scholarly journals DNA methylation analysis by digital bisulfite genomic sequencing and digital MethyLight

2008 ◽  
Vol 36 (14) ◽  
pp. 4689-4698 ◽  
Author(s):  
D. J. Weisenberger ◽  
B. N. Trinh ◽  
M. Campan ◽  
S. Sharma ◽  
T. I. Long ◽  
...  
Keyword(s):  
Dna Methylation ◽  
Genomic Sequencing ◽  
Methylation Analysis ◽  
Bisulfite Genomic Sequencing ◽  
Dna Methylation Analysis

DNA-Methylation Analysis by the Bisulfite-Assisted Genomic Sequencing Method

2003 ◽  
pp. 143-154 ◽  
Author(s):  
Petra Hajkova ◽  
Osman El-Maarri ◽  
Sabine Engemann ◽  
Joachim Oswald ◽  
Alexander Olek ◽  
...  
Keyword(s):  
Dna Methylation ◽  
Genomic Sequencing ◽  
Methylation Analysis ◽  
Sequencing Method ◽  
Dna Methylation Analysis

scholarly journals P46.03 DNA Methylation Analysis in Smokers and Non-Smokers (Passive and ex-Smokers)

2021 ◽  
Vol 16 (3) ◽  
pp. S490
Author(s):  
D.M. Aguilar-Beltrán ◽  
A.G. Alcázar-Ramos ◽  
A.L. Vega-Rodríguez ◽  
D.G. García-Gutiérrez ◽  
A.D. Bertadillo-Jilote ◽  
...  
Keyword(s):  
Dna Methylation ◽  
Methylation Analysis ◽  
Dna Methylation Analysis

scholarly journals DNA Methylation in Solid Tumors: Functions and Methods of Detection

2021 ◽  
Vol 22 (8) ◽  
pp. 4247
Author(s):  
Andrea Martisova ◽  
Jitka Holcakova ◽  
Nasim Izadi ◽  
Ravery Sebuyoya ◽  
Roman Hrstka ◽  
...  
Keyword(s):  
Dna Methylation ◽  
Solid Tumors ◽  
Epigenetic Modification ◽  
Single Gene ◽  
Restriction Enzymes ◽  
Methylation Analysis ◽  
Cpg Dinucleotides ◽  
Sequencing Technologies ◽  
Genome Level ◽  
Dna Methylation Analysis

DNA methylation, i.e., addition of methyl group to 5′-carbon of cytosine residues in CpG dinucleotides, is an important epigenetic modification regulating gene expression, and thus implied in many cellular processes. Deregulation of DNA methylation is strongly associated with onset of various diseases, including cancer. Here, we review how DNA methylation affects carcinogenesis process and give examples of solid tumors where aberrant DNA methylation is often present. We explain principles of methods developed for DNA methylation analysis at both single gene and whole genome level, based on (i) sodium bisulfite conversion, (ii) methylation-sensitive restriction enzymes, and (iii) interactions of 5-methylcytosine (5mC) with methyl-binding proteins or antibodies against 5mC. In addition to standard methods, we describe recent advances in next generation sequencing technologies applied to DNA methylation analysis, as well as in development of biosensors that represent their cheaper and faster alternatives. Most importantly, we highlight not only advantages, but also disadvantages and challenges of each method.

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