Phylogenetic Analysis of Pigeon Paramyxoviruses Type-1 Identified in Mourning Collared-doves (Streptopelia decipiens) in Namibia, Africa

2018 ◽  
Vol 54 (3) ◽  
pp. 601-606 ◽  
Author(s):  
Umberto Molini ◽  
Gottlieb Aikukutu ◽  
Siegfried Khaiseb ◽  
Giovanni Cattoli ◽  
William G. Dundon
Keyword(s):  
Phylogenetic Analysis

Phylogenetic Analysis of Multiple Heterosexual Transmission Events Involving Subtype B of HIV Type 1

2001 ◽  
Vol 17 (8) ◽  
pp. 689-695 ◽  
Author(s):  
Anna Hayman ◽  
Timothy Moss ◽  
Graham Simmons ◽  
Catherine Arnold ◽  
Edward C. Holmes ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Heterosexual Transmission ◽  
Subtype B ◽  
Hiv Type 1

scholarly journals Genomic Analyses of Potential Novel Recombinant Human Adenovirus C in Brazil

Viruses ◽  
2020 ◽  
Vol 12 (5) ◽  
pp. 508
Author(s):  
Roozbeh Tahmasebi ◽  
Antonio Charlys da Costa ◽  
Kaelan Tardy ◽  
Rory J. Tinker ◽  
Flavio Augusto de Padua Milagres ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Human Adenovirus ◽  
Etiologic Agent ◽  
Viral Metagenomics ◽  
Variable Regions ◽  
Genomic Analyses ◽  
Fiber Proteins ◽  
Full Length Genome ◽  
Complete Genomic

Human Adenovirus species C (HAdV-C) is the most common etiologic agent of respiratory disease. In the present study, we characterized the nearly full-length genome of one potential new HAdV-C recombinant strain constituted by Penton and Fiber proteins belonging to type 89 and a chimeric Hexon protein of types 1 and 89. By using viral metagenomics techniques, we screened out, in the states of Tocantins and Pará, Northern and North regions of Brazil, from 2010 to 2016, 251 fecal samples of children between 0.5 to 2.5 years old. These children were presenting acute diarrhea not associated with common pathogens (i.e., rotavirus, norovirus). We identified two HAdV-C strains in two distinct patients. Phylogenetic analysis performed using all complete genomes available at GenBank database indicated that one strain (HAdV-C BR-245) belonged to type 1. The phylogenetic analysis also indicated that the second strain (HAdV-C BR-211) was located at the base of the clade formed by the newly HAdV-C strains type 89. Recombination analysis revealed that strain HAdV-C BR-211 is a chimera in which the variable regions of Hexon gene combined HAdV-C1 and HAdV-C89 sequences. Therefore, HAdV-C BR-211 strain possesses a genomic backbone of type HAdV-C89 and a unique insertion of HAdV-C1 in the Hexon sequence. Recombination may play an important driving force in HAdV-C diversity and evolution. Studies employing complete genomic sequencing on circulating HAdV-C strains in Brazil are needed to understand the clinical significance of the presented data.

Sequence Note: Phylogenetic Analysis of Protease and Transmembrane Region of HIV Type 1 Group O

2000 ◽  
Vol 16 (11) ◽  
pp. 1075-1081 ◽  
Author(s):  
Chunfu Yang ◽  
Feng Gao ◽  
Peter N. Fonjungo ◽  
Leopold Zekeng ◽  
Guido van der Groen ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Transmembrane Region ◽  
Hiv Type 1

Human T-Lymphotropic Virus Type 1 Prevalence in Northeastern Iran, Sabzevar: An Epidemiologic-Based Study and Phylogenetic Analysis

2012 ◽  
Vol 28 (9) ◽  
pp. 1095-1101 ◽  
Author(s):  
Mahmoud Reza Azarpazhooh ◽  
Kazem Hasanpour ◽  
Mohsen Ghanbari ◽  
S.A. Rahim Rezaee ◽  
Baratali Mashkani ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Virus Type ◽  
T Lymphotropic Virus

Human T-cell lymphotropic virus type 1 provirus and phylogenetic analysis in patients with mycosis fungoides and their family relatives

2006 ◽  
Vol 155 (2) ◽  
pp. 372-378 ◽  
Author(s):  
M. Shohat ◽  
B. Shohat ◽  
D. Mimouni ◽  
G. Pauli ◽  
H. Ellerbrok ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
T Cell ◽  
Mycosis Fungoides ◽  
Virus Type ◽  
Human T Cell

HIV Type 1 Diversity in Northeastern Romania in 2000-2001 Based on Phylogenetic Analysis ofpolSequences from Patients Failing Antiretroviral Therapy

2003 ◽  
Vol 19 (12) ◽  
pp. 1155-1161 ◽  
Author(s):  
Cristian Apetrei ◽  
Diane Descamps ◽  
Gilles Collin ◽  
David L. Robertson ◽  
Ivona Pandrea ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Antiretroviral Therapy ◽  
Hiv Type 1
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