scholarly journals Enhancing Animal Movement Analyses: Spatiotemporal Matching of Animal Positions with Remotely Sensed Data Using Google Earth Engine and R

2021 ◽  
Vol 13 (20) ◽  
pp. 4154
Author(s):  
Ramiro D. Crego ◽  
Majaliwa M. Masolele ◽  
Grant Connette ◽  
Jared A. Stabach

Movement ecologists have witnessed a rapid increase in the amount of animal position data collected over the past few decades, as well as a concomitant increase in the availability of ecologically relevant remotely sensed data. Many researchers, however, lack the computing resources necessary to incorporate the vast spatiotemporal aspects of datasets available, especially in countries with less economic resources, limiting the scope of ecological inquiry. We developed an R coding workflow that bridges the gap between R and the multi-petabyte catalogue of remotely sensed data available in Google Earth Engine (GEE) to efficiently extract raster pixel values that best match the spatiotemporal aspects (i.e., spatial location and time) of each animal’s GPS position. We tested our approach using movement data freely available on Movebank (movebank.org). In a first case study, we extracted Normalized Difference Vegetation Index information from the MOD13Q1 data product for 12,344 GPS animal locations by matching the closest MODIS image in the time series to each GPS fix. Data extractions were completed in approximately 3 min. In a second case study, we extracted hourly air temperature from the ERA5-Land dataset for 33,074 GPS fixes from 12 different wildebeest (Connochaetes taurinus) in approximately 34 min. We then investigated the relationship between step length (i.e., the net distance between sequential GPS locations) and temperature and found that animals move less as temperature increases. These case studies illustrate the potential to explore novel questions in animal movement research using high-temporal-resolution, remotely sensed data products. The workflow we present is efficient and customizable, with data extractions occurring over relatively short time periods. While computing times to extract remotely sensed data from GEE will vary depending on internet speed, the approach described has the potential to facilitate access to computationally demanding processes for a greater variety of researchers and may lead to increased use of remotely sensed data in the field of movement ecology. We present a step-by-step tutorial on how to use the code and adapt it to other data products that are available in GEE.

Land ◽  
2019 ◽  
Vol 8 (4) ◽  
pp. 58 ◽  
Author(s):  
Nicola Puletti ◽  
Marco Bascietto

Knowing the extent and frequency of forest cuttings over large areas is crucial for forest inventories and monitoring. Remote sensing has amply proved its ability to detect land cover changes, particularly in forested areas. Among various strategies, those focusing on mapping using classification approaches of remotely sensed time series are the most frequently used. The main limit of such approaches stems from the difficulty in perfectly and unambiguously classifying each pixel, especially over wide areas. The same procedure is of course simpler if performed over a single pixel. An automated method for identifying forest cuttings over a predefined network of sampling points (IUTI) using multitemporal Sentinel 2 imagery is described. The method employs normalized difference vegetation index (NDVI) growth trajectories to identify the presence of disturbances caused by forest cuttings using a large set of points (i.e., 1580 “forest” points). We applied the method using a total of 51 S2 images extracted from the Google Earth Engine over two years (2016 and 2017) in an area of about 70 km2 in Tuscany, central Italy.


2012 ◽  
Vol 34 (1) ◽  
pp. 103 ◽  
Author(s):  
Z. M. Hu ◽  
S. G. Li ◽  
J. W. Dong ◽  
J. W. Fan

The spatial annual patterns of aboveground net primary productivity (ANPP) and precipitation-use efficiency (PUE) of the rangelands of the Inner Mongolia Autonomous Region of China, a region in which several projects for ecosystem restoration had been implemented, are described for the years 1998–2007. Remotely sensed normalised difference vegetation index and ANPP data, measured in situ, were integrated to allow the prediction of ANPP and PUE in each 1 km2 of the 12 prefectures of Inner Mongolia. Furthermore, the temporal dynamics of PUE and ANPP residuals, as indicators of ecosystem deterioration and recovery, were investigated for the region and each prefecture. In general, both ANPP and PUE were positively correlated with mean annual precipitation, i.e. ANPP and PUE were higher in wet regions than in arid regions. Both PUE and ANPP residuals indicated that the state of the rangelands of the region were generally improving during the period of 2000–05, but declined by 2007 to that found in 1999. Among the four main grassland-dominated prefectures, the recovery in the state of the grasslands in the Erdos and Chifeng prefectures was highest, and Xilin Gol and Chifeng prefectures was 2 years earlier than Erdos and Hunlu Buir prefectures. The study demonstrated that the use of PUE or ANPP residuals has some limitations and it is proposed that both indices should be used together with relatively long-term datasets in order to maximise the reliability of the assessments.


Sensors ◽  
2021 ◽  
Vol 21 (5) ◽  
pp. 1791
Author(s):  
Carmen Fattore ◽  
Nicodemo Abate ◽  
Farid Faridani ◽  
Nicola Masini ◽  
Rosa Lasaponara

In recent years, the impact of Climate change, anthropogenic and natural hazards (such as earthquakes, landslides, floods, tsunamis, fires) has dramatically increased and adversely affected modern and past human buildings including outstanding cultural properties and UNESCO heritage sites. Research about protection/monitoring of cultural heritage is crucial to preserve our cultural properties and (with them also) our history and identity. This paper is focused on the use of the open-source Google Earth Engine tool herein used to analyze flood and fire events which affected the area of Metaponto (southern Italy), near the homonymous Greek-Roman archaeological site. The use of the Google Earth Engine has allowed the supervised and unsupervised classification of areas affected by flooding (2013–2020) and fire (2017) in the past years, obtaining remarkable results and useful information for setting up strategies to mitigate damage and support the preservation of areas and landscape rich in cultural and natural heritage.


2021 ◽  
Vol 13 (22) ◽  
pp. 4683
Author(s):  
Masoumeh Aghababaei ◽  
Ataollah Ebrahimi ◽  
Ali Asghar Naghipour ◽  
Esmaeil Asadi ◽  
Jochem Verrelst

Vegetation Types (VTs) are important managerial units, and their identification serves as essential tools for the conservation of land covers. Despite a long history of Earth observation applications to assess and monitor land covers, the quantitative detection of sparse VTs remains problematic, especially in arid and semiarid areas. This research aimed to identify appropriate multi-temporal datasets to improve the accuracy of VTs classification in a heterogeneous landscape in Central Zagros, Iran. To do so, first the Normalized Difference Vegetation Index (NDVI) temporal profile of each VT was identified in the study area for the period of 2018, 2019, and 2020. This data revealed strong seasonal phenological patterns and key periods of VTs separation. It led us to select the optimal time series images to be used in the VTs classification. We then compared single-date and multi-temporal datasets of Landsat 8 images within the Google Earth Engine (GEE) platform as the input to the Random Forest classifier for VTs detection. The single-date classification gave a median Overall Kappa (OK) and Overall Accuracy (OA) of 51% and 64%, respectively. Instead, using multi-temporal images led to an overall kappa accuracy of 74% and an overall accuracy of 81%. Thus, the exploitation of multi-temporal datasets favored accurate VTs classification. In addition, the presented results underline that available open access cloud-computing platforms such as the GEE facilitates identifying optimal periods and multitemporal imagery for VTs classification.


Author(s):  
Ali Ben Abbes ◽  
Imed Riadh Farah

Due to the growing advances in their temporal, spatial, and spectral resolutions, remotely sensed data continues to provide tools for a wide variety of environmental applications. This chapter presents the benefits and difficulties of Multi-Temporal Satellite Image (MTSI) for land use. Predicting land use changes using remote sensing is an area of interest that has been attracting increasing attention. Land use analysis from high temporal resolution remotely sensed images is important to promote better decisions for sustainable management land cover. The purpose of this book chapter is to review the background of using Hidden Markov Model (HMM) in land use change prediction, to discuss the difference on modeling using stationary as well as non-stationary data and to provide examples of both case studies (e.g. vegetation monitoring, urban growth).


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