scholarly journals Isolation and genomic analysis of 11-aminoundecanoic acid-degrading bacterium Pseudomonas sp. JG-B from nylon 11 enrichment culture

2020 ◽  
Vol 8 ◽  
pp. 16-20
Author(s):  
Jocelyn Gatz-Schrupp ◽  
Peter Deckard ◽  
Benjamin Hufford ◽  
Steven Ly ◽  
Peter Tupa ◽  
...  
Keyword(s):  
Enrichment Culture ◽  
Genomic Analysis ◽  
Pseudomonas Sp ◽  
Degrading Bacterium ◽  
Nylon 11 ◽  
Aminoundecanoic Acid

scholarly journals Isolation, Characterization, and Genomic Analysis of Pseudomonas sp. Strain SMT-1, an Efficient Fluorene-Degrading Bacterium

2019 ◽  
Vol 15 ◽  
pp. 117693431984351
Author(s):  
Mulugeta Desta ◽  
Weiwei Wang ◽  
Lige Zhang ◽  
Ping Xu ◽  
Hongzhi Tang
Keyword(s):  
Molecular Mechanisms ◽  
Draft Genome ◽  
Genomic Analysis ◽  
Maximum Growth ◽  
Rrna Gene ◽  
Pseudomonas Sp ◽  
Total Size ◽  
Inorganic Ion ◽  
Degrading Bacterium ◽  
Degrading Bacteria

Comprehensive study of novel microbial organisms capable of degrading fluorene is crucial to develop essential strategies for further application on enhanced bioremediation technologies. Many fluorene-degrading bacteria have been studied; however, little information about the genome sequences of these organisms, which would facilitate investigation of the molecular mechanisms of fluorene degradation, is available. In this study, a bacterial strain designated SMT-1, which uses fluorene as its sole carbon source, was isolated from Laogang landfill in Shanghai, People’s Republic of China, and identified as a Pseudomonas sp., based on 16S rRNA gene sequence analysis. Maximum growth and degrading activity of strain SMT-1 were observed at 30°C, pH 7.0 and 200 r/min in mineral salt medium containing 0.4 mm fluorene. We obtained a draft genome sequence of strain SMT-1 to gain insight into the genetic mechanisms for the degradation of aromatic compounds. Sequences greater than 1 kb in length were obtained by Illumina sequencing; strain SMT-1 was found to contain 5542 predicted genes. This working draft genome comprises 68 contigs and DNA scaffolds and has a total size of 6 108 237 bp and a calculated G + C content of 61.59%. Amino acid metabolism clusters were enriched in SMT-1 genes annotation, with the highest abundant observed for the “ABC transporters” subcategories, followed by transcription, energy production and conversion, and inorganic ion transport and metabolism. The genomic information for SMT-1 provides a useful resource for elucidating the molecular mechanism of fluorene catabolism.

Identification and genomic analysis of antifungal property of a tomato root endophyte Pseudomonas sp. p21

2016 ◽  
Vol 110 (3) ◽  
pp. 387-397 ◽  
Author(s):  
Rongqin Ma ◽  
Yi Cao ◽  
Zhiqiang Cheng ◽  
Shaonan Lei ◽  
Wei Huang ◽  
...  
Keyword(s):  
Genomic Analysis ◽  
Pseudomonas Sp ◽  
Antifungal Property ◽  
Tomato Root ◽  
Root Endophyte

The metabolism of p-fluorophenylacetic acid by a Pseudomonas sp. I. Isolation and identification of intermediates in degradation

1971 ◽  
Vol 17 (5) ◽  
pp. 635-644 ◽  
Author(s):  
D. B. Harper ◽  
E. R. Blakley
Keyword(s):  
Sole Carbon Source ◽  
Culture Medium ◽  
Enrichment Culture ◽  
Culture Technique ◽  
Spectroscopic Techniques ◽  
Resting Cells ◽  
Pseudomonas Sp ◽  
Isolation And Identification ◽  
Hydroxyphenylacetic Acid ◽  
Organic Fluorine

A Pseudomonas sp. capable of growing on p-fluorophenylacetic acid as sole carbon source has been isolated using the enrichment culture technique. All the organic fluorine is released into the culture medium as fluoride ion during growth. A number of fluorinated intermediates have been isolated from the culture medium when resting cells were incubated with the substrate. Using infrared, nuclear magnetic resonance, and mass spectroscopic techniques together with chemical degradative procedures, these have been identified as D(+)-monofluorosuccinic acid, trans-3-fluoro-3-hexenedioic acid, (−)-4-carboxymethyl-4-fluorobutanolide, 4-fluoro-2-hydroxyphenylacetic acid, and 4-fluoro-3-hydroxyphenylacetic acid.

Characterization and genomic analysis of highly efficient thermotolerant oil-degrading bacterium Gordonia sp. 1D

2018 ◽  
Vol 64 (1) ◽  
pp. 41-48 ◽  
Author(s):  
Yanina A. Delegan ◽  
Leonid N. Valentovich ◽  
Samira M. Shafieva ◽  
Khudaverdi G. Ganbarov ◽  
Andrey E. Filonov ◽  
...  
Keyword(s):  
Genomic Analysis ◽  
Highly Efficient ◽  
Degrading Bacterium

Complete genome sequence of Pseudomonas sp. strain VLB120 a solvent tolerant, styrene degrading bacterium, isolated from forest soil

2013 ◽  
Vol 168 (4) ◽  
pp. 729-730 ◽  
Author(s):  
Kirsten A.K. Köhler ◽  
Christian Rückert ◽  
Sarah Schatschneider ◽  
Frank-Jörg Vorhölter ◽  
Rafael Szczepanowski ◽  
...  
Keyword(s):  
Forest Soil ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Pseudomonas Sp ◽  
Degrading Bacterium ◽  
Solvent Tolerant

scholarly journals Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica

2013 ◽  
Vol 4 (1) ◽  
Author(s):  
Michael Kube ◽  
Tatyana N. Chernikova ◽  
Yamal Al-Ramahi ◽  
Ana Beloqui ◽  
Nieves Lopez-Cortez ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genomic Analysis ◽  
Functional Genomic ◽  
Degrading Bacterium ◽  
Functional Genomic Analysis

scholarly journals Characterization and genomic analysis of an efficient dibutyl phthalate degrading bacterium Microbacterium sp. USTB-Y

2021 ◽  
Vol 37 (12) ◽  
Author(s):  
Zhenzhen Zhao ◽  
Chao Liu ◽  
Qianqian Xu ◽  
Shahbaz Ahmad ◽  
Haiyang Zhang ◽  
...  
Keyword(s):  
Dibutyl Phthalate ◽  
Genomic Analysis ◽  
Degrading Bacterium

scholarly journals Characterization and genomic analysis of a diesel-degrading bacterium, Acinetobacter calcoaceticus CA16, isolated from Canadian soil

2020 ◽  
Vol 20 (1) ◽  
Author(s):  
Margaret T. Ho ◽  
Michelle S. M. Li ◽  
Tim McDowell ◽  
Jacqueline MacDonald ◽  
Ze-Chun Yuan
Keyword(s):  
Genomic Analysis ◽  
Acinetobacter Calcoaceticus ◽  
Degrading Bacterium
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