Supplemental Material for 'Systematic review of the frog family Hylidae, with special reference to Hylinae : phylogenetic analysis and taxonomic revision. )Bulletin of the AMNH ; no. 294)'

2005 ◽  
Author(s):  
Julián Faivovich ◽  
Celio F. B. Haddad ◽  
Paulo C. A. Garcia ◽  
Darrel R. Frost ◽  
Jonathan A. Campbell ◽  
...  
Keyword(s):  
Systematic Review ◽  
Phylogenetic Analysis ◽  
Special Reference ◽  
Taxonomic Revision

scholarly journals SYSTEMATIC REVIEW OF THE FROG FAMILY HYLIDAE, WITH SPECIAL REFERENCE TO HYLINAE: PHYLOGENETIC ANALYSIS AND TAXONOMIC REVISION

2005 ◽  
Vol 294 (1) ◽  
pp. 1 ◽  
Author(s):  
JULIÁN FAIVOVICH ◽  
CÉLIO F.B. HADDAD ◽  
PAULO C.A. GARCIA ◽  
DARREL R. FROST ◽  
JONATHAN A. CAMPBELL ◽  
...  
Keyword(s):  
Systematic Review ◽  
Phylogenetic Analysis ◽  
Special Reference ◽  
Taxonomic Revision

scholarly journals Re-Evaluation of the Podosphaera tridactyla Species Complex in Australia

2021 ◽  
Vol 7 (3) ◽  
pp. 171
Author(s):  
Reannon L. Smith ◽  
Tom W. May ◽  
Jatinder Kaur ◽  
Tim I. Sawbridge ◽  
Ross C. Mann ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Powdery Mildew ◽  
Species Complex ◽  
Taxonomic Revision ◽  
Stone Fruit ◽  
Prunus Species ◽  
Wide Range ◽  
Unidentified Species ◽  
The Rose ◽  
Generation Sequencing

The Podosphaera tridactyla species complex is highly variable morphologically and causes powdery mildew on a wide range of Prunus species, including stone fruit. A taxonomic revision of the Po. tridactyla species complex in 2020 identified 12 species, seven of which were newly characterised. In order to clarify which species of this complex are present in Australia, next generation sequencing was used to isolate the fungal ITS+28S and host matK chloroplast gene regions from 56 powdery mildew specimens of stone fruit and ornamental Prunus species accessioned as Po. tridactyla or Oidium sp. in Australian reference collections. The specimens were collected in Australia, Switzerland, Italy and Korea and were collected from 1953 to 2018. Host species were confirmed using matK phylogenetic analysis, which identified that four had been misidentified as Prunus but were actually Malusprunifolia. Podosphaera species were identified using ITS+28S phylogenetic analysis, recognising three Podosphaera species on stone fruit and related ornamental Prunus hosts in Australia. These were Po.pannosa, the rose powdery mildew, and two species in the Po. tridactyla species complex: Po. ampla, which was the predominant species, and a previously unidentified species from peach, which we describe here as Po. cunningtonii.

Dengue viruses circulating in Indonesia: A systematic review and phylogenetic analysis of data from five decades

2019 ◽  
pp. e2037 ◽  
Author(s):  
Harapan Harapan ◽  
Alice Michie ◽  
Benediktus Yohan ◽  
Pei‐Yun Shu ◽  
Mudatsir Mudatsir ◽  
...  
Keyword(s):  
Systematic Review ◽  
Phylogenetic Analysis ◽  
Dengue Viruses

Molecular insights into the phylogenetic placement of the poorly known genus Niceforonia Goin & Cochran, 1963 (Anura: Brachycephaloidea)

Zootaxa ◽  
2018 ◽  
Vol 4514 (4) ◽  
pp. 487
Author(s):  
ANDRÉS R. ACOSTA-GALVIS ◽  
JEFFREY W. STREICHER ◽  
LUIGI MANUELLI ◽  
TRAVIS CUDDY ◽  
RAFAEL O. DE SÁ
Keyword(s):  
Phylogenetic Analysis ◽  
New World ◽  
Taxonomic Revision ◽  
Phylogenetic Inference ◽  
Genetic Distances ◽  
Molecular Phylogenetic Analysis ◽  
Phylogenetic Placement ◽  
Molecular Phylogenetic ◽  
First Time

Among New World direct-developing frogs belonging to the clade Brachycephaloidea (= Terraranae), there are several genera with uncertain phylogenetic placements. One notable example is the genus Niceforonia Goin & Cochran 1963, which includes three species that are endemic to Colombia. Three specimens of the species Niceforonia nana were collected and for the first time the genus is included in a molecular phylogenetic analysis of mitochondrial (mtDNA; 12S and 16S) and nuclear (nucDNA; TYR and RAG1) markers. Molecular phylogenetic inference based on concatenated and separate mtDNA and nucDNA analyses recovered Niceforonia nana nested within Hypodactylus Hedges et al. 2008, rendering the latter genus paraphyletic. Consequently, herein we place the genus Hypodactylus in the synonymy of Niceforonia to resolve the paraphyly and place Niceforonia in the subfamily Hypodactylinae. Based on our revised concept of the genus Niceforonia we conducted preliminary morphological comparisons using specimens and literature descriptions. Finally, Nicefornia nana is quite divergent from other species of Niceforonia (uncorrected genetic distances of ca. 10% 16S and 7% TYR) suggesting that further taxonomic revision may be warranted. 

scholarly journals Taxonomic revision and phylogenetic relationships of Dasyloricaria Isbrücker & Nijssen, 1979 (Siluriformes: Loricariidae), with description of a new species

2016 ◽  
Vol 14 (1) ◽  
Author(s):  
Alejandro Londoño-Burbano ◽  
Roberto E. Reis
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Phylogenetic Relationships ◽  
Taxonomic Revision ◽  
Sister Group ◽  
Valid Species ◽  
Maracaibo Basin ◽  
New Synonyms ◽  
Branchial Arches ◽  
A New Species

ABSTRACT A taxonomic revision and phylogenetic analysis were completed for Dasyloricaria . The genus includes three valid species: D . filamentosa and D . latiura previously included in the genus, and a new species described herein. Dasyloricaria have a restricted trans-Andean distribution, with D . filamentosa occurring at the lower and middle Magdalena, lower Cauca, and Sinu in Colombia, and lago Maracaibo basin in Colombia and Venezuela; D . latiura in the Atrato and the Tuyra basins in Colombia and Panama, respectively; and the new species in the upper and middle Magdalena basin in Colombia. New synonyms for D . filamentosa and D . latiura are proposed, and a lectotype is designated for the latter. Dasyloricaria is herein recognized as monophyletic, with D . filamentosa as the sister group of D . latiura , and the new speciesas sister to that clade. Spatuloricaria is hypothesized to be the sister group of Dasyloricaria based on synapomorphies of the neurocranium, branchial arches and external morphology features. The subtribe Rineloricariina was partially corroborated through the phylogenetic analysis. An identification key for the species of Dasyloricaria is provided.

Taxonomic revision and preliminary phylogenetic analysis of the subgenus Megalostomis (Scaphigenia) Lacordaire (Coleoptera: Chrysomelidae)

2007 ◽  
Vol 38 (3) ◽  
pp. 335-359 ◽  
Author(s):  
Sergio Roig-Juñent ◽  
Martha Domínguez ◽  
Federico Agrain
Keyword(s):  
Phylogenetic Analysis ◽  
Arid Regions ◽  
Cladistic Analysis ◽  
Taxonomic Revision ◽  
Morphological Characters ◽  
Distribution Data ◽  
Species Status ◽  
Systematic Revision ◽  
Male And Female ◽  
Preliminary Phylogenetic Analysis

AbstractThe subgenus M. (Scaphigenia) Lacordaire includes six species distributed in arid regions of South America. A systematic revision of this subgenus is presented, including re-descriptions and an update of distribution data of the six species. A preliminary cladistic analysis is performed to test the relationships among the species of the subgenus and if the morphological characters used are suitable. A key is presented to separate the seven subgenera of Megalostomis Chevrolat as well as a key for the species of the subgenus M. (Scaphigenia). Male aedeagus internal sac of the nine studied taxa are described and illustrated. This constitutes the first internal sac descriptions for members of this subtribe and could help clarify the homology of such structures within Cryptocephalinae. M. (S) consimilis Achard is reassigned to the species status on the base of genitalic characters. The cladistic analysis was done using forty-one characters from adult external morphology and male and female genitalia. Two species of two different subgenera of Megalostomis: M. (Megalostomis), and M. (Heterostomis) Lacordaire, and one representative of the genus Themesia Lacordaire were selected as out groups. Results were obtained by implicit enumeration using parsimony software. Three equally parsimonious trees were obtained of 45 steps, Ri=0.952, and Ci= 0.941. Support of each group was evaluated by Jacknifing, Bootstrap and Bremer values. Relationships between species are discussed.

Integrative Taxonomy of Australian Metopia (Sarcophagidae: Miltogramminae) Reveals a New Species and Challenges Traditional Phylogeny

2020 ◽  
Vol 4 (6) ◽  
Author(s):  
Nikolas P Johnston ◽  
James F Wallman ◽  
Thomas Pape
Keyword(s):  
Phylogenetic Analysis ◽  
Species Complex ◽  
Molecular Phylogenetics ◽  
Taxonomic Revision ◽  
Integrated Approach ◽  
Integrative Taxonomy ◽  
Morphological Data ◽  
Australian Species ◽  
A New Species ◽  
Generic Relationships

Abstract A taxonomic revision of all Australian species of Metopia Meigen (Sarcophagidae: Miltogramminae) is completed using an integrated approach combining molecular and morphological data. Metopia nudibasis (Malloch) is redescribed as a species complex and a new endemic Australian species, Metopia sputnik sp. n., is described. Evidence is presented that Metopia sauteri (Townsend) is absent from Australia and this species is therefore removed from the known Australian fauna. Molecular phylogenetics is used to reconstruct interspecific and generic relationships and support morphology-based species hypotheses. Phylogenetic analysis splits Metopia Meigen into two clades, separated by Aenigmetopia Malloch, rendering the former genus nonmonophyletic. The implications of this are discussed.

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