scholarly journals Longitudinal, Lateral, Vertical, and Temporal Thermal Heterogeneity in a Large Impounded River: Implications for Cold-Water Refuges

2020 ◽  
Vol 12 (9) ◽  
pp. 1386 ◽  
Author(s):  
Francine H. Mejia ◽  
Christian E. Torgersen ◽  
Eric K. Berntsen ◽  
Joseph R. Maroney ◽  
Jason M. Connor ◽  
...  

Dam operations can affect mixing of the water column, thereby influencing thermal heterogeneity spatially and temporally. This occurs by restricting or eliminating connectivity in longitudinal, lateral, vertical, and temporal dimensions. We examined thermal heterogeneity across space and time and identified potential cold-water refuges for salmonids in a large impounded river in inland northwestern USA. To describe these patterns, we used thermal infrared (TIR) imagery, in situ thermographs, and high-resolution, 3-D hydraulic mapping. We explained the median water temperature and probability of occurrence of cool-water areas using generalized additive models (GAMs) at reach and subcatchment scales, and we evaluated potential cold-water refuge occurrence in relation to these patterns. We demonstrated that (1) lateral contributions from tributaries dominated thermal heterogeneity, (2) thermal variability at confluences was approximately an order of magnitude greater than of the main stem, (3) potential cold-water refuges were mostly found at confluences, and (4) the probability of occurrence of cool areas and median water temperature were associated with channel geomorphology and distance from dam. These findings highlight the importance of using multiple approaches to describe thermal heterogeneity in large, impounded rivers and the need to incorporate these types of rivers in the understanding of thermal riverscapes because of their limited representation in the literature.

2019 ◽  
Vol 6 (Supplement_2) ◽  
pp. S442-S443
Author(s):  
Brooke K Decker ◽  
Michihiko Goto ◽  
Shantini D Gamage ◽  
Stephen Kralovic

Abstract Background Legionnaires’ disease is a potentially life-threatening illness often associated with Legionella growth in water sources. Oxidizing biocides, such as chlorine (CL), monochloramine (MC) and chlorine dioxide (CD), can reduce Legionella contamination. However, limited guidance exists regarding optimal target biocide levels in building water systems to prevent Legionella growth. We examined Legionella and biocide data collected by Department of Veterans Affairs medical facilities nationally to estimate effective biocide levels. Methods Water samples collected at point of use for routine surveillance purposes between 2015 and 2017 were used for this analysis. Samples were limited to those with reported biocide being CL, MC or CD. Samples with biocide levels above safe drinking water maximums and from nonpotable water sources were excluded. Samples were stratified by hot and cold water and univariate logistic generalized additive models were used to assess nonlinear associations of probability of Legionella positivity and biocide level. Results The dataset included 144,458 samples (cold: 72,674; hot: 71,784) from 789 buildings at 168 hospitals, with 99,419 samples with reported biocide as CL, 40,922 as MC, and 4,117 as CD. For CL, cold water analysis showed a minimum probability of positivity at approximately 0.5 parts per million (ppm), but with a second minimum at 2 ppm. Hot water showed an inflection point around 0.6 ppm, but the likelihood of positivity continued to decrease until plateauing beyond 2 ppm (Figure 1). Cold water with MC showed a minimum probability of positivity at 0.3 ppm followed by a second minimum at 1.7 ppm with plateau beyond that concentration. Hot water showed a similar graph with initial minimum at 0.25 ppm and a second minimum at 1.6 ppm (Figure 2). CD graphs for both hot and cold showed a decrease at 0.2 ppm (Figure 3). Conclusion The variability in the dynamics of Legionella inhibition by different biocides as seen in our analysis indicates minimum biocide targets for the different agents. For CL and MC, biocide levels >2 ppm at point of use in building water systems may not provide added benefit for suppression of Legionella. Disclosures All authors: No reported disclosures.


2021 ◽  
Author(s):  
Samuel M. Bashevkin ◽  
Brian Mahardja ◽  
Larry R. Brown

Temperature is a key controlling variable from subcellular to ecosystem scales. Thus, climatic warming is expected to have broad impacts, especially in economically and ecologically valuable systems such as estuaries. The heavily managed upper San Francisco Estuary (SFE) supplies water to millions of people and is home to fish species of high conservation, commercial, and recreational interest. Despite a long monitoring record (> 50 years), we do not yet know how water temperatures have already changed or how trends vary spatially or seasonally. We fit generalized additive models on an integrated database of discrete water temperature observations to estimate long-term trends with spatio-seasonal variability. We found that water temperatures have increased 0.017 °C/year on average over the past 50 years. Rates of temperature change have varied over time, but warming was predominant. Temperature increases were most widespread in the late-fall to winter (November to February) and mid-spring (April to June), coinciding with the winter development of juvenile Chinook Salmon and spring spawning window of the endangered Delta Smelt. Warming was fastest in the northern regions, a key fish migration corridor with important tidal wetland habitat. However, no long-term temperature trends were detected in October and were only observed in some regions in May, July, and August. These results can help identify optimal areas for restoration or refugia to buffer the effects of a warming climate, and the methods can be leveraged to understand the spatiotemporal variability in climate warming patterns in other aquatic systems.


2020 ◽  
Vol 75 (6) ◽  
pp. 1525-1529 ◽  
Author(s):  
Clémence Bourély ◽  
Thomas Coeffic ◽  
Jocelyne Caillon ◽  
Sonia Thibaut ◽  
Géraldine Cazeau ◽  
...  

Abstract Objectives To characterize and compare resistance trends in clinical Escherichia coli isolates from humans, food-producing animals (poultry, cattle and swine) and pets (dogs and cats). Methods Antibiogram results collected between January 2014 and December 2017 by MedQual [the French surveillance network for antimicrobial resistance (AMR) in bacteria isolated from the community] and RESAPATH (the French surveillance network for AMR in bacteria from diseased animals) were analysed, focusing on resistance to antibiotics of common interest to human and veterinary medicine. Resistance dynamics were investigated using generalized additive models. Results In total, 743 637 antibiograms from humans, 48 170 from food-producing animals and 7750 from pets were analysed. For each antibiotic investigated, the resistance proportions of isolates collected from humans were of the same order of magnitude as those from food-producing animals or pets. However, resistance trends in humans differed from those observed in pets and food-producing animals over the period studied. For example, resistance to third-generation cephalosporins and fluoroquinolones was almost always below 10% for both humans and animals. However, in contrast to the notable decreases in resistance observed in both food-producing animals and pets, resistance in humans decreased only slightly. Conclusions Despite several potential biases in the data, the resistance trends remain meaningful. The strength of the parallel is based on similar data collection in humans and animals and on a similar statistical methodology. Resistance dynamics seemed specific to each species, reflecting different antibiotic-use practices. These results advocate applying the efforts already being made to reduce antibiotic use to all sectors and all species, both in human and veterinary medicine.


2016 ◽  
Vol 13 (15) ◽  
pp. 4555-4567 ◽  
Author(s):  
Hiroko Sasaki ◽  
Kohei Matsuno ◽  
Amane Fujiwara ◽  
Misaki Onuka ◽  
Atsushi Yamaguchi ◽  
...  

Abstract. The advection of warm Pacific water and the reduction in sea ice in the western Arctic Ocean may influence the abundance and distribution of copepods, a key component of food webs. To quantify the factors affecting the abundance of copepods in the northern Bering and Chukchi seas, we constructed habitat models explaining the spatial patterns of large and small Arctic and Pacific copepods separately. Copepods were sampled using NORPAC (North Pacific Standard) nets. The structures of water masses indexed by principle component analysis scores, satellite-derived timing of sea ice retreat, bottom depth and chlorophyll a concentration were integrated into generalized additive models as explanatory variables. The adequate models for all copepods exhibited clear continuous relationships between the abundance of copepods and the indexed water masses. Large Arctic copepods were abundant at stations where the bottom layer was saline; however they were scarce at stations where warm fresh water formed the upper layer. Small Arctic copepods were abundant at stations where the upper layer was warm and saline and the bottom layer was cold and highly saline. In contrast, Pacific copepods were abundant at stations where the Pacific-origin water mass was predominant (i.e. a warm, saline upper layer and saline and a highly saline bottom layer). All copepod groups showed a positive relationship with early sea ice retreat. Early sea ice retreat has been reported to initiate spring blooms in open water, allowing copepods to utilize more food while maintaining their high activity in warm water without sea ice and cold water. This finding indicates that early sea ice retreat has positive effects on the abundance of all copepod groups in the northern Bering and Chukchi seas, suggesting a change from a pelagic–benthic-type ecosystem to a pelagic–pelagic type.


Author(s):  
François Freddy Ateba ◽  
Manuel Febrero-Bande ◽  
Issaka Sagara ◽  
Nafomon Sogoba ◽  
Mahamoudou Touré ◽  
...  

Mali aims to reach the pre-elimination stage of malaria by the next decade. This study used functional regression models to predict the incidence of malaria as a function of past meteorological patterns to better prevent and to act proactively against impending malaria outbreaks. All data were collected over a five-year period (2012–2017) from 1400 persons who sought treatment at Dangassa’s community health center. Rainfall, temperature, humidity, and wind speed variables were collected. Functional Generalized Spectral Additive Model (FGSAM), Functional Generalized Linear Model (FGLM), and Functional Generalized Kernel Additive Model (FGKAM) were used to predict malaria incidence as a function of the pattern of meteorological indicators over a continuum of the 18 weeks preceding the week of interest. Their respective outcomes were compared in terms of predictive abilities. The results showed that (1) the highest malaria incidence rate occurred in the village 10 to 12 weeks after we observed a pattern of air humidity levels >65%, combined with two or more consecutive rain episodes and a mean wind speed <1.8 m/s; (2) among the three models, the FGLM obtained the best results in terms of prediction; and (3) FGSAM was shown to be a good compromise between FGLM and FGKAM in terms of flexibility and simplicity. The models showed that some meteorological conditions may provide a basis for detection of future outbreaks of malaria. The models developed in this paper are useful for implementing preventive strategies using past meteorological and past malaria incidence.


Author(s):  
Mark David Walker ◽  
Mihály Sulyok

Abstract Background Restrictions on social interaction and movement were implemented by the German government in March 2020 to reduce the transmission of coronavirus disease 2019 (COVID-19). Apple's “Mobility Trends” (AMT) data details levels of community mobility; it is a novel resource of potential use to epidemiologists. Objective The aim of the study is to use AMT data to examine the relationship between mobility and COVID-19 case occurrence for Germany. Is a change in mobility apparent following COVID-19 and the implementation of social restrictions? Is there a relationship between mobility and COVID-19 occurrence in Germany? Methods AMT data illustrates mobility levels throughout the epidemic, allowing the relationship between mobility and disease to be examined. Generalized additive models (GAMs) were established for Germany, with mobility categories, and date, as explanatory variables, and case numbers as response. Results Clear reductions in mobility occurred following the implementation of movement restrictions. There was a negative correlation between mobility and confirmed case numbers. GAM using all three categories of mobility data accounted for case occurrence as well and was favorable (AIC or Akaike Information Criterion: 2504) to models using categories separately (AIC with “driving,” 2511. “transit,” 2513. “walking,” 2508). Conclusion These results suggest an association between mobility and case occurrence. Further examination of the relationship between movement restrictions and COVID-19 transmission may be pertinent. The study shows how new sources of online data can be used to investigate problems in epidemiology.


2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Narayan Sharma ◽  
René Schwendimann ◽  
Olga Endrich ◽  
Dietmar Ausserhofer ◽  
Michael Simon

Abstract Background Understanding how comorbidity measures contribute to patient mortality is essential both to describe patient health status and to adjust for risks and potential confounding. The Charlson and Elixhauser comorbidity indices are well-established for risk adjustment and mortality prediction. Still, a different set of comorbidity weights might improve the prediction of in-hospital mortality. The present study, therefore, aimed to derive a set of new Swiss Elixhauser comorbidity weightings, to validate and compare them against those of the Charlson and Elixhauser-based van Walraven weights in an adult in-patient population-based cohort of general hospitals. Methods Retrospective analysis was conducted with routine data of 102 Swiss general hospitals (2012–2017) for 6.09 million inpatient cases. To derive the Swiss weightings for the Elixhauser comorbidity index, we randomly halved the inpatient data and validated the results of part 1 alongside the established weighting systems in part 2, to predict in-hospital mortality. Charlson and van Walraven weights were applied to Charlson and Elixhauser comorbidity indices. Derivation and validation of weightings were conducted with generalized additive models adjusted for age, gender and hospital types. Results Overall, the Elixhauser indices, c-statistic with Swiss weights (0.867, 95% CI, 0.865–0.868) and van Walraven’s weights (0.863, 95% CI, 0.862–0.864) had substantial advantage over Charlson’s weights (0.850, 95% CI, 0.849–0.851) and in the derivation and validation groups. The net reclassification improvement of new Swiss weights improved the predictive performance by 1.6% on the Elixhauser-van Walraven and 4.9% on the Charlson weights. Conclusions All weightings confirmed previous results with the national dataset. The new Swiss weightings model improved slightly the prediction of in-hospital mortality in Swiss hospitals. The newly derive weights support patient population-based analysis of in-hospital mortality and seek country or specific cohort-based weightings.


2020 ◽  
Vol 79 (Suppl 1) ◽  
pp. 1252.2-1253
Author(s):  
R. Garofoli ◽  
M. Resche-Rigon ◽  
M. Dougados ◽  
D. Van der Heijde ◽  
C. Roux ◽  
...  

Background:Axial spondyloarthritis (axSpA) is a chronic rheumatic disease that encompasses various clinical presentations: inflammatory chronic back pain, peripheral manifestations and extra-articular manifestations. The current nomenclature divides axSpA in radiographic (in the presence of radiographic sacroiliitis) and non-radiographic (in the absence of radiographic sacroiliitis, with or without MRI sacroiliitis. Given that the functional burden of the disease appears to be greater in patients with radiographic forms, it seems crucial to be able to predict which patients will be more likely to develop structural damage over time. Predictive factors for radiographic progression in axSpA have been identified through use of traditional statistical models like logistic regression. However, these models present some limitations. In order to overcome these limitations and to improve the predictive performance, machine learning (ML) methods have been developed.Objectives:To compare ML models to traditional models to predict radiographic progression in patients with early axSpA.Methods:Study design: prospective French multicentric cohort study (DESIR cohort) with 5years of follow-up. Patients: all patients included in the cohort, i.e. 708 patients with inflammatory back pain for >3 months but <3 years, highly suggestive of axSpA. Data on the first 5 years of follow-up was used. Statistical analyses: radiographic progression was defined as progression either at the spine (increase of at least 1 point per 2 years of mSASSS scores) or at the sacroiliac joint (worsening of at least one grade of the mNY score between 2 visits). Traditional modelling: we first performed a bivariate analysis between our outcome (radiographic progression) and explanatory variables at baseline to select the variables to be included in our models and then built a logistic regression model (M1). Variable selection for traditional models was performed with 2 different methods: stepwise selection based on Akaike Information Criterion (stepAIC) method (M2), and the Least Absolute Shrinkage and Selection Operator (LASSO) method (M3). We also performed sensitivity analysis on all patients with manual backward method (M4) after multiple imputation of missing data. Machine learning modelling: using the “SuperLearner” package on R, we modelled radiographic progression with stepAIC, LASSO, random forest, Discrete Bayesian Additive Regression Trees Samplers (DBARTS), Generalized Additive Models (GAM), multivariate adaptive polynomial spline regression (polymars), Recursive Partitioning And Regression Trees (RPART) and Super Learner. Finally, the accuracy of traditional and ML models was compared based on their 10-foldcross-validated AUC (cv-AUC).Results:10-fold cv-AUC for traditional models were 0.79 and 0.78 for M2 and M3, respectively. The 3 best models in the ML algorithm were the GAM, the DBARTS and the Super Learner models, with 10-fold cv-AUC of: 0.77, 0.76 and 0.74, respectively (Table 1).Table 1.Comparison of 10-fold cross-validated AUC between best traditional and machine learning models.Best modelsCross-validated AUCTraditional models M2 (step AIC method)0.79 M3 (LASSO method)0.78Machine learning approach SL Discrete Bayesian Additive Regression Trees Samplers (DBARTS)0.76 SL Generalized Additive Models (GAM)0.77 Super Learner0.74AUC: Area Under the Curve; AIC: Akaike Information Criterion; LASSO: Least Absolute Shrinkage and Selection Operator; SL: SuperLearner. N = 295.Conclusion:Traditional models predicted better radiographic progression than ML models in this early axSpA population. Further ML algorithms image-based or with other artificial intelligence methods (e.g. deep learning) might perform better than traditional models in this setting.Acknowledgments:Thanks to the French National Society of Rheumatology and the DESIR cohort.Disclosure of Interests:Romain Garofoli: None declared, Matthieu resche-rigon: None declared, Maxime Dougados Grant/research support from: AbbVie, Eli Lilly, Merck, Novartis, Pfizer and UCB Pharma, Consultant of: AbbVie, Eli Lilly, Merck, Novartis, Pfizer and UCB Pharma, Speakers bureau: AbbVie, Eli Lilly, Merck, Novartis, Pfizer and UCB Pharma, Désirée van der Heijde Consultant of: AbbVie, Amgen, Astellas, AstraZeneca, BMS, Boehringer Ingelheim, Celgene, Cyxone, Daiichi, Eisai, Eli-Lilly, Galapagos, Gilead Sciences, Inc., Glaxo-Smith-Kline, Janssen, Merck, Novartis, Pfizer, Regeneron, Roche, Sanofi, Takeda, UCB Pharma; Director of Imaging Rheumatology BV, Christian Roux: None declared, Anna Moltó Grant/research support from: Pfizer, UCB, Consultant of: Abbvie, BMS, MSD, Novartis, Pfizer, UCB


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