scholarly journals Laserocarpum, a new genus of Apiaceae endemic to Greece

2019 ◽  
Vol 88 (3) ◽  
Author(s):  
Krzysztof Spalik ◽  
Aneta Wojewódzka ◽  
Theophanis Constantinidis ◽  
Stephen R. Downie ◽  
Michał Gierek ◽  
...  
Keyword(s):  
Ribosomal Dna ◽  
New Genus ◽  
Sister Group ◽  
Molecular Data ◽  
Nuclear Ribosomal Dna ◽  
Fruit Morphology ◽  
Fruit Characteristics ◽  
Close Relationship ◽  
Of Greece

<em>Laserpitium pseudomeum</em> is an endemic umbellifer of Greece occurring in the mountains of Sterea Ellas and northern Peloponnese. Molecular data indicate that it is not related to its putative congeners, but instead constitutes an isolated lineage. The nuclear ribosomal DNA ITS tree places it as a weakly supported sister group to <em>Portenschlagiella ramosissima</em>, the sole species in its genus, whereas the tree inferred from three noncoding cpDNA loci does not confirm this relationship. <em>Portenschlagiella ramosissima</em> is sometimes placed in <em>Athamanta</em>, an affinity supported neither by molecular data nor by fruit morphology. <em>Laserpitium pseudomeum</em> notably differs from <em>P. ramosissima</em> in vegetative, flower, and fruit characteristics, and no obvious morphological synapomorphies indicate their close relationship. Therefore, we place <em>L. pseudomeum</em> in the newly described genus <em>Laserocarpum</em> and lectotypify the species with the specimen <em>Orphanides 2019</em> (G00766460) at G-Boiss.

The evolution of fruit in Scandiceae subtribe Scandicinae (Apiaceae)

2001 ◽  
Vol 79 (11) ◽  
pp. 1358-1374 ◽  
Author(s):  
Krzysztof Spalik ◽  
Aneta Wojewódzka ◽  
Stephen R Downie
Keyword(s):  
Phylogenetic Trees ◽  
Sister Group ◽  
Molecular Data ◽  
Nuclear Ribosomal Dna ◽  
Bootstrap Support ◽  
Sister Group Relationship ◽  
Vascular Bundles ◽  
Fruit Morphology ◽  
The Family ◽  
Fruit Characters

Evolutionary relationships among 66 representatives of the family Apiaceae, including 37 species of tribe Scandiceae subtribe Scandicinae, were inferred from separate and combined analyses of fruit morphology and anatomy and nuclear ribosomal DNA internal transcribed spacer (ITS) sequences. Phylogenetic trees inferred from analysis of 35 fruit characters were not congruent to those derived from molecular data and, overall, had much lower bootstrap support values than the latter. Contrary to molecular data, fruit characters did not support the monophyly of subtribe Scandicinae. Fruit data do, however, corroborate the monophyly of nearly every genus within Scandicinae, the affinity of members of the "crown" clade—Anthriscus, Kozlovia (including Krasnovia and Neoconopodium), Geocaryum, Myrrhis, and Osmorhiza—that had been identified in previous molecular analyses, and the sister group relationship between the "crown" clade and the genus Scandix. Phylogenies derived from the analysis of combined ITS and fruit characters were congruent to those inferred from molecular data alone. Reconstructions of ancestral character states using the results of the combined analysis suggest that among extant Scandicinae, the fruits of Athamanta have retained the most plesiomorphic characters. Evolutionary tendencies that have occurred in the fruits of Scandicinae include the broadening of the vascular bundles and vittae, the thickening of the cuticle and epidermal cell wall, the origin of bristles from hairs, the appearance of a pedicel-like appendage, the development of a long beak, and lateral wings. These changes are interpreted as adaptations to fruit dispersal and seed defense.Key words: Apiaceae, Scandiceae subtribe Scandicinae, ITS, fruit morphology.

Affinities of the Boletus chromapes group to Royoungia and the description of two new genera, Harrya and Australopilus

2012 ◽  
Vol 25 (6) ◽  
pp. 418 ◽  
Author(s):  
Roy E. Halling ◽  
Mitchell Nuhn ◽  
Todd Osmundson ◽  
Nigel Fechner ◽  
James M. Trappe ◽  
...  
Keyword(s):  
New Genus ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Elongation Factor ◽  
Sister Group ◽  
Molecular Data ◽  
Translation Elongation ◽  
Spore Deposit ◽  
Large Subunit Rdna ◽  
Translation Elongation Factor 1Α

Harrya is described as a new genus of Boletaceae to accommodate Boletus chromapes, a pink-capped bolete with a finely scabrous stipe adorned with pink scabers, a chrome yellow base and a reddish-brown spore deposit. Phylogenetic analyses of large-subunit rDNA and translation elongation factor 1α confirmed Harrya as a unique generic lineage with two species, one of which is newly described (H. atriceps). Some Chinese taxa were recently placed in a separate genus, Zangia, supported by both morphology and molecular data. Multiple accessions from Queensland, Australia, support the synonymy of at least three species in a separate Australian clade in the new genus, Australopilus. The truffle-like Royoungia is also supported as a separate lineage in this clade of boletes. Even though it lacks stipe characters, it possesses the deep, bright yellow to orange pigments in the peridium. Additional collections from Zambia and Thailand represent independent lineages of uncertain phylogenetic placement in the Chromapes complex, but sampling is insufficient for formal description of new species. Specimens from Java referable to Tylopilus pernanus appear to be a sister group of the Harrya lineage.

Molecular data provide new insights into the phylogeny of Cladonotinae (Orthoptera: Tetrigoidea) from China with the description of a new genus and species

Zootaxa ◽  
2020 ◽  
Vol 4809 (3) ◽  
pp. 547-559
Author(s):  
RONG-JIAO ZHANG ◽  
CONG-LIN ZHAO ◽  
FEI-PENG WU ◽  
WEI-AN DENG
Keyword(s):  
Ribosomal Rna ◽  
Phylogenetic Relationships ◽  
New Genus ◽  
Molecular Data ◽  
18S Rrna Gene ◽  
Rrna Gene ◽  
Mitochondrial Cytochrome Oxidase Subunit ◽  
Close Relationship ◽  
Phylogenetic Framework ◽  
Mitochondrial Cytochrome Oxidase

Considerable effort has been devoted to elucidating the phylogenetic relationships of tetrigides. However, there is still no commonly accepted phylogenetic hypothesis. Therefore, the phylogenetic relationships among some subfamilies remain unclear; e.g., Cladonotinae is a controversial group, in which the phylogenetic relationships between genera and the boundaries of some of the included genera are unclear, causing some of the taxa to be difficult to identify. Therefore, an in-depth phylogenetic analysis of Cladonotinae is urgently needed. In this study, a robust phylogenetic framework for the tetrigides was reconstructed based on the combined mitochondrial cytochrome oxidase subunit I (COI), 16S ribosomal RNA (16S rRNA), and nuclear 18S ribosomal RNA (18S rRNA) gene sequences of 25 species belonging to 16 genera of Tetrigoidea from China, which included 13 species from 8 genera of Cladonotinae. Phylogenetic inferences were performed using the combined dataset and Bayesian inference (BI) and Maximum Parsimony (MP) methods, and the phylogenetic tree of Cladonotinae was reconstructed. All inferences based on the results of the present study supported the Cladonotinae subfamily as a polyphyletic group; within the Cladonotinae subfamily, Tetradinodula, and Tuberfemurus were closely related to Tetriginae, while Austrohancockia and Gibbotettix showed a close relationship to the Scelimenidae subfamily. Additionally, a new genus and new species of the Cladonotinae subfamily are described and illustrated: Hainantettix Deng, gen. nov. and Hainantettix strictivertex Deng, sp. nov. 

Phylogenetic relationship of some Onobrychis taxa naturally grown in Turkey based on morphology and nuclear ribosomal DNA ITS Sequences

2016 ◽  
Author(s):  
Süleyman AVCI ◽  
Nilgün Tekin ◽  
Cengiz SANCAK ◽  
Sebahattin ÖZCAN ◽  
Amir Orojpour Marangi
Keyword(s):  
Ribosomal Dna ◽  
Clustering Analysis ◽  
Molecular Data ◽  
Its Sequences ◽  
Nuclear Ribosomal Dna ◽  
Morphological Data ◽  
Nrdna Its ◽  
Neighbor Joining ◽  
Quantitative Characters ◽  
Relationship Of

Phylogenetic relationships were studied based on morphology and nuclear ribosomal DNA internal transcript spacer (nrDNA ITS) sequences in 49 populations of 36 Onobrychis taxa belonging to 5 sections (Dendobrychis, Lophobrychis, Onobrychis, Heliobrychis and Hymenobrychis) naturally grown in Turkey. The morphological data (46 quantitative characters) were standardized and submitted for PCA analysis before the performance of hierarchical clustering analysis. In addition, a 577-bp region of the nrDNA ITS sequences was compared to generate a dendrogram using the neighbor-joining method. According to the obtained results, the Onobrychis genus is clearly divided into the Onobrychis and Sisyrosema subgenera both molecularly and morphologically; however, in terms of molecular data, while the Onobrychis subgenus showed polyphyletic features, the Sisyrosema subgenus had monophyletic features. Additionally, long-wing taxa belonging to Dendobrychis and Onobrychis and O. crista-galli belonging to Lophobrychis located in the same clade in Onobrychis showed polyphyletic features. This finding was confirmed in terms of long-wing taxa as well as morphology and indicated that these three sections were entangled with each other under the Onobrychis subgenus.

scholarly journals The comparison between nuclear ribosomal DNA and chloroplast DNA in molecular systematic study of four sections of genus Dendrobium sw. (orchidaceae)

2016 ◽  
Vol 5 (03) ◽  
pp. 4944 ◽  
Author(s):  
Maryam Moudi* ◽  
Rusea Go
Keyword(s):  
Chloroplast Dna ◽  
Ribosomal Dna ◽  
Morphological Characters ◽  
Molecular Data ◽  
Nuclear Ribosomal Dna ◽  
Phylogenetic Study ◽  
Data Sets ◽  
Molecular Systematic ◽  
Resolution Level ◽  
Reliable Marker

Phylogenetic study of the four sections (Aporum, Crumenata, Strongyle, and Bolbidium) of genus Dendrobium (family Orchidaceae) was conducted using molecular data. Classifications based on morphological characters have not being able to clearly divide these four sections neither do they supported their monophyly origin. Therefore, deeper and detailed analysis especially using molecular data is required to ascertain their status. Molecular evidences were used to clarify their relations either to lump them into one section or reduce them into two. The study has been carried out for the 34 species of Dendrobium using Maximum Parsimony (MP). Three nucleotide sequences data sets from two distinct genomes chloroplast DNA genes (rbcL and matK) and nuclear ribosomal DNA (ITS) were used to construct cladograms. The results that obtained from the Internal Transcribed Spacer (ITS) gene showed that the nuclear genes are reliable marker for the phylogenetic study of Dendrobium compared to chloroplast DNA with low resolution level among sections. 

scholarly journals Morphological ontogeny and molecular analyses of geographic strains of two closely related Neoseiulus species (Acari: Phytoseiidae)

Acarologia ◽  
2021 ◽  
Vol 61 (2) ◽  
pp. 432-452
Author(s):  
Mohamed W. Negm ◽  
Tomoko Matsuda ◽  
Takumi Kayukawa ◽  
Chyi-Chen Ho ◽  
Yu-Tzu Hsu ◽  
...  
Keyword(s):  
Ribosomal Dna ◽  
Related Species ◽  
Molecular Data ◽  
Predatory Mites ◽  
Nuclear Ribosomal Dna ◽  
Immature Stages ◽  
Closely Related Species ◽  
Molecular Analyses ◽  
Neoseiulus Longispinosus ◽  
Morphological And Molecular Data

The predatory mites, Neoseiulus longispinosus (Evans) and N. womersleyi (Schicha) (Phytoseiidae) are two morphologically close species. Although they can be mainly separated by the length of the dorsal seta S5, misidentifications may occur. The present study investigated various strains of the two closely related species collected from Japan, Taiwan and/or Thailand using a combination of morphological and molecular data. We described and illustrated the adults and immature stages. We also sequenced the 28S region of nuclear ribosomal DNA to determine whether these strains represent different species. The two species could be clearly separated based on the length of seta S5 and the ratio of setae Z5/S5. In a 28S tree, the examined strains also formed separate clades with 100% bootstrap values. We conclude that a combination of different methods is often necessary to precisely distinguish these closely related taxa.

scholarly journals A review of Polylekithum Arnold, 1934 and its familial affinities using morphological and molecular data, with description of Polylekithum catahoulensis sp. nov.

2006 ◽  
Vol 51 (4) ◽  
Author(s):  
Stephen Curran ◽  
Vasyl Tkach ◽  
Robin Overstreet
Keyword(s):  
The United States ◽  
Molecular Data ◽  
Nuclear Ribosomal Dna ◽  
Generic Diagnosis ◽  
Representative Species ◽  
Close Relationship ◽  
The Status ◽  
Molecular Phylogenetic ◽  
Morphological And Molecular Data ◽  
The Pearl River

AbstractThe type material of Polylekithum ictaluri, P. halli, and Maculifer chandleri was examined from the United States National Parasite Museum, and we determined that the material was conspecific, making P. halli and M. chandleri junior subjective synonyms of P. ictaluri. Polylekithum catahoulensis sp. nov. was described from material collected from catfishes at the Catahoula Wildlife Refuge, LaSalle Parish, Louisiana, USA, and compared with P. ictaluri collected from catfishes in Reelfoot Lake, Obion County, Tennessee, USA, and the Pearl River, Hancock County, Mississippi, USA. Polylekithum catahoulensis had smaller eggs (77–88 μm long by 51–63 μm wide vs. 94–108 μm by 52–76 μm) and a longer forebody (35–41% of overall body length vs. 29–34%). Comparison of more than 2,400 bp long fragments of nuclear ribosomal DNA (complete ITS and partial 28S regions) strongly supported the status of P. catahoulensis as a new species. Molecular phylogenetic analysis of 28S rDNA gene sequences from Polylekithum as well as representative species from Allocreadiidae, Atractotrematidae, Brachycoeliidae, Callodistomidae, Dicrocoeliidae, Encyclometridae, Gorgoderidae, Haploporidae, Opecoelidae, Plagiorchiidae, and Telorchiidae rooted by Monorchiidae and Lissorchiidae demonstrated that of the families tested, Polylekithum was most closely related to Encyclometridae as a gorgoderoid and not to Allocreadiidae as previously reported. Morphological features of three South American allocreadiids, Allocreadium patagonicum, P. percai, and A. pichi were inconsistent with generic diagnoses of Allocreadium and Polylekithum, so we suggested they belonged in a single unnamed genus similar to Creptotrema. Polylekithum catlai from India was assessed from the description and failed to conform to the generic diagnosis of Polylekithum. Morphology of Caudouterina suggested a close relationship with Polylekithum and not Allocreadiidae.

Lollipopaia minuta from Thailand, a new genus and species of the Diaporthales (Ascomycetes, Fungi) based on morphological and molecular data

2001 ◽  
Vol 79 (9) ◽  
pp. 1099-1106 ◽  
Author(s):  
Patrik Inderbitzin ◽  
Mary L Berbee
Keyword(s):  
Dna Sequences ◽  
New Genus ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Small Subunit ◽  
Bootstrap Support ◽  
New Genus And Species ◽  
Tropical Mycology ◽  
Close Relationship ◽  
Morphological And Molecular Data

In this paper, we describe the new genus and species Lollipopaia minuta from a tropical rain forest in Thailand. The ascomata were long beaked and seated on a pseudoparenchymatous stroma that was erumpent through the bark of a decaying branch. Mature ascomata were readily formed under laboratory conditions. Lollipopaia minuta had ascomatal walls forming a textura intricata in surface view and deliquescent paraphyses. The asci floated freely at maturity and had a nonstaining apical ring. These characters are found in the Diaporthales. However, the habit of the stroma combined with the filiform ascospores distinguished L. minuta from all known genera of the Diaporthales. Thus, a close relationship to taxa outside the Diaporthales was considered. Lollipopaia minuta was similar to Ophioceras or Pseudohalonectria in shape of the ascomata, asci, and ascospores. However, phylogenetic analyses based on small subunit ribosomal DNA sequences confirmed the placement of L. minuta within the Diaporthales with 100% bootstrap support. A closest relative within the Diaporthales was not determined.Key words: Magnaporthaceae, microfungi, taxonomy, tropical mycology.

Atla, a new genus in the Verrucariaceae ( Verrucariales)

2008 ◽  
Vol 40 (04) ◽  
pp. 269-282 ◽  
Author(s):  
Sanja SAVIĆ ◽  
Leif TIBELL
Keyword(s):  
New Species ◽  
Molecular Phylogeny ◽  
Central Europe ◽  
Ribosomal Dna ◽  
New Genus ◽  
Identification Key ◽  
Nuclear Ribosomal Dna ◽  
British Isles ◽  
Three New Species

Abstract:The new genus Atla forms a well-supported clade in a molecular phylogeny based on the ITS1-5.8S-ITS2 and LSU regions of the nuclear ribosomal DNA. The genus has a crustose thallus, a hamathecium at maturity without hyphal elements except for pseudoparaphyses remaining at the ostiolum, and large, muriform spores. Atla wheldonii was previously referred to Polyblastia. Three new species, A. alpina (the type of the new genus), A. palicei and A. praetermissa, are included in the genus and described here as new to science. They were found on calcareous rocks and soil in Northern Scandinavia; A. alpina also occurs in Central Europe, and A. wheldonii likewise in Central Europe, the Pyrenées and in the British Isles. An identification key to the species and a revision of the genus are also provided.

Leucoagaricus viridariorum (Agaricaceae, Agaricales), a new species from Spain

Phytotaxa ◽  
2015 ◽  
Vol 236 (3) ◽  
pp. 226
Author(s):  
Guillermo Munoz ◽  
Agustin Caballero ◽  
Joan Carles Salom ◽  
Enrico Ercole ◽  
Alfredo Vizzini
Keyword(s):  
New Species ◽  
Ribosomal Dna ◽  
Internal Transcribed Spacer ◽  
Molecular Data ◽  
Nuclear Ribosomal Dna ◽  
A New Species

Leucoagaricus viridariorum is proposed as a new species based on material collected in different areas of Spain. This taxon is characterised macroscopically by its small, whitish basidiomes, minutely squamulose-fibrillose pileus, evanescent ascendant annulus and growth in man-made environments. Microscopically, its subglobose to broadly ellipsoid spores, the clavate cheilocystidia and the trichodermic pileipellis are diagnostic. Based on molecular data of the internal transcribed spacer of nuclear ribosomal DNA (nrITS) this species belongs to the Leucoagaricus/Leucocoprinus clade of the Agaricaceae where it is sister to Leucoagaricus amanitoides.

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