The evolution of fruit in Scandiceae subtribe Scandicinae (Apiaceae)

2001 ◽  
Vol 79 (11) ◽  
pp. 1358-1374 ◽  
Author(s):  
Krzysztof Spalik ◽  
Aneta Wojewódzka ◽  
Stephen R Downie
Keyword(s):  
Phylogenetic Trees ◽  
Sister Group ◽  
Molecular Data ◽  
Nuclear Ribosomal Dna ◽  
Bootstrap Support ◽  
Sister Group Relationship ◽  
Vascular Bundles ◽  
Fruit Morphology ◽  
The Family ◽  
Fruit Characters

Evolutionary relationships among 66 representatives of the family Apiaceae, including 37 species of tribe Scandiceae subtribe Scandicinae, were inferred from separate and combined analyses of fruit morphology and anatomy and nuclear ribosomal DNA internal transcribed spacer (ITS) sequences. Phylogenetic trees inferred from analysis of 35 fruit characters were not congruent to those derived from molecular data and, overall, had much lower bootstrap support values than the latter. Contrary to molecular data, fruit characters did not support the monophyly of subtribe Scandicinae. Fruit data do, however, corroborate the monophyly of nearly every genus within Scandicinae, the affinity of members of the "crown" clade—Anthriscus, Kozlovia (including Krasnovia and Neoconopodium), Geocaryum, Myrrhis, and Osmorhiza—that had been identified in previous molecular analyses, and the sister group relationship between the "crown" clade and the genus Scandix. Phylogenies derived from the analysis of combined ITS and fruit characters were congruent to those inferred from molecular data alone. Reconstructions of ancestral character states using the results of the combined analysis suggest that among extant Scandicinae, the fruits of Athamanta have retained the most plesiomorphic characters. Evolutionary tendencies that have occurred in the fruits of Scandicinae include the broadening of the vascular bundles and vittae, the thickening of the cuticle and epidermal cell wall, the origin of bristles from hairs, the appearance of a pedicel-like appendage, the development of a long beak, and lateral wings. These changes are interpreted as adaptations to fruit dispersal and seed defense.Key words: Apiaceae, Scandiceae subtribe Scandicinae, ITS, fruit morphology.

Phylogenetic relationships of the subfamily Pyrgulinae (Gastropoda: Caenogastropoda: Hydrobiidae) with emphasis on the genus Dianella Gude, 1913

Zootaxa ◽  
2005 ◽  
Vol 891 (1) ◽  
pp. 1 ◽  
Author(s):  
Magdalena Szarowska ◽  
Andrzej Falniowski ◽  
FRANK Riedel ◽  
Thomas Wilke
Keyword(s):  
Type Species ◽  
Sister Group ◽  
Molecular Data ◽  
Character Evolution ◽  
Phylogenetic Position ◽  
Sister Group Relationship ◽  
Data Sets ◽  
Sequencing Data ◽  
The Family ◽  
Anatomical Characters

The phylogenetic position of the subfamily Pyrgulinae within the superfamily Rissooidea has been discussed very controversially. Different data sets not only led to different evolutionary scenarios but also to different systematic classifications of the taxon. The present study uses detailed anatomical data for two pyrgulinid taxa, the type species of the subfamily, Pyrgula annulata (Linnaeus, 1767), and the type species of the little known genus Dianella, D. thiesseana (Kobelt, 1878), as well as DNA sequencing data of three gene fragments from representatives of eight rissooidean families to A) infer the phylogenetic position of Pyrgulinae with emphasis on its relationships within the family Hydrobiidae, B) to study the degree of concordance between anatomyand DNAbased phylogenies and C) to trace the evolution of anatomical characters along a multi-gene molecular phylogeny to find the anatomical characters that might be informative for future cladistic analyses. Both anatomical and molecular data sets indicate either a very close or even sister-group relationship of Pyrgulinae and Hydrobiinae. However, there are major conflicts between the two data sets on and above the family level. Notably, Hydrobiidae is not monophyletic in the anatomical analysis. The reconstruction of anatomical character evolution indicates that many of the characters on which the European hydrobioid taxonomy is primarily based upon are problematic. The inability to clearly separate some hydrobiids from other distinct families based on those characters might explain why until only a few years ago, "Hydrobiidae" was a collecting box for numerous rissooidean taxa (mostly species with shells small and lacking any characteristic features). The present study not only stresses the need for comprehensive molecular studies of rissooidean taxa, it also demonstrates that much of the problems surrounding anatomical analyses in rissooidean taxa are due to the lack of comprehensive data for many representatives. In order to aid future comparativeanatomical studies and a better understanding of character evolution in the species-rich family Hydrobiidae, detailed anatomical descriptions for P. annulata and D. thiesseana are provided.Key words: Pyrgulinae, Pyrgula, Dianella, Hydrobiidae, phylogeny, DNA, anatomy, Greece

scholarly journals Laserocarpum, a new genus of Apiaceae endemic to Greece

2019 ◽  
Vol 88 (3) ◽  
Author(s):  
Krzysztof Spalik ◽  
Aneta Wojewódzka ◽  
Theophanis Constantinidis ◽  
Stephen R. Downie ◽  
Michał Gierek ◽  
...  
Keyword(s):  
Ribosomal Dna ◽  
New Genus ◽  
Sister Group ◽  
Molecular Data ◽  
Nuclear Ribosomal Dna ◽  
Fruit Morphology ◽  
Fruit Characteristics ◽  
Close Relationship ◽  
Of Greece

<em>Laserpitium pseudomeum</em> is an endemic umbellifer of Greece occurring in the mountains of Sterea Ellas and northern Peloponnese. Molecular data indicate that it is not related to its putative congeners, but instead constitutes an isolated lineage. The nuclear ribosomal DNA ITS tree places it as a weakly supported sister group to <em>Portenschlagiella ramosissima</em>, the sole species in its genus, whereas the tree inferred from three noncoding cpDNA loci does not confirm this relationship. <em>Portenschlagiella ramosissima</em> is sometimes placed in <em>Athamanta</em>, an affinity supported neither by molecular data nor by fruit morphology. <em>Laserpitium pseudomeum</em> notably differs from <em>P. ramosissima</em> in vegetative, flower, and fruit characteristics, and no obvious morphological synapomorphies indicate their close relationship. Therefore, we place <em>L. pseudomeum</em> in the newly described genus <em>Laserocarpum</em> and lectotypify the species with the specimen <em>Orphanides 2019</em> (G00766460) at G-Boiss.

scholarly journals ­Complete plastid genome sequences of two species of the Neotropical genus Brunellia (Brunelliaceae)

PeerJ ◽  
2020 ◽  
Vol 8 ◽  
pp. e8392 ◽  
Author(s):  
Janice Valencia-D ◽  
José Murillo-A ◽  
Clara Inés Orozco ◽  
Carlos Parra-O ◽  
Kurt M. Neubig
Keyword(s):  
Plastid Genome ◽  
Phylogenetic Analyses ◽  
Sister Group ◽  
Molecular Data ◽  
Bootstrap Support ◽  
Nucleotide Substitutions ◽  
Plastid Genomes ◽  
The Family ◽  
High Bootstrap ◽  
Single Genus

Here we present the first two complete plastid genomes for Brunelliaceae, a Neotropical family with a single genus, Brunellia. We surveyed the entire plastid genome in order to find variable cpDNA regions for further phylogenetic analyses across the family. We sampled morphologically different species, B. antioquensis and B. trianae, and found that the plastid genomes are 157,685 and 157,775 bp in length and display the typical quadripartite structure found in angiosperms. Despite the clear morphological distinction between both species, the molecular data show a very low level of divergence. The amount of nucleotide substitutions per site is one of the lowest reported to date among published congeneric studies (π = 0.00025). The plastid genomes have gene order and content coincident with other COM (Celastrales, Oxalidales, Malpighiales) relatives. Phylogenetic analyses of selected superrosid representatives show high bootstrap support for the ((C,M)O) topology. The N-fixing clade appears as the sister group of the COM clade and Zygophyllales as the sister to the rest of the fabids group.

scholarly journals The First Two Complete Mitochondrial Genomes of Neoephemeridae (Ephemeroptera): Comparative Analysis and Phylogenetic Implication for Furcatergalia

Genes ◽  
2021 ◽  
Vol 12 (12) ◽  
pp. 1875
Author(s):  
Ran Li ◽  
Zhenxing Ma ◽  
Changfa Zhou
Keyword(s):  
Phylogenetic Trees ◽  
Purifying Selection ◽  
Sister Group ◽  
Phylogenetic Position ◽  
Sister Group Relationship ◽  
General Reference ◽  
Protein Coding ◽  
The Family ◽  
Conserved Gene ◽  
Relationship Of

Mayflies of the family Neoephemeridae are widespread in the Holarctic and Oriental regions, and its phylogenetic position is still unstable in the group Furcatergalia (mayflies with fringed gills). In the present study, we determined the complete mitogenomes of two species, namely Potamanthellus edmundsi and Pulchephemera projecta, of this family. The lengths of two mitogenomes were 15,274 bp and 16,031 bp with an A + T content of 73.38% and 73.07%, respectively. Two neoephemerid mitogenomes had a similar gene size, base composition, and codon usage of protein-coding genes (PCGs), and the sequenced gene arrangements were consistent with the putative ancestral insect mitogenomes as understood today. The most variable gene of Furcatergalia mitogenomes was ND2, while the most conserved gene was COI. Meanwhile, the analysis of selection pressures showed that ND6 and ATP8 exhibited a relaxed purifying selection, and COI was under the strongest purifying selection. Phylogenetic trees reconstructed based on two concatenated nucleotide datasets using both maximum likelihood (ML) and Bayesian inference (BI) estimations yielded robust identical topologies. These results corroborated the monophyly of seven studied families and supported the family Leptophlebiidae as being of the basal lineage of Furcatergalia. Additionally, the sister-group relationship of Caenidae and Neoephemeridae was well supported. Methodologically, our present study provides a general reference for future phylogenetic studies of Ephemeroptera at the mitogenome level.

Comparative morphology of extant raptorial Mantispoidea (Neuroptera: Mantispidae, Rhachiberothidae) suggests a non-monophyletic Mantispidae and a single origin of the raptorial condition within the superfamily

Zootaxa ◽  
2021 ◽  
Vol 4992 (1) ◽  
pp. 1-89
Author(s):  
ADRIAN ARDILA-CAMACHO ◽  
CALEB CALIFRE MARTINS ◽  
ULRIKE ASPÖCK ◽  
ATILANO CONTRERAS-RAMOS
Keyword(s):  
Phylogenetic Analysis ◽  
Comparative Morphology ◽  
Sister Group ◽  
Sister Group Relationship ◽  
Wing Venation ◽  
Morphological Studies ◽  
Starting Point ◽  
The Family ◽  
Evolutionary Context ◽  
New Interpretation

Adult external morphology of the extant raptorial Mantispoidea (Insecta: Neuroptera: Mantispidae and Rhachiberothidae) is compared emphasizing the morphology of the subfamily Symphrasinae as a key group to understand the phylogenetic relationships among the members of the superfamily. Plega dactylota Rehn, 1939 is thoroughly characterized in order to exemplify the morphology of the Symphrasinae. Additionally, following a review of the literature and examination of comparative material of Dilaridae, Berothidae, Rhachiberothidae and all Mantispidae subfamilies, a new interpretation of the components of the raptorial apparatus (i.e., head, prothorax, grasping forelegs, as well as integumentary specializations) is presented. Also, wing venation for these groups is reinterpreted, and new homology hypotheses for wing venation are proposed based on tracheation and comparative analyses. Given the high morphological divergence on the genital sclerites within the Mantispoidea, plus the confusing previous usage of neutral terminology and terms referring to appendages across taxonomic and morphological studies, we attempt to standardize, simplify, and situate terminology in an evolutionary context under the “gonocoxite concept” (multi-coxopod hypothesis). The remarkable morphological similarity of the genital sclerites of Symphrasinae and Rhachiberothidae (sensu U. Aspöck & Mansell 1994) with the Nallachinae (Dilaridae) was taken as a starting point to understand the morphology of other Mantispidae subfamilies. Based on these morphological comparisons, we provide a revised phylogenetic analysis of Mantispoidea. This new phylogenetic analysis supports a sister group relationship between the family Rhachiberothidae, comprising Rhachiberothinae and Symphrasinae, and the family Mantispidae, including the subfamily Mantispinae and its sister taxa Drepanicinae and Calomantispinae, which may represent a single subfamily. Based on these analyses, raptorial condition probably evolved a single time in these insects and subsequently became diversified in the two sister clades of the raptorial Mantispoidea.  

Back to the Future? Molecules Take Us Back to the 1925 Classification of the Lembophyllaceae (Bryopsida)

2009 ◽  
Vol 34 (3) ◽  
pp. 443-454 ◽  
Author(s):  
Dietmar Quandt ◽  
Sanna Huttunen ◽  
Ray Tangney ◽  
Michael Stech
Keyword(s):  
Single Species ◽  
Molecular Data ◽  
Nuclear Ribosomal Dna ◽  
New Family ◽  
Morphological Studies ◽  
The Family ◽  
Family Level ◽  
Plastid Markers ◽  
Pleurocarpous Moss

Although the Lembophyllaceae has undergone considerable revision during the last century, the generic and familial level relationships of this pleurocarpous moss family are still poorly understood. To address this problem, a generic revision of the Lembophyllaceae based on molecular data was undertaken. We analyzed two plastid markers, the trnL-trnF and the psbT-psbH region in combination with the ITS2 of nuclear ribosomal DNA. The molecular data reveal that the current circumscription of the family is too narrow and that several genera previously placed in the Lembophyllaceae should be reincluded. The family includes: Bestia, Camptochaete, Dolichomitra, Dolichomitriopsis, Fallaciella, Fifea, Isothecium, Lembophyllum, Looseria stat. nov., Pilotrichella, Rigodium, Tripterocladium, and Weymouthia. Looseria contains a single species: Looseria orbiculata comb. nov. Acrocladium is excluded and provisionally accommodated in the Lepyrodontaceae. Generic limits supported by the molecular data support a return to the early twentieth century family concept of Brotherus. The analyses indicate that the segregate genus Orthostichella is distinct from its parent genus Pilotrichella, probably at the family level. Whereas Pilotrichella is resolved within the Lembophyllaceae, Orthostichella clusters with Porotrichum and Porothamnium forming a clade (OPP-clade) sister to the remaining Neckeraceae and Lembophyllaceae. Hence, the Neckeraceae is paraphyletic. Recognition of the OPP-clade as a new family is desirable but awaits the results of detailed ongoing morphological studies.

The circumscription and systematic position of Carpodetaceae

1997 ◽  
Vol 10 (6) ◽  
pp. 855 ◽  
Author(s):  
Mats H. G. Gustafsson ◽  
Kåre Bremer
Keyword(s):  
New Zealand ◽  
Wood Anatomy ◽  
Solomon Islands ◽  
Sister Group ◽  
Systematic Position ◽  
Sister Group Relationship ◽  
Seed Structure ◽  
Morphological Comparison ◽  
The Family ◽  
Rbcl Sequences

The genus Carpodetus from New Zealand, New Guinea, and the Solomon Islands, traditionally has been included in the extremely heterogeneous Saxifragaceae sensu lato, but on account of morphological peculiarities it has sometimes been classified in its own family. On palynological grounds it has been suggested to belong near the Ericales. Parsimony analyses of matrices comprising rbcL sequences of 80 taxa sampled from the entire Asteridae and Rosidae provide support for a sister group relationship between Carpodetus and a clade comprising the closely related Australian genera Abrophyllum and Cuttsia, also formerly placed in Saxifragaceae sensu lato, but recently shown to belong within the order Asterales sensu lato. A morphological comparison between the three interrelated genera is provided. They have in common an indumentum of thick-walled unicellular hairs with warty cuticle, and are also uniform in wood anatomy as well as fruit and seed structure. It is proposed that the family Carpodetaceae be expanded to encompass Abrophyllum and Cuttsia.

Phylogenetic relationships of the monogenomic species of the wheat tribe, Triticeae (Poaceae), inferred from nuclear rDNA (internal transcribed spacer) sequences

Genome ◽  
1995 ◽  
Vol 38 (2) ◽  
pp. 211-223 ◽  
Author(s):  
C. Hsiao ◽  
N. J. Chatterton ◽  
K. H. Asay ◽  
K. B. Jensen
Keyword(s):  
Phylogenetic Relationships ◽  
Internal Transcribed Spacer ◽  
Phylogenetic Trees ◽  
Parallel Evolution ◽  
Diploid Species ◽  
Its Region ◽  
Molecular Data ◽  
Nuclear Ribosomal Dna ◽  
The Arctic ◽  
Cytogenetic Evidence

Phylogenetic relationships of 30 diploid species of Triticeae (Poaceae) representing 19 genomes were estimated from the sequences of the internal transcribed spacer (ITS) region of nuclear ribosomal DNA. The ITS sequence phylogeny indicated that: (i) each genome group of species is monophyletic, concordant with cytogenetic evidence; (ii) Hordeum (I) and Critesion (H) are basal; (iii) Australopyrum (W) is closely related to Agropyron (P); (iv) Peridictyon (G), Heteranthelium (Q), and Dasypyrum (V) are closely related to Pseudoroegneria (S); (v) most of the annuals, Triticum s.l. (A, B, D), Crithopsis (K), Taeniatherum (T), Eremopyrum (F), Henrardia (O), Secale (R), and two perennials, Thinopyrum (J) and Lophopyrum (E), all of Mediterranean origin, are a monophyletic group. However, phylogenetic trees based on morphology group these Mediteranean species with various perennial lineages of the Arctic-temperate region. The molecular data and biogeography of the tribe suggest that the Mediterranean lineage is derived from the Arctic-temperate lineage and that the two lineages have evolved in parallel. Extensive morphological parallelism apparently obscures the true genealogical history of the tribe when only morphology is considered.Key words: Poaceae, Triticeae, rDNA sequence, molecular phylogeny, parallel evolution.

scholarly journals Cretaceous origin and repeated tertiary diversification of the redefined butterflies

2011 ◽  
Vol 279 (1731) ◽  
pp. 1093-1099 ◽  
Author(s):  
Maria Heikkilä ◽  
Lauri Kaila ◽  
Marko Mutanen ◽  
Carlos Peña ◽  
Niklas Wahlberg
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Relationships ◽  
Evolutionary History ◽  
Sister Group ◽  
Morphological Characters ◽  
Molecular Data ◽  
Bayesian Approaches ◽  
The Family ◽  
Family Level ◽  
Morphological And Molecular Data

Although the taxonomy of the ca 18 000 species of butterflies and skippers is well known, the family-level relationships are still debated. Here, we present, to our knowledge, the most comprehensive phylogenetic analysis of the superfamilies Papilionoidea, Hesperioidea and Hedyloidea to date based on morphological and molecular data. We reconstructed their phylogenetic relationships using parsimony and Bayesian approaches. We estimated times and rates of diversification along lineages in order to reconstruct their evolutionary history. Our results suggest that the butterflies, as traditionally understood, are paraphyletic, with Papilionidae being the sister-group to Hesperioidea, Hedyloidea and all other butterflies. Hence, the families in the current three superfamilies should be placed in a single superfamily Papilionoidea. In addition, we find that Hedylidae is sister to Hesperiidae, and this novel relationship is supported by two morphological characters. The families diverged in the Early Cretaceous but diversified after the Cretaceous–Palaeogene event. The diversification of butterflies is characterized by a slow speciation rate in the lineage leading to Baronia brevicornis , a period of stasis by the skippers after divergence and a burst of diversification in the lineages leading to Nymphalidae, Riodinidae and Lycaenidae.

Inference of higher-order conifer relationships from a multi-locus plastid data setThis paper is one of a selection of papers published in the Special Issue on Systematics Research.

Botany ◽  
2008 ◽  
Vol 86 (7) ◽  
pp. 658-669 ◽  
Author(s):  
Hardeep S. Rai ◽  
Patrick A. Reeves ◽  
Rod Peakall ◽  
Richard G. Olmstead ◽  
Sean W. Graham
Keyword(s):  
Strong Support ◽  
Sister Group ◽  
Higher Order ◽  
Bootstrap Support ◽  
Sister Group Relationship ◽  
Ribosomal Protein Genes ◽  
Conifer Species ◽  
Noncoding Regions ◽  
Selection Of

We reconstructed the broad backbone of conifer phylogeny from a survey of 15–17 plastid loci and associated noncoding regions from exemplar conifer species. Parsimony and likelihood analyses recover the same higher-order relationships, and we find strong support for most of the deep splits in conifer phylogeny, including those within our two most heavily sampled families, Araucariaceae and Cupressaceae. Our findings are broadly congruent with other recent studies, and are inferred with comparable or improved bootstrap support. The deepest phylogenetic split in conifers is inferred to be between Pinaceae and all other conifers (Cupressophyta). Our current gene and taxon sampling does not support a relationship between Pinaceae and Gnetales, observed in some published studies. Within the Cupressophyta clade, we infer well-supported relationships among Cephalotaxaceae, Cupressaceae, Sciadopityaceae, and Taxaceae. Our data support recent moves to recognize Cephalotaxus under Taxaceae, and we find strong support for a sister-group relationship between the two predominantly southern hemisphere conifer families, Araucariaceae and Podocarpaceae. A local hotspot of indel evolution shared by the latter two conifer families is identified in the coding portion of one of the plastid ribosomal protein genes. The removal of the most rapidly evolving plastid characters, as defined using a likelihood-based classification of substitution rates for the taxa considered here, is shown to have little to no effect on our inferences of higher-order conifer relationships.

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