scholarly journals Transcriptional and Small RNA Responses of the White Mold Fungus Sclerotinia sclerotiorum to Infection by a Virulence-Attenuating Hypovirus

Viruses ◽  
2018 ◽  
Vol 10 (12) ◽  
pp. 713 ◽  
Author(s):  
Shin-Yi Lee Marzano ◽  
Achal Neupane ◽  
Leslie Domier

Mycoviruses belonging to the family Hypoviridae cause persistent infection of many different host fungi. We previously determined that the white mold fungus, Sclerotinia sclerotiorum, infected with Sclerotinia sclerotiorum hypovirus 2-L (SsHV2-L) exhibits reduced virulence, delayed/reduced sclerotial formation, and enhanced production of aerial mycelia. To gain better insight into the cellular basis for these changes, we characterized changes in mRNA and small RNA (sRNA) accumulation in S. sclerotiorum to infection by SsHV2-L. A total of 958 mRNAs and 835 sRNA-producing loci were altered after infection by SsHV2-L, among which >100 mRNAs were predicted to encode proteins involved in the metabolism and trafficking of carbohydrates and lipids. Both S. sclerotiorum endogenous and virus-derived sRNAs were predominantly 22 nt in length suggesting one dicer-like enzyme cleaves both. Novel classes of endogenous small RNAs were predicted, including phasiRNAs and tRNA-derived small RNAs. Moreover, S. sclerotiorum phasiRNAs, which were derived from noncoding RNAs and have the potential to regulate mRNA abundance in trans, showed differential accumulation due to virus infection. tRNA fragments did not accumulate differentially after hypovirus infection. Hence, in-depth analysis showed that infection of S. sclerotiorum by a hypovirulence-inducing hypovirus produced selective, large-scale reprogramming of mRNA and sRNA production.

Author(s):  
Gerarda Beatriz Pinto da Silva ◽  
Leise Inês Heckler ◽  
Miria Durigon ◽  
Ricardo Feliciano dos Santos ◽  
Maike Lovato ◽  
...  

Widely consumed by the Brazilian, lettuce has a cultivated area of 35,000 ha. Among the diseases that might infect this crop, white mold causes major concerns for producers. Mold is caused by the fungus Sclerotinia sclerotiorum (Lib.) de Bar. It can lead to losses of up to 100% in lettuce. The objectives of this study were assessment of antagonistic effect of Trichoderma spp. isolates, grown and prepared on rice grain, on white mold of lettuce (S. sclerotiorum). The assay was conducted using 12 Trichoderma spp. isolates, four of which came from at least a year of storage at 4ºC, four from areas with a history of the disease and four from areas without a history of the disease. Both fungi were grown on wet rice grains and only Trichoderma strains was dried and ground to be used in the next assay. The experiment was completely randomized in a factorial 12x2 design (Trichoderma spp. × substrate inoculated or not with S. sclerotiorum) and control plants without any of the fungi. The percentage of survived plants was analyzed using AUDPC, number of leaves, stem diameter, length of root system, fresh and dry weight of shoot and root, and total dry matter. The results showed that all Trichoderma spp. were capable of lettuce growth promotion in the presence and absence of S. sclerotiorum. The isolates that showed the best biocontrol of S. sclerotiorum were TC1.15 and WM-13. To promote growth, the best isolates were UFSMT15.1 and WM-13, suggesting that the latter presents desirable characteristics for biocontrol, including excellent feasibility for large-scale production, good antagonistic activity to S. sclerotiorum and the ability to stimulate growth promotion in lettuce.


2015 ◽  
Vol 43 (13) ◽  
pp. 6191-6206 ◽  
Author(s):  
Eric Roberto Guimarães Rocha Aguiar ◽  
Roenick Proveti Olmo ◽  
Simona Paro ◽  
Flavia Viana Ferreira ◽  
Isaque João da Silva de Faria ◽  
...  

Abstract Virus surveillance in vector insects is potentially of great benefit to public health. Large-scale sequencing of small and long RNAs has previously been used to detect viruses, but without any formal comparison of different strategies. Furthermore, the identification of viral sequences largely depends on similarity searches against reference databases. Here, we developed a sequence-independent strategy based on virus-derived small RNAs produced by the host response, such as the RNA interference pathway. In insects, we compared sequences of small and long RNAs, demonstrating that viral sequences are enriched in the small RNA fraction. We also noted that the small RNA size profile is a unique signature for each virus and can be used to identify novel viral sequences without known relatives in reference databases. Using this strategy, we characterized six novel viruses in the viromes of laboratory fruit flies and wild populations of two insect vectors: mosquitoes and sandflies. We also show that the small RNA profile could be used to infer viral tropism for ovaries among other aspects of virus biology. Additionally, our results suggest that virus detection utilizing small RNAs can also be applied to vertebrates, although not as efficiently as to plants and insects.


Plant Disease ◽  
2021 ◽  
Author(s):  
Kitti Csüllög ◽  
Brigitta Tóth ◽  
Éva Judit Lelesz ◽  
Milán Fehér ◽  
Csaba István Virág ◽  
...  

Watercress (Nasturtium officinale) is an aquatic dicotyledonous vegetable belonging to Brassicaceae (Aiton 1812). Watercress was grown in an aquaponic system on fired clay ball medium at the Aquaponic Research Station of the University of Debrecen, in the city of Debrecen (Hungary). During January 2020, 3-month-old plants showed symptoms in aquaponic cultivation. A visual survey showed 30% of plants with symptoms. Leaves and stems withered and showed white cotton-like mycelium. Mycelia from infected plants were placed on potato dextrose agar (PDA) and incubated at 25°C for seven days. Single hyphal tips were transferred to produce a pure culture. All ten fungal isolates showed similar morphological characteristics on PDA. Colonies consisted of white mycelia after three days and globoid to irregular and black 2.5 to 7 (average, 3) mm (n = 100 from ten plates) sclerotia formed ten days later, which are the typical morphological features of Sclerotinia sclerotiorum (Mordue et al. 1976). Molecular identification was performed with one of the ten isolates (Scl_B). Mycelia were grown in 250 ml of potato dextrose broth in a rotary shaker at 175 rpm at 24°C for six days. DNA was extracted from mycelium using a Nucleospin plant II (Macherey-Nagel, Germany) according to the manufacturer’s protocol. PCR amplification (Kim et al. 2014) was performed with primers ITS1/ITS4 for the internal transcribed spacer region (White et al. 1990) on a Primus 96 thermal cycler (MWG Biotech, Germany). Specific polymerase chain reaction was performed with primers SSasprF/SSasprR (Abd-Elmagid et al. 2013). PCR products were sequenced by Microsynth Austria GmbH. NCBI BLAST analysis of the 440-bp ITS sequence (Genbank MW012403.1) showed 100% identity with the sequence of S. sclerotiorum (MT177267.1, etc.). The 170-bp specific gene sequence (Genbank MW959042.1) had a 100% similarity to hypothetical proteins (Genbank MK028159.1), with a 99.4% similarity to a portion of the S. sclerotiorum aspartyl protease gene (AF271387.1). Pathogenicity tests were carried out by inoculating surface-disinfested, 30-day-old watercress plants in plastic pots (15x15x12 cm). In three repeated experiments 90 watercress plants were measured. 15 plants (one plant per pot) were planted into the five-times autoclaved substrate (Biorgmix: pH 6.1±0.5%, N:1.5%, P2O5:0.7%, K2O:0.5%, organic matter content:50%) and inoculated by ten wheat kernels that were colonized by S. sclerotiorum (Scl_B) (Garibaldi et al. 2019). 15 plants were planted into the substrate with ten non-inoculated kernels as a control. Plants were kept in an MLR-352 climatic test chamber (PHCbi, Japan) at 21 ± 1°C for 12 hr light:dark cycle. On the first day of the experiment complex nutrient solution (Tek-Land: N:5%, P2O5:5%, K2O:5%, B:0.01%, Cu:0,01%, Mn:0.02%, Mo:0.002%, Zn:0.016%) was used, then autoclaved water daily. Eight days later white mycelium appeared on every inoculated plant and five days later dark sclerotia formed on the stems. Based on the morphological characteristics the re-isolated pathogen was S. sclerotiorum. Similar results were detected in three repeated experiments with white mold fungus being reisolated from all 45 infected watercress plants. The 45 non-inoculated plants did not show any symptoms and any diseases. This pathogen has already been reported on watercress in the field (Farr et al. 1989; Boland and Hall 1994; Garibaldi et al. 2019). This is the first reported case of white mold on watercress in aquaponic system in Hungary.


2019 ◽  
Author(s):  
Chenxin Li ◽  
Hengping Xu ◽  
Fang-Fang Fu ◽  
Scott D. Russell ◽  
Venkatesan Sundaresan ◽  
...  

ABSTRACTGametes constitute a critical stage of the plant life cycle, during which the genome undergoes reprogramming in preparation for embryogenesis. Here we characterized the small RNA transcriptomes of egg cells and sperm cells from rice to elucidate genome-wide distributions of 24nt siRNAs, which are a hallmark of RNA-directed DNA methylation (RdDM) in plants and are typically concentrated at boundaries of heterochromatin. We found that 24nt siRNAs were depleted from heterochromatin boundaries in both gametes, reminiscent of siRNA patterns in DDM1-type nucleosome remodeler mutants. In sperm, 24nt siRNAs were spread across broad heterochromatic regions, while in eggs, 24nt siRNAs were concentrated at a smaller number of heterochromatic loci throughout the genome, which were shared with vegetative tissues and sperm. In both gametes, patterns of CHH methylation, typically a strong indicator of RdDM, were similar to vegetative tissues, although lower in magnitude. These findings indicate that the small RNA transcriptome undergoes large-scale re-programming in both male and female gametes, which is not correlated with recruitment of DNA methyltransferases in gametes and suggestive of unexplored regulatory activities of gamete small RNAs in seeds after fertilization.


1982 ◽  
Vol 62 (1) ◽  
pp. 65-69 ◽  
Author(s):  
J. C. TU ◽  
W. D. BEVERSDORF

Ex Rico 23, a cultivar of white bean (Phaseolus vulgaris L.) introduced into Canada from Columbia, showed tolerance to white mold (Sclerotinia sclerotiorum) in an Ontario White Bean Variety Test at a site having severe white mold infection in 1978. Other entries, including the recommended cultivars, Fleetwood, Kentwood and Seafarer, suffered severe white mold infection and yield loss. The tolerant characteristic of Ex Rico 23 was confirmed experimentally in 1980 in both small-plot and large-scale plantings. In a field with severe white mold infection in Fleetwood, Ex Rico 23 had consistently lower disease incidence and a slower rate of disease spread. The yield loss in 1980 for Ex Rico 23 was minimal, but for Fleetwood was approximately 25 and 50% in a small-plot and a large-scale planting, respectively. The application of benomyl for disease control did not significantly increase the yield of dry beans.


Author(s):  
N. K. Upadhyay ◽  
Ved Ratan ◽  
V. K. Yadav ◽  
Ajay Kumar ◽  
Deepak Awasthi ◽  
...  

Plant Disease ◽  
1998 ◽  
Vol 82 (7) ◽  
pp. 832-832 ◽  
Author(s):  
S. B. Johnson ◽  
M. D. Kleinhenz ◽  
J. D. Dwyer ◽  
T. Griffin ◽  
O. M. Olanya ◽  
...  

White mold or Sclerotinia stem rot (Sclerotinia sclerotiorum (Lib) de-Bary) was first observed on soybean varieties in a variety trial at the Maine Agricultural and Forest Experiment Station, Presque Isle, and in commercial soybean fields in late July and August 1997. Symptoms and signs included stem bleaching, fluffy white mycelial growth on soybean stems and foliage, and presence of sclerotia typical of white mold. Disease assessment, based on symptoms, was conducted on the varieties in the trial in the experiment station. Field observations on disease occurrence were also conducted in commercial soybean fields in northern Maine. In the variety trial experiment, mean incidence (%) of white mold ranged from 0 to 6.8% on Lambert, APK007, P9092, P9132, and Stine varieties. No white mold was detected on P9071, P9007, Korada, Bravor, Ugo, APK020, and Aquillon varieties. Of the infected varieties, incidence of white mold was detected in 10 of 33 fields examined. This is the first report of the occurrence of white mold on soybean in Maine. Because of large-scale commercial potato production in the region, and previous occurrence of white mold on potato, it is likely that the pathogen is present in soils of various commercial potato fields in Maine. Precautions should, therefore, be taken in introducing resistant varieties and ensuring proper rotation and cropping sequences as soybean production increases in Maine.


Viruses ◽  
2018 ◽  
Vol 10 (4) ◽  
pp. 214 ◽  
Author(s):  
Pauline Mochama ◽  
Prajakta Jadhav ◽  
Achal Neupane ◽  
Shin-Yi Lee Marzano

2021 ◽  
pp. 104685
Author(s):  
Natálie Martins Alves ◽  
Rafaela Araújo Guimarães ◽  
Sarah Silva Costa Guimarães ◽  
Amanda Frausino Faria ◽  
Ítalo Augusto Férrer Melo Santos ◽  
...  

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