scholarly journals PHYLOGENETIC ANALYSIS OF SHEEP POX AND GOAT POX VIRUS STRAINS IN SAUDI ARABIA

2020 ◽  
Vol 30 (3) ◽  
Keyword(s):  
Phylogenetic Analysis ◽  
Saudi Arabia ◽  
Virus Strains ◽  
Goat Pox Virus

scholarly journals Phylogenetic Analysis of MERS-CoV in a Camel Abattoir, Saudi Arabia, 2016–2018

2020 ◽  
Vol 26 (12) ◽  
pp. 3089-3091
Author(s):  
Maged Gomaa Hemida ◽  
Daniel K.W. Chu ◽  
Yen Y. Chor ◽  
Samuel M.S. Cheng ◽  
Leo L.M. Poon ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Saudi Arabia

Phylogenetic analysis of rubella virus strains during an outbreak in São Paulo, 2007-2008

2012 ◽  
Vol 84 (10) ◽  
pp. 1666-1671 ◽  
Author(s):  
C.A. Figueiredo ◽  
M.I. Oliveira ◽  
S.P. Curti ◽  
A.M.S. Afonso ◽  
A.L. Frugi Yu ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Rubella Virus ◽  
Sao Paulo ◽  
São Paulo ◽  
Virus Strains

scholarly journals Implementation of a National Measles Elimination Program in Iran: Phylogenetic Analysis of Measles Virus Strains Isolated during 2010–2012 Outbreaks

PLoS ONE ◽  
2014 ◽  
Vol 9 (4) ◽  
pp. e94846 ◽  
Author(s):  
Vahid Salimi ◽  
Simin Abbasi ◽  
Seyed Mohsen Zahraei ◽  
Ghazal Fatemi-Nasab ◽  
Fatemeh Adjaminezhad-Fard ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Measles Virus ◽  
Measles Elimination ◽  
Virus Strains

scholarly journals Phylogenetic Analysis of Rubella Virus Strains from an Outbreak in Madrid, Spain, from 2004 to 2005

2008 ◽  
Vol 47 (1) ◽  
pp. 158-163 ◽  
Author(s):  
A. O. Martinez-Torres ◽  
M. M. Mosquera ◽  
J. C. Sanz ◽  
B. Ramos ◽  
J. E. Echevarria
Keyword(s):  
Phylogenetic Analysis ◽  
Rubella Virus ◽  
Virus Strains

Phylogenetic analysis of feline immunodeficiency virus strains from naturally infected cats in Belgium and The Netherlands

2015 ◽  
Vol 196 ◽  
pp. 30-36 ◽  
Author(s):  
Inge D.M. Roukaerts ◽  
Sebastiaan Theuns ◽  
Elien R.L. Taffin ◽  
Sylvie Daminet ◽  
Hans J. Nauwynck
Keyword(s):  
Phylogenetic Analysis ◽  
The Netherlands ◽  
Feline Immunodeficiency Virus ◽  
Immunodeficiency Virus ◽  
Virus Strains

scholarly journals Molecular Epidemiology of Rabies in Wild Canidae in Tunisia

Viruses ◽  
2021 ◽  
Vol 13 (12) ◽  
pp. 2473
Author(s):  
Zied Bouslama ◽  
Habib Kharmachi ◽  
Nourhene Basdouri ◽  
Jihen Ben Salem ◽  
Samia Ben Maiez ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Phylogenetic Analysis ◽  
Wild Animals ◽  
Genetic Characteristics ◽  
Bayesian Phylogenetic Analysis ◽  
Viral Sequencing ◽  
Virus Isolates ◽  
Virus Strains ◽  
Natural Barrier

Rabies is a viral zoonosis that is transmissible to humans via domestic and wild animals. There are two epidemiological cycles for rabies, the urban and the sylvatic cycles. In an attempt to study the epidemiological role of wild canidae in rabies transmission, the present study aimed to analyze the genetic characteristics of virus isolates and confirm prior suggestions that rabies is maintained through a dog reservoir in Tunisia. Virus strains isolated from wild canidae were subject to viral sequencing, and Bayesian phylogenetic analysis was performed using Beast2 software. Essentially, the virus strains isolated from wild canidae belonged to the Africa-1 clade, which clearly diverges from fox-related strains. Our study also demonstrated that genetic characteristics of the virus isolates were not as distinct as could be expected if a wild reservoir had already existed. On the contrary, the geographic landscape is responsible for the genetic diversity of the virus. The landscape itself could have also acted as a natural barrier to the spread of the virus.

scholarly journals Phylogenetic Analysis of European Brown Hare Syndrome Virus Strains from Poland (1992–2004)

Viruses ◽  
2021 ◽  
Vol 13 (10) ◽  
pp. 1999
Author(s):  
Andrzej Fitzner ◽  
Ewa Kwit ◽  
Wiesław Niedbalski ◽  
Ewelina Bigoraj ◽  
Andrzej Kęsy ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Amino Acid ◽  
Amino Acid Sequence ◽  
Single Amino Acid ◽  
Brown Hare ◽  
European Brown Hare ◽  
Genetic Groups ◽  
Vp60 Gene ◽  
European Brown Hare Syndrome ◽  
Virus Strains

European brown hare syndrome (EBHS) is lethal to several species of free-living hares worldwide. The genetic characterization of its virus (EBHSV) strains in European circulation and epidemiological knowledge of EBHSV infections is not yet complete. The study determined the nucleotide sequences of the genomes of EBHSV strains from Poland and analyzed their genetic and phylogenetic relationships to a group of hare lagoviruses. The genome of five virus strains detected in Poland between 1992 and 2004 was obtained by RT-PCR and sequencing of the obtained amplicons. The genetic relationships of the EBHSV strains were analyzed using the full genome and VP60 gene sequences. Additionally, the amino acid sequence of the VP60 gene was analyzed to identify mutations specific to recognized EBHSV subgroups. Partial amplification of the virus open reading frame (ORF)1 and ORF2 regions obtained nearly complete nucleotide genome sequences of the EBHSV strains. Phylogenetic analysis placed them in a GII.1 cluster with other European strains related to nonpathogenic hare caliciviruses. VP60 gene analysis allocated these EBHSV strains to the G1.2, G2.2–2.3 or G3 virus genetic groups. The amino acid sequence differences in the entire genome ranged from 1.1 to 2.6%. Compared to a reference French EBHSV-GD strain, 22 variable amino acid sites were identified in the VP60 region of the Polish strains, but only six were in VP10. Single amino acid changes appeared in different sequence positions among Polish and other European virus strains from different genetic groups, as well as in VP10 sequences of nonpathogenic hare caliciviruses. The results of the study showed a high genetic homogeneity of EBHSV strains from Poland despite their different location occurrence and initial detection times. These strains are also phylogenetically closely related to other EBHSV strains circulating in Europe, likely confirming the slow evolutionary dynamics of this lagovirus species.

scholarly journals The emergence of SARS-CoV-2 by an unusual genome reconstitution

2020 ◽  
Author(s):  
Seong-Tshool Hong ◽  
Md. Mehedi Hassan ◽  
Shirina Sharmin ◽  
Jinny Hong ◽  
Hoi-Seon Lee ◽  
...  
Keyword(s):  
Amino Acids ◽  
Phylogenetic Analysis ◽  
Pairwise Comparison ◽  
Surface Protein ◽  
Plasmodium Malariae ◽  
Spike Protein ◽  
Genome Sequences ◽  
The World ◽  
The Common ◽  
Virus Strains

Abstract SARS-CoV-2 has been spreading remarkedly fast around the world since its emergence while the origin of the virus remains ambiguous. Here, we constructed all of the original prototype genome sequences of SARS-CoV-2 by selecting the common nucleotide among the different virus strains with species. Phylogenetic analysis on the prototype sequences showed that SARS-CoV-2 was a direct descendant of Bat-CoV and was closely related to Pan-CoV, Bat-SL-CoV, and SARS-CoV. The pairwise comparison of SARS-CoV-2 with Bat-CoV showed an unusual replacement of the motif consisting of 7 amino acids within the spike protein of SARS-CoV-2. Database searches showed that the motif originated from a surface protein of Plasmodium malariae, suggesting that the SARS-CoV-2 was emerged after acquiring the motif of the malaria surface protein.

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