scholarly journals Identification of differentially methylated regions using streptavidin bisulfite ligand methylation enrichment (SuBLiME), a new method to enrich for methylated DNA prior to deep bisulfite genomic sequencing

Epigenetics ◽  
2013 ◽  
Vol 8 (1) ◽  
pp. 113-127 ◽  
Author(s):  
Jason P. Ross ◽  
Jan M. Shaw ◽  
Peter L. Molloy
Keyword(s):  
New Method ◽  
Genomic Sequencing ◽  
Differentially Methylated Regions ◽  
Bisulfite Genomic Sequencing ◽  
Methylated Dna

DNA methylation mapping by tag-modified bisulfite genomic sequencing

2006 ◽  
Vol 355 (1) ◽  
pp. 50-61 ◽  
Author(s):  
Weiguo Han ◽  
Stephane Cauchi ◽  
James G. Herman ◽  
Simon D. Spivack
Keyword(s):  
Dna Methylation ◽  
Genomic Sequencing ◽  
Bisulfite Genomic Sequencing

scholarly journals Chemistry of Bisulfite Genomic Sequencing; Advances and Issues

2007 ◽  
Vol 51 (1) ◽  
pp. 47-48 ◽  
Author(s):  
H. Hayatsu ◽  
K. Negishi ◽  
M. Shiraishi ◽  
K. Tsuji ◽  
K. Moriyama
Keyword(s):  
Genomic Sequencing ◽  
Bisulfite Genomic Sequencing

Bisulfite genomic sequencing of DNA from dried blood spot microvolume samples

2012 ◽  
Vol 6 (3) ◽  
pp. 306-309 ◽  
Author(s):  
Hongmei Xu ◽  
Yun Zhao ◽  
Zhiping Liu ◽  
Wei Zhu ◽  
Yueqin Zhou ◽  
...  
Keyword(s):  
Dried Blood Spot ◽  
Genomic Sequencing ◽  
Bisulfite Genomic Sequencing ◽  
Blood Spot

scholarly journals DNA methylation analysis by digital bisulfite genomic sequencing and digital MethyLight

2008 ◽  
Vol 36 (14) ◽  
pp. 4689-4698 ◽  
Author(s):  
D. J. Weisenberger ◽  
B. N. Trinh ◽  
M. Campan ◽  
S. Sharma ◽  
T. I. Long ◽  
...  
Keyword(s):  
Dna Methylation ◽  
Genomic Sequencing ◽  
Methylation Analysis ◽  
Bisulfite Genomic Sequencing ◽  
Dna Methylation Analysis

Profiling DNA Methylation by Bisulfite Genomic Sequencing: Problems and Solutions

2004 ◽  
pp. 169-180 ◽  
Author(s):  
Liang Liu ◽  
Rebecca C. Wylie ◽  
Nathaniel J. Hansen ◽  
Lucy G. Andrews ◽  
Trygve O. Tollefsbol
Keyword(s):  
Dna Methylation ◽  
Genomic Sequencing ◽  
Bisulfite Genomic Sequencing ◽  
Sequencing Problems ◽  
Problems And Solutions

scholarly journals SINE Retroposons Can Be Used In Vivo as Nucleation Centers for De Novo Methylation

2000 ◽  
Vol 20 (10) ◽  
pp. 3434-3441 ◽  
Author(s):  
Philippe Arnaud ◽  
Chantal Goubely ◽  
Thierry Pélissier ◽  
Jean-Marc Deragon
Keyword(s):  
Dna Replication ◽  
Transposable Elements ◽  
De Novo ◽  
Genomic Sequencing ◽  
Methylated Dna ◽  
Short Interspersed Elements ◽  
Sequencing Technique ◽  
Lagging Strand ◽  
De Novo Methylation

ABSTRACT SINEs (short interspersed elements) are an abundant class of transposable elements found in a wide variety of eukaryotes. Using the genomic sequencing technique, we observed that plant S1 SINE retroposons mainly integrate in hypomethylated DNA regions and are targeted by methylases. Methylation can then spread from the SINE into flanking genomic sequences, creating distal epigenetic modifications. This methylation spreading is vectorially directed upstream or downstream of the S1 element, suggesting that it could be facilitated when a potentially good methylatable sequence is single stranded during DNA replication, particularly when located on the lagging strand. Replication of a short methylated DNA region could thus lead to the de novo methylation of upstream or downstream adjacent sequences.

Sign in / Sign up

Export Citation Format

Share Document