scholarly journals Phylogeography of the Poecilimon ampliatus species group (Orthoptera: Tettigoniidae) in the context of the Pleistocene glacial cycles and the origin of the only thelytokous parthenogenetic phaneropterine bush-cricket

2021 ◽  
Vol 79 ◽  
pp. 401-418
Author(s):  
Simeon Borislavov Borissov ◽  
Georgi Hristov Hristov ◽  
Dragan Petrov Chobanov
Keyword(s):  
Species Group ◽  
Sister Species ◽  
Western Balkans ◽  
Glacial Cycles ◽  
Niche Modelling ◽  
Systematic Revision ◽  
Climatic Oscillations ◽  
Ecological Requirements ◽  
Parthenogenetic Reproduction ◽  
Bush Cricket

Abstract Parthenogenetic lineages are known to rapidly colonize large areas that become available after glacial periods as parthenogenetic reproduction is beneficial over mating when the favorable season is very short. The only obligatory parthenogenetic species of the largest bush-cricket subfamily Phaneropterinae is Poecilimon intermedius. It belongs to the Anatolio-Balkan lineage Poecilimon ampliatus species group and in contrast has a remarkably broad distribution from Central Europe to China, following the pattern of geographical parthenogenesis. In this study we provide a systematic revision of the P. ampliatus group based on mitochondrial (ND2) and nuclear (ITS) phylogeny. We estimate divergence times by applying secondary calibration on the ND2 tree to test for congruence between recent splits in the group and the Pleistocene climatic oscillations. We use ecological niche modelling to analyze the ecological requirements of the parthenogenetic P. intermedius and its sexually reproducing sister species P. ampliatus. By projecting on the conditions during the Last Glacial Maximum we outline the suitable areas for both species during the glacial cycles and discuss range shifts in response to climate change. Based on all results we hypothesize that the drought-tolerant P. intermedius originated during the recent glaciations in the southwestern part of its current range and rapidly radiated in a northeastern direction. Its sister species P. ampliatus, which is adapted to higher levels of precipitation, remained in the western Balkans, where populations retreated to higher altitudes during warming.

scholarly journals Little hope for the polyploid endemic Pyrenean Larkspur (Delphinium montanum): evidences from population genomics and Ecological Niche Modelling

2021 ◽  
Author(s):  
Pascaline Salvado ◽  
Pere Aymerich Boixader ◽  
Josep Parera ◽  
Albert Vila Bonfill ◽  
Maria Martin ◽  
...  
Keyword(s):  
Population Structure ◽  
Ecological Niche ◽  
Population Genomics ◽  
Diploid Species ◽  
Ecological Niche Modelling ◽  
High Mountain ◽  
Suitable Habitat ◽  
Sky Islands ◽  
Niche Modelling ◽  
Ecological Requirements

Species endemic to restricted geographical ranges represent a particular conservation issue, be it for their heritage interest. In a context of global change, this is particularly the case for plants which belong to high-mountain ecosystems and, because of their ecological requirements, are doomed to survive or disappear on their "sky islands". The Pyrenean Larkspur (Delphinium montanum, Ranunculaceae) is endemic to the Eastern part of the Pyrenees (France and Spain). It is now only observable at a dozen of localities and some populations show signs of decline, such as a recurrent lack of flowering. Implementing population genomic approach (e.g. RAD-seq like) is particularly useful to understand genomic patterns of diversity and differentiation in order to provide recommendations in term of conservation. However, it remains challenging for species such as D. montanum that are autotetraploid with a large genome size (1C-value > 10 pg) as most methods currently available were developed for diploid species. A Bayesian framework able to call genotypes with uncertainty allowed us to assess genetic diversity and population structure in this system. Our results show evidence for inbreeding (mean GIS = 0.361) within all the populations and substantial population structure (mean GST = 0.403) at the metapopulation level. In addition to a lack of connectivity between populations, spatial projections of Ecological Niche Modelling analyses under different climatic scenarios predict a dramatic decrease of suitable habitat for D. montanum in the future. Based on these results, we discuss the relevance and feasibility of different conservation measures.

scholarly journals Phylogeography of the widespread white-eared hummingbird (Hylocharis leucotis): pre-glacial expansion and genetic differentiation of populations separated by the Isthmus of Tehuantepec

2020 ◽  
Vol 130 (2) ◽  
pp. 247-267
Author(s):  
Luz E Zamudio-Beltrán ◽  
Yuyini Licona-Vera ◽  
Blanca E Hernández-Baños ◽  
John Klicka ◽  
Juan Francisco Ornelas
Keyword(s):  
Genetic Differentiation ◽  
Haplotype Network ◽  
Suitable Habitat ◽  
Glacial Cycles ◽  
Niche Modelling ◽  
Climatic Fluctuations ◽  
History Of ◽  
Genetic Differentiation Of Populations ◽  
Isthmus Of Tehuantepec ◽  
Glacial Expansion

Abstract The Pleistocene glacial cycles had a strong influence on the demography and genetic structure of many species, particularly on northern-latitude taxa. Here we studied the phylogeography of the white-eared hummingbird (Hylocharis leucotis), a widely distributed species of the highlands of Mexico and Central America. Analysis of mitochondrial DNA (mtDNA) sequences was combined with ecological niche modelling (ENM) to infer the demographic and population differentiation scenarios under present and past conditions. Analyses of 108 samples from 11 geographic locations revealed population structure and genetic differentiation among populations separated by the Isthmus of Tehuantepec (IT) and the Motagua-Polochic-Jocotán (MPJ) fault barriers. ENM predicted a widespread distribution of suitable habitat for H. leucotis since the Last Inter Glacial (LIG), but this habitat noticeably contracted and fragmented at the IT. Models for historical dispersal corridors based on population genetics data and ENM revealed the existence of corridors among populations west of the IT; however, the connectivity of populations across the IT has changed little since the LIG. The shallow geographic structure on either side of the isthmus and a star-like haplotype network, combined with the long-term persistence of populations across time based on genetic data and potential dispersal routes, support a scenario of divergence with migration and subsequent isolation and differentiation in Chiapas and south of the MPJ fault. Our findings corroborate the profound effects of Pleistocene climatic fluctuations on the evolutionary history of montane taxa but challenge the generality of expanded suitable habitat (pine-oak forests) during glacial cycles.

Nomenclatural and type catalogue of Athoracophoridae (Mollusca: Eupulmonata: Succineoidea): a synopsis of the first 185 years of biodiscovery in the South West Pacific region

Zootaxa ◽  
2018 ◽  
Vol 4434 (2) ◽  
pp. 201
Author(s):  
GARY M. BARKER
Keyword(s):  
New Caledonia ◽  
Species Group ◽  
The South ◽  
Systematic Revision ◽  
West Pacific ◽  
South West ◽  
Systematic Effort ◽  
The Family ◽  
Biogeographic Region ◽  
Faunal Element

Athoracophoridae are succineoidean terrestrial slugs that constitute a distinctive faunal element of the South West Pacific biogeographic region, with representatives in New Guinea, Australia, New Caledonia, Vanuatu and New Zealand. Despite many studies on morphology, taxonomy and phylogenetic relationships since the first species description in 1832, the understanding of the diversity within the family, as reported in published literature, remains poor with regional disparities in collection and systematic effort, in taxonomic concepts, and in adherence to type concepts. The systematics of Athoracophoridae needs to be re-evaluated through a modern, phylogenetic approach to properly document infra-familial evolution and taxon diversity, advance understanding of evolutionary relationships with other Eupulmonata, and to delineate evolutionary units for conservation prioritization. A catalogue of all class-, family-, genus- and species-group names erected for or used to include Athoracophoridae over the 185 year period 1832 to 2017 is provided, as a first step towards a systematic revision. The following nomenclatural changes are made: lectotype designation for Aneitea macdonaldii Gray, 1860; lectotype designation for Janella papillata Hutton, 1879; type species designation for Amphikonophora Suter, 1897; and lectotype designation for Athoracophorus verrucosus Simroth, 1889. 

scholarly journals Environmental niche modelling as tool for pest risk assessment

2021 ◽  
Vol 104 (1) ◽  
pp. 40-52
Author(s):  
A. N. Afonin* ◽  
Yu. Yu. Kulakova ◽  
Yu. A. Fedorova
Keyword(s):  
Risk Assessment ◽  
Russian Federation ◽  
Ecological Niche Modeling ◽  
Environmental Niche ◽  
Niche Modelling ◽  
Ecological Requirements ◽  
Pest Risk Assessment ◽  
Quarantine Species ◽  
The Russian Federation ◽  
Pest Risk

The article reviews the concept and technology of pest risk assessment for the spread of quarantine species based on ecological and geographical analysis and ecological niche modeling. Using a quarantine species Ipomoea hederacea (L.) Jacq. as an example, we calculated the ecological requirements of the species. The main ecological factors limiting the spread of I. hederacea were determined and the ecological amplitudes of the species in relation to each factor limiting its distribution were quantitatively estimated. We identified ecologically suitable habitats and compiled a map of the ecological-geographical niche of the species using specially created environmental maps based on the obtained data of the ecological limits of the species. Using the map of the ecological-geographical niche, the I. hederacea distribution risk in the regions of the Russian Federation was estimated. Similar maps can be used for basis of quantitative as well as targeted risk assessment of penetration and establishment of harmful organisms. Obtained information will be useful to compile lists of quarantine species, estimate the potential areas of geographic distribution of pests into Russian Federation, and make decisions for introduction of effective phytosanitary measures to prevent the penetration of these invasive organisms. It can also be used as the basis for organizing and conducting phytosanitary monitoring in the Russian Federation.

scholarly journals Systematic revision of the Neotropical catfish genus Scleronema (Siluriformes: Trichomycteridae), with descriptions of six new species from Pampa grasslands

2020 ◽  
Vol 18 (2) ◽  
Author(s):  
Juliano Ferrer ◽  
Luiz R. Malabarba
Keyword(s):  
New Species ◽  
Skin Flap ◽  
Dorsal Surface ◽  
Distribution Patterns ◽  
Species Group ◽  
Type Specimens ◽  
Systematic Revision ◽  
Geographically Distributed ◽  
Atlantic Coastal ◽  
Northeastern Argentina

ABSTRACT The Neotropical genus Scleronema is revised based on the re-examination of the type specimens and 1,713 newly collected specimens. Scleronema is diagnosed from other trichomycterids by the following unambiguous derived characters: fleshy flap at the base of the maxillary barbell; skin flap in the posterior margin of the opercle; articulation between the autopalatine and the vomer ventrally located, with the medial margins of the autopalatines very close to each other; and autopalatine with an interrupted or not interrupted ossified arch-shaped process on its dorsal surface forming a canal. Scleronema minutum and S. operculatum are redescribed, S. angustirostre is considered a junior synonym of S. minutum, and six new species are described. A lectotype is designated for Trichomycterus minutus. The type localities of S. angustirostre, S. minutum, and S. operculatum are reviewed in order to correct erroneous information cited in articles and catalogs subsequent to the original descriptions. Species of Scleronema are geographically distributed in the La Plata basin and Atlantic coastal drainages from Southern Brazil, Southern Paraguay, Northeastern Argentina and Uruguay. They inhabit rivers or streams with sand- or gravel-bottoms across the Pampa grasslands. We provide evidences to recognize two putative monophyletic units within the genus, namely the S. minutum species group and the S. operculatum species group, and discuss the distribution patterns of their species.

scholarly journals Systematic revision of the genus Peronia Fleming, 1822 (Gastropoda, Euthyneura, Pulmonata, Onchidiidae)

ZooKeys ◽  
2020 ◽  
Vol 972 ◽  
pp. 1-224
Author(s):  
Benoît Dayrat ◽  
Tricia C. Goulding ◽  
Deepak Apte ◽  
Sadar Aslam ◽  
Adam Bourke ◽  
...  
Keyword(s):  
Comparative Anatomy ◽  
Species Group ◽  
Museum Collections ◽  
Large Collection ◽  
Systematic Revision ◽  
West Pacific ◽  
Mitochondrial Coi ◽  
Fresh Material ◽  
Nomina Dubia ◽  
First Time

The genus Peronia Fleming, 1822 includes all the onchidiid slugs with dorsal gills. Its taxonomy is revised for the first time based on a large collection of fresh material from the entire Indo-West Pacific, from South Africa to Hawaii. Nine species are supported by mitochondrial (COI and 16S) and nuclear (ITS2 and 28S) sequences as well as comparative anatomy. All types available were examined and the nomenclatural status of each existing name in the genus is addressed. Of 31 Peronia species-group names available, 27 are regarded as invalid (twenty-one synonyms, sixteen of which are new, five nomina dubia, and one homonym), and four as valid: Peronia peronii (Cuvier, 1804), Peronia verruculata (Cuvier, 1830), Peronia platei (Hoffmann, 1928), and Peronia madagascariensis (Labbé, 1934a). Five new species names are created: P. griffithsi Dayrat & Goulding, sp. nov., P. okinawensis Dayrat & Goulding, sp. nov., P. setoensis Dayrat & Goulding, sp. nov., P. sydneyensis Dayrat & Goulding, sp. nov., and P. willani Dayrat & Goulding, sp. nov.Peronia species are cryptic externally but can be distinguished using internal characters, with the exception of P. platei and P. setoensis. The anatomy of most species is described in detail here for the first time. All the secondary literature is commented on and historical specimens from museum collections were also examined to better establish species distributions. The genus Peronia includes two species that are widespread across the Indo-West Pacific (P. verruculata and P. peronii) as well as endemic species: P. okinawensis and P. setoensis are endemic to Japan, and P. willani is endemic to Northern Territory, Australia. Many new geographical records are provided, as well as a key to the species using morphological traits.

scholarly journals Bosminopsis deitersi (Crustacea: Cladocera) as an ancient species group: a revision

PeerJ ◽  
2021 ◽  
Vol 9 ◽  
pp. e11310
Author(s):  
Petr G. Garibian ◽  
Dmitry P. Karabanov ◽  
Anna N. Neretina ◽  
Derek J. Taylor ◽  
Alexey A. Kotov
Keyword(s):  
Morphological Evolution ◽  
Single Species ◽  
Species Group ◽  
Freshwater Ecology ◽  
Genetic Approach ◽  
Species Problem ◽  
Ecological Requirements ◽  
Morphological Stasis ◽  
The Family ◽  
Group A

Water fleas (Crustacea: Cladocera) of the Family Bosminidae have been studied since the founding of paleolimnology and freshwater ecology. However, one species, Bosminopsis deitersi, stands out for its exceptional multicontinental range and broad ecological requirements. Here we use an integrated morphological and multilocus genetic approach to address the species problem in B. deitersi. We analyzed 32 populations of B. deitersi s. lat. Two nuclear and two mitochondrial loci were used to carry out the bGMYC, mPTP and STACEY algorithms for species delimitation. Detailed morphological study was also carried out across continents. The evidence indicated a widely distributed cryptic species in the Old World (Bosminopsis zernowi) that is genetically divergent from B. deitersi s.str. We revised the taxonomy and redescribed the species in this complex. Our sampling indicated that B. zernowi had weak genetic differentiation across its range. A molecular clock and biogeographic analysis with fossil calibrations suggested a Mesozoic origin for the Bosminopsis deitersi group. Our evidence rejects the single species hypothesis for B. deitersi and is consistent with an ancient species group (potentially Mesozoic) that shows marked morphological conservation. The family Bosminidae, then, has examples of both rapid morphological evolution (Holocene Bosmina), and morphological stasis (Bosminopsis).

scholarly journals Systematic revision of the Plectopylinae (Gastropoda, Pulmonata, Plectopylidae)

2018 ◽  
Author(s):  
Barna Páll-Gergely
Keyword(s):  
Natural History ◽  
Species Group ◽  
Type Material ◽  
Valid Species ◽  
Systematic Revision ◽  
The Family

The family Plectopylidae is divided into two subfamilies: Sinicolinae subfam. nov. (included extant genera: Gudeodiscus Páll-Gergely, 2013, Endothyrella Zilch, 1959, Halongella Páll-Gergely, 2015, Sicradiscus Páll-Gergely, 2013, Sinicola Gude, 1899) and Plectopylinae Möllendorff, 1898 (included genera: Chersaecia Gude, 1899, Hunyadiscus Páll-Gergely, 2016, Naggsia Páll-Gergely & Muratov, 2016, Plectopylis Benson, 1860). The Eocene fossil Plectopyloides Yen, 1969 is classified into the Sinicolinae. The Plectopylinae are revised mainly based on historical type and non-type material, and the material of the Florida Museum of Natural History, collected in Thailand in the 1980s. The following species-group taxa are described as new: Chersaecia auffenbergi sp. nov., Chersaecia densegyrata sp. nov., Chersaecia mogokensis sp. nov., Chersaecia reversalis sp. nov., Chersaecia scabra sp. nov., Chersaecia shiroiensis subnagaensis subsp. nov., Hunyadiscus tigrina sp. nov., Naggsia oligogyra sp. nov., Plectopylis crassilabris sp. nov., Plectopylis malayana sp. nov. and Plectopylis thompsoni sp. nov. The genus Endoplon Gude, 1899 is treated as a synonym of Chersaecia. Consequently, the two species classified in Endoplon are members of Chersaecia: Chersaecia brachyplecta (Benson, 1863) comb. nov. and Chersaecia smithiana (Gude, 1897) comb. nov. The genus Plectopylis is redefined, and includes only species with fused anterior and posterior lamellae. Thus, the following species are moved from Plectopylis to Chersaecia: Chersaecia feddeni (Blanford, 1865) comb. nov., Chersaecia goniobathmos (Ehrmann, 1922) comb. nov., Chersaecia leucochila (Gude, 1897) comb. nov., Chersaecia magna (Gude, 1897) comb. nov. and Chersaecia woodthorpei (Gude, 1899) comb. nov. Altogether thirteen species and varieties are moved to the synonymy of valid species: Helix (Plectopylis) brachydiscus Godwin-Austen, 1879 syn. nov., Helix (Plectopylis) ponsonbyi Godwin-Austen, 1888 syn. nov., Plectopylis (Chersaecia) kengtungensis Gude, 1914 syn. nov., Plectopylis (Chersaecia) degerbolae Solem, 1966 syn. nov., Plectopylis lissochlamys Gude, 1897 syn. nov., Helix repercussa Gould, 1856 syn. nov., Plectopylis achatina var. obesa Gude, 1898 syn. nov., Plectopylis achatina var. infrafasciata Gude, 1898 syn. nov., Plectopylis achatina var. venusta Gude, 1898 syn. nov., Plectopylis achatina var. castanea Gude, 1898 syn. nov., Plectopylis achatina var. breviplica Gude, 1898 syn. nov., Plectopylis achatina var. repercussoides Gude, 1899 syn. nov., Plectopylis linterae var. fusca Gude, 1898 syn. nov. Plectopylis (Chersaecia) simplex Solem, 1966 is a subspecies of Chersaecia perarcta (Blanford, 1865), whereas Plectopylis muspratti Gude, 1897 is a subspecies of Chersaecia nagaensis (Godwin-Austen, 1875).

scholarly journals Evolution of Poecilimon jonicus group (Orthoptera: Tettigoniidae): a history linked to the Aegean Neogene paleogeography

2020 ◽  
Vol 20 (4) ◽  
pp. 803-819
Author(s):  
Simeon B. Borissov ◽  
Aneliya Bobeva ◽  
Battal Çıplak ◽  
Dragan Chobanov
Keyword(s):  
Phylogenetic Relationships ◽  
Relative Rate ◽  
Species Group ◽  
Disjunct Distribution ◽  
12S Rrna ◽  
Western Balkans ◽  
Aegean Area ◽  
Tectonic Events ◽  
Nuclear Fragment ◽  
Ribosomal Cistron

AbstractThe Aegean archipelago is among the largest on Earth with astonishing biodiversity within Europe. Its territory underwent a massive geotectonic transformation in Neogene that resulted in multitude of changes in land-sea configuration and disintegrated the formerly united Aegean land to a complicated mainland-archipelago system. Therefore, it represents an excellent laboratory for studying evolution of terrestrial fauna. In the present study, we use a model group of flightless bush crickets with annual reproduction cycle—Poecilimon jonicus species group—to trace correlation of lineage diversification with the known paleogeographic events in the Aegean area. The group belongs to the hyperdiverse genus Poecilimon and has a disjunct distribution along the Hellenic arc from southwestern Anatolia through Crete to the western Balkans and the Apennines. To test our hypothesis, we inferred phylogenetic relationships of the P. jonicus group sensu lato using a nuclear fragment covering two spacers of the ribosomal cistron (ITS1 + ITS2). To study intra-group phylogeny, we compared mitochondrial phylogenies based on two matrices—(1) a concatenated ND2 and COI dataset of 1656 bp and (2) a 16S rRNA + 12S rRNA dataset of 1835 bp. As a second step, we estimated divergence times applying Bayesian approach with BEAST and a relative rate framework with RelTime on the mitochondrial matrices. We compare trees calibrated based on evolutionary rates and tectonic events and discuss radiation scenarios in concordance with known paleogeographic events in the Aegean area. Our results revealed robust phylogeny of the Poecilimon jonicus group and confirmed a strong link between its evolution and the Aegean paleogeography. The phylogenetic relationships of the group supported reconsideration of its systematics.

Contrasting Altitude and Long-term Geographical Isolation Shaped Phylogeography of Himalrandia  lichiangensis, an Endemic Species from the Dry Hot Valley of Southwest China

2020 ◽  
Author(s):  
Yaomei Qiao ◽  
Jian Liu ◽  
Xun Gong
Keyword(s):  
Genetic Differentiation ◽  
Southwest China ◽  
Distribution Area ◽  
Geographical Isolation ◽  
Niche Modelling ◽  
Jinsha River ◽  
Climatic Oscillations ◽  
Late Tertiary ◽  
High Degree

Abstract Background: The eastern Sino-Himalayan region of southwest China, as one of the world’s biodiversity hotspots, has undergone dramatic geomorphological and climatic changes during the Late Tertiary/Quaternary. The dry-hot valleys in southwest China is overlapping with the Hengduan Mountains. However, when this endemism was assembled in dry-hot valleys and how the climatic oscillations and/or tectonic movements influence their phylogeographical patterns remained largely unknown. Himalrandia lichiangensis is a shrub of Rubiaceae, endemically distributes in dry-hot valleys of southwest China. By integrating evidences from phylogeography, population dynamic and ecological niche modelling, we are aiming to trace the evolutionary history and explain the origin of biodiversity and endemism in the dry-hot valleys of southwest China. Results: Based on sequencing four chloroplastic non-coding regions (psbM-trnD, trnD-trnT, atpB-rbcL and accD-psaI) and two single-low copy nuclear genes CAMX (Calmodulin) and ITS of 423 individuals from 23 populations, we found high genetic variation mainly existed between the populations (cpDNA: 89.80％, ITS: 84.55％, CAMX: 95.68％). Haplotypes in different river basins showed significant phylogeographical structure. The geographical distribution of haplotypes indicated that there is a high degree of genetic differentiation and this differentiation is associated with altitude discrepancy. BARRIER analysis detects a strong geographic barrier between the Nanpan River and Jinsha River. The MaxEnt result shows that the suitable distribution area was the largest in the LGM. The future climate warming will lead to the niche expansion for H. lichiangensis but will also cause fragmented distribution.Conclusions: Our study highlighted the importance of altitude in explaining the genetic differentiation. The current phylogeographical pattern of H. lichiangensis may be shaped by long-term geographical isolation resulted from the uplifting of Himalaya, which gives rise to the barriers from the Hengduan Mountain or multiple river systems, and the vertical altitude discrepancies that both limited gene flow among regions. The Middle Jinsha River valley is most likely to be a main refuge for H. lichiangensis till now, and the glaciation retreat may account for the high endemism of plants in the dry-hot valleys of southwest China.

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