indicates that the Scelio-type is apomorphic, that it defines a monophyletic group associated with orthopteran host eggs, and that it comprises the tribes Scelionini, Calliscelionini, most Psilanteridini, Aradophagini, Neoscelionini, Platyscelionini, Doddiellini and four genera misplaced within the Sparasionini and Baryconini (Archaeoteleia Masner, Bracalba Dodd, Chromoteleia Ashmead and Oxyscelio Kieffer), as well as Sceliacanthella Dodd. Until a more robust classification of the superfamily is forthcoming, it is proposed that this group be informally referred to as the 'Scelionini sensu lato'. Further, seven genera (Habroteleia Kieffer, Palpoteleia Kieffer, Anteris Foerster, Fusicornia Risbec, Leptoteleia Kieffer, Opisthacantha Ashmead and Styloteleia Kieffer) are misplaced in the Calliscelionini and Psilanteridini because they possess the Ceratobaeus-type system. Nixonia Masner, Sparasion Latreille and Sceliomorpha Ashmead (Sparasionini) are considered to have the most primitive ovipositor system because they possess a Ceratobaeus-type system, and sub-basally fused lateral and latero-ventral apodemes, the latter being loosely attached to sternite 6. Sparasion and Sceliomorpha also have very short lateral apodemes and this, in conjunction with the form of the apodemes, can be considered to be the ground plan for the superfamily. The Platygastridae all possess a modified ovipositor system but, nonetheless, one that in most cases is extended and retracted by musculature (i.e. Ceratobaeus-type). In particular, the system in most platygastrids is typified by having metasomal tergite 8 and associated cerci missing, the lateral apodemes short and forming a U-shape, and the ovipositor assembly generally robust. Only one of approximately 30 genera examined, Acerotella Masner, has very elongate apodemes, as in the Scelionidae. Many platygastrids also have a pair of latero-ventral apodemes, a presumed plesiomorphic character, rather than a single medial apodeme on stemite 6, which is the case for many Scelionidae. The most highly modified system is found in Isostasius Foerster and some Synopeas (Sactogaster) Foerster, where the ovipositor assembly is coiled vertically or partly so and the apodemes are greatly reduced. Generally, characters associated with the ovipositor system do not provide any independent support for the most recent higher-level classification of platygastrids, although they show substantial potential for more accurate definition of genera. A preliminary cladistic analysis of 14 ovipositor characters supports the monophyly of five clades that correspond to the Scelionini s. l., the Scelionidae (minus the Sparasionini sensu stricto), the Sparasionini s. str., the Platygastridae, and the Sparasioriini s. str. + Platygastridae. Overall, results from this study will provide baseline information on the ovipositor system as a prelude to a more complete phylogenetic analysis of the superfamily including external morphological characters. Although no new classification for the Scelionidae and Platygastridae is proposed, their higher-level taxonomy is reviewed and discussed and cases identified where, on the basis of ovipositor morphology, taxa (tribes and/or genera) apparently form monophyletic groups, and where taxa are misplaced. Finally, the status of the major higher-level groups within the superfamily is discussed, as is the available evidence to support their monophyly.


1989 ◽  
Vol 63 (6) ◽  
pp. 778-800 ◽  
Author(s):  
J. Keith Rigby ◽  
Fan Jiasong ◽  
Zhang Wei

Inozoans are described from patch reefs on the carbonate platform of eastern Sichuan, from the uppermost Permian Laolongdong reefs in the Changxing Formation (Kazanian–Tatarian) at Beipei, northwest of Chongqing, and from Middle and Upper Permian reefs from the Maokou (Kungurian), Wujiaping (Ufimian), and Changxing Formations at Xiangbo, Longlin County, in northwestern Guangxi. Classification of inozoans, particularly late Paleozoic ones, is still in a state of flux, but genera recognized to date can be keyed using the general nature of the spongocoel, canals, and growth form.New genera described are Intratubospongia, Grossotubenella, Cavusonella, and Radicanalospongia. The new species described are Stellispongia radiata, S. minor, Peronidella beipeiensis, P. regulara, P. parva, Intratubospongia typica, I. tenuiperforata, I. multisi-phonata, I. minima, Grossotubenella parallela, Cavusonella caverna, and Radicanalospongia normala. A Corynella that is not identifiable to species and a sphinctozoan-like inozoan(?) sp. A that has a fibrous-appearing internal skeleton but is poorly preserved are also described. Inozoans and other sponges are major frame-builders in the Permian reefs of South China and our fauna is one of the most diverse late Paleozoic assemblages described to date.


2017 ◽  
Vol 21 (3) ◽  
Author(s):  
José Daniel López-Cabrera ◽  
Juan Valentin Lorenzo-Ginori

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