scholarly journals Draft genome sequence of extremely acidophilic bacterium Acidithiobacillus ferrooxidans DLC-5 isolated from acid mine drainage in Northeast China

Genomics Data ◽  
2015 ◽  
Vol 6 ◽  
pp. 267-268 ◽  
Author(s):  
Peng Chen ◽  
Lei Yan ◽  
Zhengrong Wu ◽  
Ruixiang Xu ◽  
Suyue Li ◽  
...  
Keyword(s):  
Acid Mine Drainage ◽  
Genome Sequence ◽  
Acidithiobacillus Ferrooxidans ◽  
Northeast China ◽  
Mine Drainage ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Acid Mine ◽  
Acidophilic Bacterium

scholarly journals Genome sequencing and analysis of the genome of Acidithiobacillus ferrooxidans strain DLC-5, a heavy metal resistant strain from acid mine drainage in northeast China

2016 ◽  
Author(s):  
Peng Chen ◽  
Ruixiang Xu ◽  
Zheng Yan ◽  
Lei Yan ◽  
Zhengrong Wu ◽  
...  
Keyword(s):  
Acid Mine Drainage ◽  
Genome Sequence ◽  
Acidithiobacillus Ferrooxidans ◽  
Mine Drainage ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Acid Mine ◽  
Rna Genes ◽  
Genomic Encyclopedia

Acidithiobacillus ferrooxidans ( A. ferrooxidans ) is a gram-negative, extremely acidophilic, mesophilic, chemolithotrophic bacterium and the most well-studied acidophilic organism which is usually found in acid environments such as acid mine drainage. The draft genome sequence of A. ferrooxidans ATCC 23270 was first reported in 2000, fourteen years ago. Here we describe the features of this organism, together with the draft genome sequence, and annotation. This is the draft genome sequence from the A. ferrooxidans, and the 3,142,890 bp long single replicon genome with its 32,719 protein-coding and 64 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Bacterial project.

scholarly journals Genome sequencing and analysis of the genome of Acidithiobacillus ferrooxidans strain DLC-5, a heavy metal resistant strain from acid mine drainage in northeast China

2016 ◽  
Author(s):  
Peng Chen ◽  
Ruixiang Xu ◽  
Zheng Yan ◽  
Lei Yan ◽  
Zhengrong Wu ◽  
...  
Keyword(s):  
Acid Mine Drainage ◽  
Genome Sequence ◽  
Acidithiobacillus Ferrooxidans ◽  
Mine Drainage ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Acid Mine ◽  
Rna Genes ◽  
Genomic Encyclopedia

Acidithiobacillus ferrooxidans ( A. ferrooxidans ) is a gram-negative, extremely acidophilic, mesophilic, chemolithotrophic bacterium and the most well-studied acidophilic organism which is usually found in acid environments such as acid mine drainage. The draft genome sequence of A. ferrooxidans ATCC 23270 was first reported in 2000, fourteen years ago. Here we describe the features of this organism, together with the draft genome sequence, and annotation. This is the draft genome sequence from the A. ferrooxidans, and the 3,142,890 bp long single replicon genome with its 32,719 protein-coding and 64 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Bacterial project.

scholarly journals Draft Genome Sequence of Janthinobacterium sp. Strain PC23-8, Isolated from a Freshwater Stream Impacted by Acid Mine Drainage

2019 ◽  
Vol 8 (41) ◽  
Author(s):  
Caitlin E. Clark ◽  
Matthew G. Banyas ◽  
Stephen E. Noell ◽  
David A. Essig
Keyword(s):  
Acid Mine Drainage ◽  
Genome Sequence ◽  
Mine Drainage ◽  
Cyclic Peptide ◽  
Draft Genome ◽  
Gene Clusters ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Acid Mine ◽  
Freshwater Stream

We present the draft genome sequence of Janthinobacterium sp. strain PC23-8, a bacterium isolated from freshwater stream sediment downstream from acid mine drainage. The 6.4-Mb genome sequence of this strain contains several secondary metabolite gene clusters, including one similar to the cyclic peptide jagaricin, synthesized by Janthinobacterium agaricidamnosum.

scholarly journals Draft Genome Sequence of “ Acidibacillus ferrooxidans ” ITV01, a Novel Acidophilic Firmicute Isolated from a Chalcopyrite Mine Drainage Site in Brazil

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Hivana Dall’Agnol ◽  
Ivan Ñancucheo ◽  
D. Barrie Johnson ◽  
Renato Oliveira ◽  
Laura Leite ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Ferrous Iron ◽  
Mine Drainage ◽  
Draft Genome ◽  
Sulfide Mineral ◽  
Draft Genome Sequence ◽  
Low Grade ◽  
Acidophilic Bacterium ◽  
Northern Brazil

Here, we report the draft genome sequence of “ Acidibacillus ferrooxidans ” strain ITV01, a ferrous iron- and sulfide-mineral-oxidizing, obligate heterotrophic, and acidophilic bacterium affiliated with the phylum Firmicutes . Strain ITV01 was isolated from neutral drainage from a low-grade chalcopyrite from a mine in northern Brazil.

scholarly journals Influence of Monovalent Cations on the Efficiency of Ferrous Ion Oxidation, Total Iron Precipitation, and Adsorptive Removal of Cr(VI) and As(III) in Simulated Acid Mine Drainage with Inoculation of Acidithiobacillus ferrooxidans

Metals ◽  
2018 ◽  
Vol 8 (8) ◽  
pp. 596 ◽  
Author(s):  
Yongwei Song ◽  
Heru Wang ◽  
Jun Yang ◽  
Yanxiao Cao
Keyword(s):  
Heavy Metal ◽  
Acid Mine Drainage ◽  
Acidithiobacillus Ferrooxidans ◽  
Mine Drainage ◽  
Metal Removal ◽  
Heavy Metal Removal ◽  
Monovalent Cations ◽  
Iron Minerals ◽  
Acid Mine ◽  
Removal Efficiencies

Acid mine drainage is highly acidic and contains large quantities of Fe and heavy metal elements. Thus, it is important to promote the transformation of Fe into secondary iron minerals that exhibit strong heavy-metal removal abilities. Using simulated acid mine drainage, this work analyzes the influence of monovalent cations (K+, NH4+, and Na+) on the Fe2+ oxidation and total Fe deposition efficiencies, as well as the phases of secondary iron minerals in an Acidithiobacillus ferrooxidans system. It also compares the Cr(VI) (K2Cr2O7) and As(III) (As2O3) removal efficiencies of different schwertmannites. The results indicated that high concentrations of monovalent cations (NH4+ ≥ 320 mmol/L, and Na+ ≥ 1600 mmol/L) inhibited the biological oxidation of Fe2+. Moreover, the mineralizing abilities of the three cations differed (K+ > NH4+ > Na+), with cumulative Fe deposition efficiencies of 58.7%, 28.1%, and 18.6%, respectively [n(M) = 53.3 mmol/L, cultivation time = 96 h]. Additionally, at initial Cr(VI) and As(III) concentrations of 10 and 1 mg/L, respectively, the Cr(VI) and As(III) removal efficiencies exhibited by schwertmannites acquired by the three mineralization systems differed [n(Na) = 53.3 > n(NH4) = 53.3 > n(K) = 0.8 mmol/L]. Overall, the analytical results suggested that the removal efficiency of toxic elements was mainly influenced by the apparent structure, particle size, and specific surface area of schwertmannite.

scholarly journals Draft Genome Sequence of a Novel Acidophilic Iron-Oxidizing Firmicutes Species, “ Acidibacillus ferrooxidans ” (SLC66 T )

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Ivan Ñancucheo ◽  
Renato Oliveira ◽  
Hivana Dall’Agnol ◽  
D. Barrie Johnson ◽  
Barry Grail ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Type Strain ◽  
Salt Lake ◽  
Draft Genome ◽  
Salt Lake City ◽  
Draft Genome Sequence ◽  
Accelerated Weathering ◽  
Humidity Cell ◽  
Acidophilic Bacterium ◽  
Lake City

Here, we present the draft genome sequence of the type strain of “ Acidibacillus ferrooxidans ,” a mesophilic, heterotrophic, and acidophilic bacterium that was isolated from mine spoilage subjected to accelerated weathering in humidity cell tests carried out by the former U.S. Bureau of Mines in Salt Lake City, UT.

Isolation, Characterization and Phylogenetic Analysis of Acidiphilium-Like Bacteria from Acid Mine Drainage

2007 ◽  
Vol 20-21 ◽  
pp. 473-476 ◽  
Author(s):  
Yan Fei Zhang ◽  
Yu Yang ◽  
Jian She Liu ◽  
Guan Zhou Qiu
Keyword(s):  
Acid Mine Drainage ◽  
Acidithiobacillus Ferrooxidans ◽  
Mine Drainage ◽  
Heterotrophic Bacteria ◽  
Bacterial Strains ◽  
Acid Mine ◽  
Autotrophic Bacteria ◽  
Rrna Sequencing ◽  
Relationship Of ◽  
Leaching Efficiency

The acidophilic heterotrophic bacteria Acidiphilium spp. were considered as a ministrant of Leptospirillum spp., Acidithiobacillus spp. and other autotrophic bacteria in acid mine drainage (AMD). 25 Acidiphilium-like bacterial strains were isolated from eight different mines in China and their physiology was characterized. Their marmatite-bioleaching ability has been investigated and compared with that of a mixed culture of Acidiphilium sp. and Acidithiobacillus ferrooxidans. The results indicated that some Acidiphilium-like strains exhibited a high marmatite-bioleaching ability, which was even higher than that of Acidithiobacillus ferrooxidans. The leaching efficiency was not higher in mixed than in pure culture. The phylogenetic relationship of the 25 Acidiphilium-like strains was analyzed by 16S rRNA sequencing, GyrB sequencing and rep-PCR genomic fingerprinting. The 25 strains and other eight species of Acidiphilium spp. were clustered into three groups.

scholarly journals Draft Genome Sequences of Two Novel Acidimicrobiaceae Members from an Acid Mine Drainage Biofilm Metagenome

2016 ◽  
Vol 4 (1) ◽  
Author(s):  
Ameet J. Pinto ◽  
Jonathan O. Sharp ◽  
Michael J. Yoder ◽  
Robert Almstrand
Keyword(s):  
Heavy Metal ◽  
Acid Mine Drainage ◽  
Mine Drainage ◽  
Draft Genome ◽  
Metabolic Diversity ◽  
Genome Sequences ◽  
Acid Mine ◽  
The Family ◽  
Acidic Environments

Bacteria belonging to the family Acidimicrobiaceae are frequently encountered in heavy metal-contaminated acidic environments. However, their phylogenetic and metabolic diversity is poorly resolved. We present draft genome sequences of two novel and phylogenetically distinct Acidimicrobiaceae members assembled from an acid mine drainage biofilm metagenome.

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