scholarly journals A Modified KNN Method for Mapping the Leaf Area Index in Arid and Semi-Arid Areas of China

2020 ◽  
Vol 12 (11) ◽  
pp. 1884 ◽  
Author(s):  
Fugen Jiang ◽  
Andrew R. Smith ◽  
Mykola Kutia ◽  
Guangxing Wang ◽  
Hua Liu ◽  
...  
Keyword(s):  
Spectral Reflectance ◽  
Prediction Accuracy ◽  
Field Data ◽  
Vegetation Indices ◽  
Arid Areas ◽  
Vegetation Canopy ◽  
Area Index ◽  
Red Edge ◽  
Semi Arid ◽  
Sentinel 2

As an important vegetation canopy parameter, the leaf area index (LAI) plays a critical role in forest growth modeling and vegetation health assessment. Estimating LAI is helpful for understanding vegetation growth and global ecological processes. Machine learning methods such as k-nearest neighbors (kNN) and random forest (RF) with remote sensing images have been widely used for mapping LAI. However, the accuracy of mapping LAI in arid and semi-arid areas using these methods is limited due to remote and large areas, the high cost of collecting field data, and the great spatial variability of the vegetation canopy. Here, a novel and modified kNN method was presented for mapping LAI in arid and semi-arid areas of China using Sentinel-2 and Landsat 8 images with field data collected in Ganzhou and Kangbao of China. The modified kNN was developed by integrating the traditional kNN estimation and RF classification. The results were compared with those from kNN and RF regression alone using three sets of input predictors: (i) spectral reflectance bands (input 1); (ii) vegetation indices (input 2); and (iii) a combination of spectral reflectance bands and vegetation indices (input 3). Our analysis showed that in Ganzhou, the red-edge bands of the Sentinel-2 image had a high correlation with LAI. Using the red-edge band-derived vegetation indices increased the accuracy of mapping LAI compared with using other spectral variables. Among the three sets of input predictors, input 3 resulted in the highest prediction accuracy. Based on the combination, the values of RMSE obtained by the traditional kNN, RF, and modified kNN were 0.526, 0.523, and 0.372, respectively, and the modified kNN significantly improved the accuracy of LAI prediction by 29.3% and 28.9% compared with the kNN and RF alone, respectively. A similar improvement was achieved for input 1 and input 2. In Kangbao, the improvement of the prediction accuracy obtained by the modified kNN was 31.4% compared with both the kNN and RF. Therefore, this study implied that the modified kNN provided the potential to improve the accuracy of mapping LAI in arid and semi-arid regions using the images.

Red-Edge Band Vegetation Indices for Leaf Area Index Estimation From Sentinel-2/MSI Imagery

2020 ◽  
Vol 58 (2) ◽  
pp. 826-840 ◽  
Author(s):  
Yuanheng Sun ◽  
Qiming Qin ◽  
Huazhong Ren ◽  
Tianyuan Zhang ◽  
Shanshan Chen
Keyword(s):  
Leaf Area Index ◽  
Leaf Area ◽  
Vegetation Indices ◽  
Area Index ◽  
Red Edge ◽  
Index Estimation ◽  
Edge Band ◽  
Sentinel 2

scholarly journals The Utility of Sentinel-2 MSI Data to Estimate Wetland Vegetation Leaf Area Index in Natural and Rehabilitated Wetlands

Geographies ◽  
2021 ◽  
Vol 1 (3) ◽  
pp. 178-191
Author(s):  
Nonjabulo Neliswa Tshabalala ◽  
Onisimo Mutanga ◽  
Mbulisi Sibanda
Keyword(s):  
Leaf Area Index ◽  
Leaf Area ◽  
Vegetation Indices ◽  
Wetland Vegetation ◽  
Electromagnetic Spectrum ◽  
Vegetation Productivity ◽  
Area Index ◽  
Wetland Ecosystems ◽  
Red Edge ◽  
Sentinel 2

Wetland ecosystems are being modified and threatened due to anthropogenic activities and climate change, hence the urgent need for wetland restoration. Wetland rehabilitation is important in the reversal of these dire conditions, and this can be pursued through restoring damaged wetland ecosystems and recovering wetland vegetation. Wetland biophysical properties such as leaf area index (LAI) are important indicators of vegetation productivity and stress. Therefore, the study sought to test the potential of Sentinel-2 multispectral instrument (MSI) derived standard bands, traditional vegetation indices and red-edge derived vegetation indices in estimating wetland vegetation LAI across natural and rehabilitated wetlands. Traditional field surveys were carried out for LAI measurement of wetland vegetation using the LAI-2200 Plant Canopy Analyser. Partial Least Squares Regression (PLSR) algorithms were used to compare the estimation strength of models derived from all Sentinel-2 MSI bands, conventional vegetation indices and red-edge derived vegetation indices. Leave-one-out cross-validation (LOOCV) was completed on a selected measured dataset to evaluate the performance and accuracy of the estimation models. The optimal models for estimating wetland vegetation LAI were produced based on red-edge bands centred between the 705–783 nm as well as the 865 nm (Band 8a) of the electromagnetic spectrum. The results showed that vegetation indices derived from red-edge bands performed better at estimating LAI for both wetlands with a root mean square error of prediction (RMSE) of 0.32 m2/m2 and R2 of 0.61 for the natural wetland, and RMSE of 0.51 m2/m2 and R2 of 0.75 for the rehabilitated wetland. The optimal model for predicting LAI across natural and rehabilitated wetlands was attained based on red-edge bands centred at 705 nm (Band 5), 740 nm (Band 6), 783 nm (Band 7) as well as 865 nm (Band 8a) yielding a RMSE of 0.51 m2/m2 and R2 of 0.54. Overall, the results underscore the importance of remotely sensed derived data and vegetation indices in the optimal characterisation of wetland vegetation productivity which can be utilized in the monitoring and management of wetland ecosystems.

scholarly journals ESTIMATION OF MANGROVE FOREST ABOVEGROUND BIOMASS USING MULTISPECTRAL BANDS, VEGETATION INDICES AND BIOPHYSICAL VARIABLES DERIVED FROM OPTICAL SATELLITE IMAGERIES: RAPIDEYE, PLANETSCOPE AND SENTINEL-2

2018 ◽  
Vol IV-3 ◽  
pp. 29-36 ◽  
Author(s):  
Alvin Balidoy Baloloy ◽  
Ariel Conferido Blanco ◽  
Christian Gumbao Candido ◽  
Reginal Jay Labadisos Argamosa ◽  
John Bart Lovern Caboboy Dumalag ◽  
...  
Keyword(s):  
Linear Regression ◽  
Mangrove Forest ◽  
Field Data ◽  
Vegetation Index ◽  
Prediction Models ◽  
Vegetation Indices ◽  
Satellite Systems ◽  
Red Edge ◽  
Simple Ratio ◽  
Sentinel 2

Aboveground biomass estimation (AGB) is essential in determining the environmental and economic values of mangrove forests. Biomass prediction models can be developed through integration of remote sensing, field data and statistical models. This study aims to assess and compare the biomass predictor potential of multispectral bands, vegetation indices and biophysical variables that can be derived from three optical satellite systems: the Sentinel-2 with 10&amp;thinsp;m, 20&amp;thinsp;m and 60&amp;thinsp;m resolution; RapidEye with 5m resolution and PlanetScope with 3m ground resolution. Field data for biomass were collected from a <i>Rhizophoraceae</i>-dominated mangrove forest in Masinloc, Zambales, Philippines where 30 test plots (1.2&amp;thinsp;ha) and 5 validation plots (0.2&amp;thinsp;ha) were established. Prior to the generation of indices, images from the three satellite systems were pre-processed using atmospheric correction tools in SNAP (Sentinel-2), ENVI (RapidEye) and python (PlanetScope). The major predictor bands tested are Blue, Green and Red, which are present in the three systems; and Red-edge band from Sentinel-2 and Rapideye. The tested vegetation index predictors are Normalized Differenced Vegetation Index (NDVI), Soil-adjusted Vegetation Index (SAVI), Green-NDVI (GNDVI), Simple Ratio (SR), and Red-edge Simple Ratio (SRre). The study generated prediction models through conventional linear regression and multivariate regression. Higher coefficient of determination (r<sup>2</sup>) values were obtained using multispectral band predictors for Sentinel-2 (r<sup>2</sup>&amp;thinsp;=&amp;thinsp;0.89) and Planetscope (r<sup>2</sup>&amp;thinsp;=&amp;thinsp;0.80); and vegetation indices for RapidEye (r<sup>2</sup>&amp;thinsp;=&amp;thinsp;0.92). Multivariate Adaptive Regression Spline (MARS) models performed better than the linear regression models with r<sup>2</sup> ranging from 0.62 to 0.92. Based on the r<sup>2</sup> and root-mean-square errors (RMSE’s), the best biomass prediction model per satellite were chosen and maps were generated. The accuracy of predicted biomass maps were high for both Sentinel-2 (r<sup>2</sup>&amp;thinsp;=&amp;thinsp;0.92) and RapidEye data (r<sup>2</sup>&amp;thinsp;=&amp;thinsp;0.91).

scholarly journals Retrieval of Evapotranspiration from Sentinel-2: Comparison of Vegetation Indices, Semi-Empirical Models and SNAP Biophysical Processor Approach

Agronomy ◽  
2019 ◽  
Vol 9 (10) ◽  
pp. 663 ◽  
Author(s):  
Nieves Pasqualotto ◽  
Guido D’Urso ◽  
Salvatore Falanga Bolognesi ◽  
Oscar Rosario Belfiore ◽  
Shari Van Wittenberghe ◽  
...  
Keyword(s):  
Remote Sensing ◽  
Extinction Coefficient ◽  
Vegetation Indices ◽  
Area Index ◽  
Edge Zone ◽  
Red Edge ◽  
Agricultural Areas ◽  
Semi Empirical ◽  
Sentinel 2

Remote sensing evapotranspiration estimation over agricultural areas is increasingly used for irrigation management during the crop growing cycle. Different methodologies based on remote sensing have emerged for the leaf area index (LAI) and the canopy chlorophyll content (CCC) estimation, essential biophysical parameters for crop evapotranspiration monitoring. Using Sentinel-2 (S2) spectral information, this study performed a comparative analysis of empirical (vegetation indices), semi-empirical (CLAIR model with fixed and calibrated extinction coefficient) and artificial neural network S2 products derived from the Sentinel Application Platform Software (SNAP) biophysical processor (ANN S2 products) approaches for the estimation of LAI and CCC. Four independent in situ collected datasets of LAI and CCC, obtained with standard instruments (LAI-2000, SPAD) and a smartphone application (PocketLAI), were used. The ANN S2 products present good statistics for LAI (R2 > 0.70, root mean square error (RMSE) < 0.86) and CCC (R2 > 0.75, RMSE < 0.68 g/m2) retrievals. The normalized Sentinel-2 LAI index (SeLI) is the index that presents good statistics in each dataset (R2 > 0.71, RMSE < 0.78) and for the CCC, the ratio red-edge chlorophyll index (CIred-edge) (R2 > 0.67, RMSE < 0.62 g/m2). Both indices use bands located in the red-edge zone, highlighting the importance of this region. The LAI CLAIR model with a fixed extinction coefficient value produces a R2 > 0.63 and a RMSE < 1.47 and calibrating this coefficient for each study area only improves the statistics in two areas (RMSE ≈ 0.70). Finally, this study analyzed the influence of the LAI parameter estimated with the different methodologies in the calculation of crop potential evapotranspiration (ETc) with the adapted Penman–Monteith (FAO-56 PM), using a multi-temporal dataset. The results were compared with ETc estimated as the product of the reference evapotranspiration (ETo) and on the crop coefficient (Kc) derived from FAO table values. In the absence of independent reference ET data, the estimated ETc with the LAI in situ values were considered as the proxy of the ground-truth. ETc estimated with the ANN S2 LAI product is the closest to the ETc values calculated with the LAI in situ (R2 > 0.90, RMSE < 0.41 mm/d). Our findings indicate the good validation of ANN S2 LAI and CCC products and their further suitability for the implementation in evapotranspiration retrieval of agricultural areas.

scholarly journals Assessing Leaf Biomass of Agave sisalana Using Sentinel-2 Vegetation Indices

2021 ◽  
Vol 13 (2) ◽  
pp. 233
Author(s):  
Ilja Vuorinne ◽  
Janne Heiskanen ◽  
Petri K. E. Pellikka
Keyword(s):  
Near Infrared ◽  
Vegetation Indices ◽  
Fibre Production ◽  
Additive Models ◽  
Leaf Biomass ◽  
Ground Vegetation ◽  
Perennial Crop ◽  
Red Edge ◽  
Agave Sisalana ◽  
Sentinel 2

Biomass is a principal variable in crop monitoring and management and in assessing carbon cycling. Remote sensing combined with field measurements can be used to estimate biomass over large areas. This study assessed leaf biomass of Agave sisalana (sisal), a perennial crop whose leaves are grown for fibre production in tropical and subtropical regions. Furthermore, the residue from fibre production can be used to produce bioenergy through anaerobic digestion. First, biomass was estimated for 58 field plots using an allometric approach. Then, Sentinel-2 multispectral satellite imagery was used to model biomass in an 8851-ha plantation in semi-arid south-eastern Kenya. Generalised Additive Models were employed to explore how well biomass was explained by various spectral vegetation indices (VIs). The highest performance (explained deviance = 76%, RMSE = 5.15 Mg ha−1) was achieved with ratio and normalised difference VIs based on the green (R560), red-edge (R740 and R783), and near-infrared (R865) spectral bands. Heterogeneity of ground vegetation and resulting background effects seemed to limit model performance. The best performing VI (R740/R783) was used to predict plantation biomass that ranged from 0 to 46.7 Mg ha−1 (mean biomass 10.6 Mg ha−1). The modelling showed that multispectral data are suitable for assessing sisal leaf biomass at the plantation level and in individual blocks. Although these results demonstrate the value of Sentinel-2 red-edge bands at 20-m resolution, the difference from the best model based on green and near-infrared bands at 10-m resolution was rather small.

scholarly journals Spaceborne Estimation of Leaf Area Index in Cotton, Tomato, and Wheat Using Sentinel-2

Land ◽  
2021 ◽  
Vol 10 (5) ◽  
pp. 505
Author(s):  
Gregoriy Kaplan ◽  
Offer Rozenstein
Keyword(s):  
Water Vapor ◽  
Leaf Area Index ◽  
Leaf Area ◽  
Vegetation Index ◽  
Near Infrared ◽  
Linear Regression Models ◽  
Area Index ◽  
Estimation Performance ◽  
Red Edge ◽  
Sentinel 2

Satellite remote sensing is a useful tool for estimating crop variables, particularly Leaf Area Index (LAI), which plays a pivotal role in monitoring crop development. The goal of this study was to identify the optimal Sentinel-2 bands for LAI estimation and to derive Vegetation Indices (VI) that are well correlated with LAI. Linear regression models between time series of Sentinel-2 imagery and field-measured LAI showed that Sentinel-2 Band-8A—Narrow Near InfraRed (NIR) is more accurate for LAI estimation than the traditionally used Band-8 (NIR). Band-5 (Red edge-1) showed the lowest performance out of all red edge bands in tomato and cotton. A novel finding was that Band 9 (Water vapor) showed a very high correlation with LAI. Bands 1, 2, 3, 4, 5, 11, and 12 were saturated at LAI ≈ 3 in cotton and tomato. Bands 6, 7, 8, 8A, and 9 were not saturated at high LAI values in cotton and tomato. The tomato, cotton, and wheat LAI estimation performance of ReNDVI (R2 = 0.79, 0.98, 0.83, respectively) and two new VIs (WEVI (Water vapor red Edge Vegetation Index) (R2 = 0.81, 0.96, 0.71, respectively) and WNEVI (Water vapor narrow NIR red Edge Vegetation index) (R2 = 0.79, 0.98, 0.79, respectively)) were higher than the LAI estimation performance of the commonly used NDVI (R2 = 0.66, 0.83, 0.05, respectively) and other common VIs tested in this study. Consequently, reNDVI, WEVI, and WNEVI can facilitate more accurate agricultural monitoring than traditional VIs.

scholarly journals Quantifying Uncertainty and Bridging the Scaling Gap in the Retrieval of Leaf Area Index by Coupling Sentinel-2 and UAV Observations

2020 ◽  
Vol 12 (11) ◽  
pp. 1843 ◽  
Author(s):  
Andrew Revill ◽  
Anna Florence ◽  
Alasdair MacArthur ◽  
Stephen Hoad ◽  
Robert Rees ◽  
...  
Keyword(s):  
Spatial Heterogeneity ◽  
Leaf Area Index ◽  
Leaf Area ◽  
Growth Stages ◽  
Two Stage ◽  
Area Index ◽  
Field Surveys ◽  
Red Edge ◽  
Calibration Approach ◽  
Sentinel 2

Leaf area index (LAI) estimates can inform decision-making in crop management. The European Space Agency’s Sentinel-2 satellite, with observations in the red-edge spectral region, can monitor crops globally at sub-field spatial resolutions (10–20 m). However, satellite LAI estimates require calibration with ground measurements. Calibration is challenged by spatial heterogeneity and scale mismatches between field and satellite measurements. Unmanned Aerial Vehicles (UAVs), generating high-resolution (cm-scale) LAI estimates, provide intermediary observations that we use here to characterise uncertainty and reduce spatial scaling discrepancies between Sentinel-2 observations and field surveys. We use a novel UAV multispectral sensor that matches Sentinel-2 spectral bands, flown in conjunction with LAI ground measurements. UAV and field surveys were conducted on multiple dates—coinciding with different wheat growth stages—that corresponded to Sentinel-2 overpasses. We compared chlorophyll red-edge index (CIred-edge) maps, derived from the Sentinel-2 and UAV platforms. We used Gaussian processes regression machine learning to calibrate a UAV model for LAI, based on ground data. Using the UAV LAI, we evaluated a two-stage calibration approach for generating robust LAI estimates from Sentinel-2. The agreement between Sentinel-2 and UAV CIred-edge values increased with growth stage—R2 ranged from 0.32 (stem elongation) to 0.75 (milk development). The CIred-edge variance between the two platforms was more comparable later in the growing season due to a more homogeneous and closed wheat canopy. The single-stage Sentinel-2 LAI calibration (i.e., direct calibration from ground measurements) performed poorly (mean R2 = 0.29, mean NRMSE = 17%) when compared to the two-stage calibration using the UAV data (mean R2 = 0.88, mean NRMSE = 8%). The two-stage approach reduced both errors and biases by >50%. By upscaling ground measurements and providing more representative model training samples, UAV observations provide an effective and viable means of enhancing Sentinel-2 wheat LAI retrievals. We anticipate that our UAV calibration approach to resolving spatial heterogeneity would enhance the retrieval accuracy of LAI and additional biophysical variables for other arable crop types and a broader range of vegetation cover types.

scholarly journals Global vegetation variability and its response to elevated CO<sub>2</sub>, global warming, and climate variability – a study using the offline SSiB4/TRIFFID model and satellite data

2019 ◽  
Vol 10 (1) ◽  
pp. 9-29 ◽  
Author(s):  
Ye Liu ◽  
Yongkang Xue ◽  
Glen MacDonald ◽  
Peter Cox ◽  
Zhengqiu Zhang
Keyword(s):  
Global Warming ◽  
Climate Variability ◽  
Environmental Drivers ◽  
Arid Areas ◽  
Area Index ◽  
Substantial Impact ◽  
Positive Effects ◽  
Vegetation Fraction ◽  
Before And After ◽  
Semi Arid

Abstract. The climate regime shift during the 1980s had a substantial impact on the terrestrial ecosystems and vegetation at different scales. However, the mechanisms driving vegetation changes, before and after the shift, remain unclear. In this study, we used a biophysical dynamic vegetation model to estimate large-scale trends in terms of carbon fixation, vegetation growth, and expansion during the period 1958–2007, and to attribute these changes to environmental drivers including elevated atmospheric CO2 concentration (hereafter eCO2), global warming, and climate variability (hereafter CV). Simulated leaf area index (LAI) and gross primary production (GPP) were evaluated against observation-based data. Significant spatial correlations are found (correlations > 0.87), along with regionally varying temporal correlations of 0.34–0.80 for LAI and 0.45–0.83 for GPP. More than 40 % of the global land area shows significant positive (increase) or negative (decrease) trends in LAI and GPP during 1958–2007. Regions over the globe show different characteristics in terms of ecosystem trends before and after the 1980s. While 11.7 % and 19.3 % of land have had consistently positive LAI and GPP trends, respectively, since 1958, 17.1 % and 20.1 % of land saw LAI and GPP trends, respectively, reverse during the 1980s. Vegetation fraction cover (FRAC) trends, representing vegetation expansion and/or shrinking, are found at the edges of semi-arid areas and polar areas. Environmental drivers affect the change in ecosystem trend over different regions. Overall, eCO2 consistently contributes to positive LAI and GPP trends in the tropics. Global warming mostly affects LAI, with positive effects in high latitudes and negative effects in subtropical semi-arid areas. CV is found to dominate the variability of FRAC, LAI, and GPP in the semi-humid and semi-arid areas. The eCO2 and global warming effects increased after the 1980s, while the CV effect reversed during the 1980s. In addition, plant competition is shown to have played an important role in determining which driver dominated the regional trends. This paper presents new insight into ecosystem variability and changes in the varying climate since the 1950s.

scholarly journals VIS-NIR, Red-Edge and NIR-Shoulder Based Normalized Vegetation Indices Response to Co-Varying Leaf and Canopy Structural Traits in Heterogeneous Grasslands

2020 ◽  
Vol 12 (14) ◽  
pp. 2254 ◽  
Author(s):  
Hafiz Ali Imran ◽  
Damiano Gianelle ◽  
Duccio Rocchini ◽  
Michele Dalponte ◽  
M. Pilar Martín ◽  
...  
Keyword(s):  
Near Infrared ◽  
Spatial Scales ◽  
Vegetation Indices ◽  
Radiative Transfer Model ◽  
Transfer Model ◽  
Sharp Change ◽  
Full Potential ◽  
Area Index ◽  
Red Edge ◽  
Temporal And Spatial

Red-edge (RE) spectral vegetation indices (SVIs)—combining bands on the sharp change region between near infrared (NIR) and visible (VIS) bands—alongside with SVIs solely based on NIR-shoulder bands (wavelengths 750–900 nm) have been shown to perform well in estimating leaf area index (LAI) from proximal and remote sensors. In this work, we used RE and NIR-shoulder SVIs to assess the full potential of bands provided by Sentinel-2 (S-2) and Sentinel-3 (S-3) sensors at both temporal and spatial scales for grassland LAI estimations. Ground temporal and spatial observations of hyperspectral reflectance and LAI were carried out at two grassland sites (Monte Bondone, Italy, and Neustift, Austria). A strong correlation (R2 > 0.8) was observed between grassland LAI and both RE and NIR-shoulder SVIs on a temporal basis, but not on a spatial basis. Using the PROSAIL Radiative Transfer Model (RTM), we demonstrated that grassland structural heterogeneity strongly affects the ability to retrieve LAI, with high uncertainties due to structural and biochemical PTs co-variation. The RENDVI783.740 SVI was the least affected by traits co-variation, and more studies are needed to confirm its potential for heterogeneous grasslands LAI monitoring using S-2, S-3, or Gaofen-5 (GF-5) and PRISMA bands.

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