scholarly journals Database Tools to Meet the Nagoya Protocol Requirements in a Collection Management System

2019 ◽  
Vol 3 ◽  
Author(s):  
Anniina Kuusijärvi ◽  
Ville-Matti Riihikoski ◽  
Samuli Lehtonen ◽  
Gunilla Ståhls ◽  
Marko Hyvärinen ◽  
...  
Keyword(s):  
Natural History ◽  
Genetic Resources ◽  
Management System ◽  
Biological Diversity ◽  
Genetic Resource ◽  
Third Parties ◽  
Ex Situ ◽  
Collection Management ◽  
Nagoya Protocol ◽  
Collection Management System

The Nagoya Protocol (NP) of the Convention on Biological Diversity requires that genetic resource holders and users obtain, preserve and keep relevant documentation. Users and third parties need to be informed on terms of access, which utilisation is allowed, and which benefits need to be shared when respective genetic resources or associated traditional knowledge is utilised in the meaning of the NP. Following the recommendations in the Code of Conduct & Best Practices of the Consortium of European Taxonomic Facilities (CETAF) CETAF Legislations and Regulations Liaison Group 2019, institutions should implement appropriate data management systems to support compliance with the protocol and keep records on acquisition of biological material, utilization of genetic resources, transfers to third parties, benefits derived and shared, and deaccessioning of specimens or disposal of consumed samples. Here we describe how we have implemented the first set of tools to meet the NP requirements in the Kotka Collection Management System (CMS), which is used by eleven Natural History Museums in Finland. The Kotka CMS is used for storing and managing specimen data and for handling material transactions (loans, exchanges, donations and consumptive loans). Users can enter and store all necessary documentation for both incoming and outgoing material as material transactions, which hold information on e.g., the transaction type, description of the material, important dates, correspondent organization and contact person. Specimens are linked to transactions by their unique identifiers and each transaction also has a unique stable identifier. The first version of the tools for meeting the requirements of the Nagoya protocol on both in situ and ex situ accession of genetic resources have been integrated into the transaction section of the system. For genetic resource users to be able to enter, save and provide all the required information about an incoming genetic resource, we have implemented a set of fields to be completed in the transactions in Kotka CMS (Fig. 1). Users can record, for example, a possible IRCC number (Internationally Recognized Certificate of Compliance), acquisition date and providing country, description of the material, information on Prior Informed Consent, Mutually Agreed Terms, Material Transfer Agreement and other possible permits. The Finnish genomic resource legislation requires a notification within one month of acquisition to the Competent National Authority (CNA; The Finnish Environment Institute and Natural Resources Institute Finland) for any imported genetic resources. The required data for the notification is compiled in Kotka CMS and then sent to the CNA. All the documentation and conditions regulating the utilisation of each specimen and derived samples must follow with the specimen data at all times. To accomplish this all the necessary information and documents are linked from the material transactions to the relevant specimens by unique specimen or sample identifiers. In the specimen view page, links to the full transaction details and history are given, as a single specimen or a derived sample can be part of several different types of transactions. Users also see a summary of the transaction information directly in the specimen view, most importantly whether the specimen is available for genetic research or has any restrictions for use. The Kotka CMS transaction section makes use of the Application Programming Interface (API) provided by the Access and Benefit Sharing Clearing House (ABS-CH). Using the API, Kotka CMS validates the IRCC number if given and provides links to the ABS-CH, for example to the relevant country profile page, the contact details of the CNA, and specific requirements for access to genetic resources when applicable. This way, we provide Kotka CMS users up-to-date information from the original source to support their genetic resource management. We will further improve and develop the tools during the years 2019-2020. Now that the first version is in use, we will make adjustments according to user feedback. We also have a few changes planned, for example, the tools for transferring the necessary information on permits and other details with outgoing specimens to a user in another institution abroad will be updated. All users in Finnish natural history institutions have access to all the information directly in Kotka CMS, as it is a national system. Additionally, both specimen and transaction information searchability will be refined.

scholarly journals DINA: Open Source and Open Services - A modern approach for natural history collection management systems and research

2019 ◽  
Vol 3 ◽  
Author(s):  
Falko Glöckler ◽  
James Macklin ◽  
Fredrik Ronquist ◽  
Jana Hoffmann
Keyword(s):  
Natural History ◽  
Open Source ◽  
Management System ◽  
Research Data ◽  
Collection Management ◽  
Modern Approach ◽  
Natural History Collection ◽  
Collection Management System ◽  
Model Complex ◽  
Code Development

The DINA Consortium (“DIgital information system for NAtural history data”, https://dina-project.net ) was formed in order to provide a framework for like-minded large natural history collection-holding institutions to collaborate through a distributed Open Source development model to produce a flexible and sustainable collection management system. Target collections include zoological, botanical, mycological, geological and paleontological collections, living collections, biodiversity inventories, observation records, and molecular data. DINA is funded by the participating member institutions. DINA Core Members are organizations or individuals who commit at least one half-time equivalent of resources to the development of the consortium goals, at least half of which should be available for code development. The DINA system is architected as a loosely-coupled set of several web-based modules. The conceptual basis for this modular ecosystem is a compilation of comprehensive guidelines for Web application programming interfaces (APIs) to guarantee the interoperability of its components. Thus, all DINA components can be modified or even replaced by other components without crashing the rest of the system as long as they are DINA compliant. Furthermore, the modularity enables the institutions to host only the components they need. DINA focuses on an Open Source software philosophy and on community-driven open development, so the contributors share their development resources and expertise outside of their own institutions. One of the overarching reasons to develop a new collection management system is the need to better model complex relationships between collection objects (typically specimens), research data and associated workflows. We will present the enhancements provided by the approach of the DINA system focussing on the flexibility to plug in compliant components and accommodate additional (meta-)data and specimen related research data with the help of a generic data module. Furthermore, we will discuss challenges in the governance of the development activities such as organizing the distributed code development of the core modules, the code review process and the choice of the software stack. These organizational challenges will be overcome with the help of a revised Memorandum of Understanding.

scholarly journals ACCESS AND BENEFIT SHARING UNDER NAGOYA PROTOCOL AND SUSTAINABLE DEVELOPMENT: A CRITICAL ANALYSIS

2015 ◽  
Vol 9 (3) ◽  
pp. 38-45
Author(s):  
STELLINA JOLLY
Keyword(s):  
Sustainable Development ◽  
Genetic Resources ◽  
Biological Diversity ◽  
Environmental Law ◽  
Developing Nations ◽  
Benefit Sharing ◽  
Convention On Biological Diversity ◽  
Access And Benefit Sharing ◽  
Nagoya Protocol ◽  
Equitable Sharing

The debate over control and ownership of natural and bio genetic resources has a chequered history in International environmental law. Historically genetic resources were considered and acknowledged as part of common heritage of mankind. But with the development of technologies and the heightened north south divide over the issue of sovereign right over natural resources the developing nations became extremely concerned with the exploitation of biological and Genetic resources. Access to benefit sharing (ABS) was considered as an answer to balance the interests of developed and developing nations and to conserve and protect bio diversity. Adopted on October 2010 in Nagoya, Japan by the Parties to the Convention on Biological Diversity (CBD) of 1992, the Nagoya Protocol on Access to Genetic Resources and the Fair and Equitable Sharing of Benefits Arising from their Utilization (NP) has come into force after its 50th ratification on 2013. Nagoya protocol details on procedure for access and benefit sharing, disclosure mechanism, principles of transparency and democracy. The paper analyses the protection of access and benefit sharing envisaged under Nagoya protocol and its possible role in promoting sustainable development in the develoing nations. 

Conservation of Fruit Tree Genetic Resources and Their Use in the Breeding Process

2017 ◽  
Vol 11 (1) ◽  
pp. 66-69 ◽  
Author(s):  
Mihai Botu ◽  
Ion Botu ◽  
Gheorghe Achim ◽  
Silvia Preda ◽  
Anca Scutelnicu ◽  
...  
Keyword(s):  
Genetic Resources ◽  
Biological Diversity ◽  
Fruit Tree ◽  
Ex Situ ◽  
Convention On Biological Diversity ◽  
Sweet Chestnut ◽  
Ex Situ Collections ◽  
Fruit Growing ◽  
New Varieties ◽  
The University

Abstract Conservation of fruit tree biodiversity is important for the mankind according to the Convention on Biological Diversity. In Romania, due to favorable environmental conditions, numerous genetic resources of plum, apple, walnut, hazelnut, sweet chestnut and other fruit crops are present. Identification, evaluation and conservation of fruit genetic resources activities were launched in 1970’ in order to limit the loss of the biodiversity due to erosion and genetic vulnerability. Fruit Growing Research & Extension Station (SCDP) of Valcea, which is belonging now to the University of Craiova, was assigned to deal with conservation of genetic resources for the Prunus, Juglans, Corylus and Castanea genera. As result, national hazelnut collection, the sweet chestnut collection and a part of the plum and walnut national collections are located here. Genetic resources of Malus, Pyrus, Sambucus, Carya and Salix are hold in the active collections too. The ex situ collections include 1160 accessions, out of those 48 species, 533 cultivars and 565 other types like hybrids, biotypes, mutants, etc. Autochthonous or ‘original’ accessions include 173 local cultivars and 565 other genotypes. Breeding activity based on valuable germplasm conducted to releasing of a total number of 31 cultivars and 8 rootstocks registered in the Romanian Official Catalogue for Varieties, 15 varieties have been patented in Romania and for one by CPVO. Identification, in situ evaluation, collection, ex situ evaluation, propagation and regeneration activities regarding fruit tree genetic resources have to be continued in order to conserve the local fruit tree biodiversity and to value it through breeding and use of the new varieties in the orchards.

scholarly journals What to do with audiovisual carriers after their digitization?

2017 ◽  
Author(s):  
Brecht Declercq ◽  
Loes Nijsmans
Keyword(s):  
Decision Making ◽  
Life Span ◽  
Management System ◽  
Best Interests ◽  
Collection Management ◽  
Collection Management System ◽  
Digital Collection ◽  
Preservation Conditions ◽  
Decision Making Framework ◽  
Value Preservation

Both traditional and more recent audiovisual carriers degrade. Even CD-ROMs have typically only a ten-year expected life span. In addition, playback equipment for both analogue and digital carriers will ultimately grow scarcer and more expensive to repair or replace. Archives and museums are inevitably faced with the decision of whether to preserve audiovisual carriers after their content has been digitized. This paper o ers a draft decision- making framework developed by the Flemish Institute of Archiving (VIAA). Assuming that an institution already has a digital collection management system in place, the proposed framework addresses the concepts of favourability, possibility, value, preservation conditions and the risk for other carriers through a series of questions. The paper also addresses the disposal of carriers, should an organization decide that disposal is in the best interests of its collections.

scholarly journals Repatriation of Augmented Information to an Institutional Database

2018 ◽  
Vol 2 ◽  
pp. e26479
Author(s):  
Sharon Grant ◽  
Janeen Jones ◽  
Kate Webbink ◽  
Rob Zschernitz
Keyword(s):  
Information System ◽  
Data Quality ◽  
Management System ◽  
Real Life ◽  
Lessons Learned ◽  
Collection Management ◽  
Network Information ◽  
Field Museum ◽  
Collection Management System ◽  
Data Pipeline

On the 9th of April 2010 the Field Museum received a momentous email from the ORNIS (ORnithology Network Information System) team informing them that they could now access the products of a nationwide georeferencing project; its bird collection could be, quite literally, put on the map. On the 7th of August 2017 those data (along with the sister datasets from FISHNet (FISH NETwork) and MaNIS (Mammal Network Information System) finally made their way into the Museum’s collection management system. It's easy to get data out, why is it so hard to get it back? To make it easier, what do we need to do in terms of coordination, staffing, and/or technological resources? How can tools like data quality flags better accommodate the needs of data-providers as well as data-users elsewhere along the collections data pipeline? We present a real life case studyof repatriating an enhanced dataset to its institute of origin, including details on timelines, estimates of effort, and lessons learned. The best laid repatriation protocols might not prepare us for everything, but following them more closely might save us some sanity.

scholarly journals Past, Present, and Future of Fruit Germplasm Exploration

HortScience ◽  
2007 ◽  
Vol 42 (2) ◽  
pp. 203-204
Author(s):  
Kim E. Hummer
Keyword(s):  
Genetic Resources ◽  
Biological Diversity ◽  
New Technologies ◽  
Plant Genetic Resources ◽  
Ex Situ ◽  
Convention On Biological Diversity ◽  
Remote Communication ◽  
Fruit Species ◽  
Wild Fruit ◽  
Food And Agriculture

The fruits of the earth have healed, nurtured, and intrigued humanity throughout history. Cultivated fruit species have complex genome that will continue to require the input of novel genetic resources. Prospecting for wild fruit species will continue. The global nature of science and commerce will drive the demand to expand available genetic resources for fruit improvement. New technologies will enable future explorers to reach remote sites and species. Recent advances, such as geopositioning and remote-communication devices, will be used to a greater degree for targeting specific collection sites and documenting records of origin. The sovereignty of countries over their plant genetic resources, as specified by the Convention on Biological Diversity and the International Treaty on Plant Genetic Resources for Food and Agriculture, will continue to be a cornerstone for negotiating bilateral agreements and plant exchange. Although this could be considered a limitation to plant exploration in some situations, global strategies now in conceptual infancy will be developed to encourage and support ex situ preservation and continued plant exchange for long-term conservation and humanitarian benefit.

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