scholarly journals Genome sequencing and analysis of the genome of Acidithiobacillus ferrooxidans strain DLC-5, a heavy metal resistant strain from acid mine drainage in northeast China

2016 ◽  
Author(s):  
Peng Chen ◽  
Ruixiang Xu ◽  
Zheng Yan ◽  
Lei Yan ◽  
Zhengrong Wu ◽  
...  
Keyword(s):  
Acid Mine Drainage ◽  
Genome Sequence ◽  
Acidithiobacillus Ferrooxidans ◽  
Mine Drainage ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Acid Mine ◽  
Rna Genes ◽  
Genomic Encyclopedia

Acidithiobacillus ferrooxidans ( A. ferrooxidans ) is a gram-negative, extremely acidophilic, mesophilic, chemolithotrophic bacterium and the most well-studied acidophilic organism which is usually found in acid environments such as acid mine drainage. The draft genome sequence of A. ferrooxidans ATCC 23270 was first reported in 2000, fourteen years ago. Here we describe the features of this organism, together with the draft genome sequence, and annotation. This is the draft genome sequence from the A. ferrooxidans, and the 3,142,890 bp long single replicon genome with its 32,719 protein-coding and 64 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Bacterial project.

scholarly journals Genome sequencing and analysis of the genome of Acidithiobacillus ferrooxidans strain DLC-5, a heavy metal resistant strain from acid mine drainage in northeast China

2016 ◽  
Author(s):  
Peng Chen ◽  
Ruixiang Xu ◽  
Zheng Yan ◽  
Lei Yan ◽  
Zhengrong Wu ◽  
...  
Keyword(s):  
Acid Mine Drainage ◽  
Genome Sequence ◽  
Acidithiobacillus Ferrooxidans ◽  
Mine Drainage ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Acid Mine ◽  
Rna Genes ◽  
Genomic Encyclopedia

Acidithiobacillus ferrooxidans ( A. ferrooxidans ) is a gram-negative, extremely acidophilic, mesophilic, chemolithotrophic bacterium and the most well-studied acidophilic organism which is usually found in acid environments such as acid mine drainage. The draft genome sequence of A. ferrooxidans ATCC 23270 was first reported in 2000, fourteen years ago. Here we describe the features of this organism, together with the draft genome sequence, and annotation. This is the draft genome sequence from the A. ferrooxidans, and the 3,142,890 bp long single replicon genome with its 32,719 protein-coding and 64 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Bacterial project.

scholarly journals Draft Genome Sequence of Janthinobacterium sp. Strain PC23-8, Isolated from a Freshwater Stream Impacted by Acid Mine Drainage

2019 ◽  
Vol 8 (41) ◽  
Author(s):  
Caitlin E. Clark ◽  
Matthew G. Banyas ◽  
Stephen E. Noell ◽  
David A. Essig
Keyword(s):  
Acid Mine Drainage ◽  
Genome Sequence ◽  
Mine Drainage ◽  
Cyclic Peptide ◽  
Draft Genome ◽  
Gene Clusters ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Acid Mine ◽  
Freshwater Stream

We present the draft genome sequence of Janthinobacterium sp. strain PC23-8, a bacterium isolated from freshwater stream sediment downstream from acid mine drainage. The 6.4-Mb genome sequence of this strain contains several secondary metabolite gene clusters, including one similar to the cyclic peptide jagaricin, synthesized by Janthinobacterium agaricidamnosum.

scholarly journals Draft Genome Sequence of Lawsonia intracellularis Strain E40504, Isolated from a Horse Diagnosed with Equine Proliferative Enteropathy

2017 ◽  
Vol 5 (19) ◽  
Author(s):  
Nandita S. Mirajkar ◽  
Molly R. Kelley ◽  
Connie J. Gebhart
Keyword(s):  
Genome Sequence ◽  
Genomic Island ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Lawsonia Intracellularis ◽  
Protein Coding ◽  
Content Type ◽  
Obligate Intracellular ◽  
Proliferative Enteropathy ◽  
Rna Genes

ABSTRACT Reported herein is the draft genome sequence of equine-origin Lawsonia intracellularis strain E40504, an obligate intracellular bacterium and the etiological agent of equine proliferative enteropathy. The 1.69-Mb draft genome sequence includes 1,380 protein-coding genes and 49 RNA genes, and it lacks a genomic island reported in swine-origin L. intracellularis strain PHE/MN1-00.

scholarly journals Draft Genome Sequence of the Multiple Antibiotic Producer Bacillus velezensis X-BIO-1

2020 ◽  
Vol 9 (50) ◽  
Author(s):  
S. V. Kravchenko ◽  
D. V. Poshvina ◽  
A. V. Vasilchenko ◽  
A. S. Vasilchenko
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Bacillus Velezensis ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Rna Genes

ABSTRACT Here, we describe the draft genome sequence of Bacillus velezensis strain X-BIO-1, which contains 16 contigs, comprising 3,861,135 bp with a G+C content of 46.54%. The annotated draft genome contains 3,710 protein-coding genes and 62 RNA genes. We identified genes responsible for the synthesis of various antibiotics.

scholarly journals Draft Genome Sequence ofBacteroidalesStrain 6E, Isolated from a Rice Paddy Field in Japan

2015 ◽  
Vol 3 (5) ◽  
Author(s):  
Dieter M. Tourlousse ◽  
Takuya Honda ◽  
Norihisa Matsuura ◽  
Akiko Ohashi ◽  
Akio Tonouchi ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Paddy Field ◽  
Draft Genome ◽  
Rice Paddy ◽  
Draft Genome Sequence ◽  
Total Size ◽  
Protein Coding ◽  
Rice Paddy Field ◽  
Paddy Field Soil ◽  
Rna Genes

We generated a high-quality draft genome sequence ofBacteroidalesstrain 6E, a strict anaerobe newly isolated from Japanese rice paddy field soil. The genome consists of 61 contigs, with a total size of 4,436,542 bp and mean G+C content of 45.4%. Annotation predicted 3,620 protein-coding and 54 RNA genes.

scholarly journals Draft Genome Sequence of Mycobacterium colombiense

2017 ◽  
Vol 5 (14) ◽  
Author(s):  
Amar Bouam ◽  
Catherine Robert ◽  
Anthony Levasseur ◽  
Michel Drancourt
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Positive Patient ◽  
Draft Genome Sequence ◽  
Hiv Positive ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Rna Genes

ABSTRACT Mycobacterium colombiense is a rapidly growing mycobacterium initially isolated from the blood of an HIV-positive patient in Colombia. Its 5,854,893-bp draft genome exhibits a G+C content of 67.64%, 5,233 protein-coding genes, and 54 predicted RNA genes.

scholarly journals Draft Genome Sequence of Paenisporosarcina sp. Strain TG-20, a Psychrophilic Bacterium Isolated from the Basal Ice of Taylor Glacier

2012 ◽  
Vol 194 (23) ◽  
pp. 6636-6636
Author(s):  
Jun Hyuck Lee ◽  
Hye Yeon Koh ◽  
Sung Gu Lee ◽  
Shawn Doyle ◽  
Brent C. Christner ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Psychrophilic Bacterium ◽  
Protein Coding ◽  
Content Type ◽  
Basal Ice ◽  
Subsurface Environments ◽  
Taylor Glacier ◽  
Rna Genes

ABSTRACTWe report the draft genome sequence ofPaenisporosarcinasp. strain TG-20, which is 4.12 Mb in size and consists of 4,071 protein-coding genes and 76 RNA genes. The genome sequence ofPaenisporosarcinasp. TG-20 may provide useful information about molecular adaptations that enhance survival in icy subsurface environments.

scholarly journals Draft Genome Sequence of Mycobacterium shimoidei Strain P7336

2018 ◽  
Vol 7 (13) ◽  
Author(s):  
Jamal Saad ◽  
Anthony Levasseur ◽  
Michel Drancourt
Keyword(s):  
Genome Sequence ◽  
Messenger Rna ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Nontuberculous Mycobacterium ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Slow Growing ◽  
Rna Genes

Mycobacterium shimoidei, a slow-growing, nontuberculous mycobacterium initially isolated from a Japanese man, is a rare opportunistic lung pathogen. The 4,842,631-bp draft genome of M. shimoidei strain P7336 exhibits a 65.7% G+C content, 4,643 protein-coding genes, and 57 predicted RNA genes, including 49 tRNAs, 7 rRNA operons, and 1 transfer-messenger RNA.

scholarly journals Draft Genome Sequence ofMycobacterium peregrinumStrain CSUR P2098

2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Shady Asmar ◽  
Nicolás Rascovan ◽  
Catherine Robert ◽  
Michel Drancourt
Keyword(s):  
Genome Sequence ◽  
Genome Analysis ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Mycobacterium Fortuitum ◽  
Type I ◽  
Protein Coding ◽  
Protein Coding Genes ◽  
Rna Genes

Mycobacterium peregrinumis a nonpigmented rapid growing nontuberculosis species belonging to theMycobacterium fortuitumgroup. The draft genome ofM. peregrinumtype I CSUR P2098 comprises 7,109,836 bp exhibiting a 66.23% G+C content, 6,894 protein-coding genes, and 100 predicted RNA genes. Its genome analysis suggests this species differs fromMycobacterium senegalense.

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