scholarly journals Transcriptome Analysis Identifies Candidate Target Genes Involved in Glyphosate-Resistance Mechanism in Lolium multiflorum

Plants ◽  
2020 ◽  
Vol 9 (6) ◽  
pp. 685
Author(s):  
Joanei Cechin ◽  
Cristiano Piasecki ◽  
Daiane P. Benemann ◽  
Frederico S. Kremer ◽  
Vanessa Galli ◽  
...  
Keyword(s):  
Target Genes ◽  
De Novo ◽  
Average Length ◽  
Lolium Multiflorum ◽  
Significant Proportion ◽  
Resistance Mechanism ◽  
Glyphosate Resistance ◽  
Italian Ryegrass ◽  
Weed Species ◽  
Candidate Target

Italian ryegrass (Lolium multiflorum; LOLMU) is one of the most troublesome weeds in temperate regions in the world. This weed species interfere with wheat, corn, rye, and oat, causing significant crop yield losses. This species has evolved glyphosate resistance, making it difficult to control. The mechanisms of glyphosate resistance are still unknown, and an understanding thereof will favor the development of new strategies of management. The present study is the first transcriptome study in LOLMU using glyphosate-resistant and -sensitive biotypes, aiming to identify and to provide a list of the candidate target genes related to glyphosate resistance mechanism. The transcriptome was assembled de novo, producing 87,433 contigs with an N50 of 740 bp and an average length of 575 bp. There were 92 and 54 up- and down-regulated genes, respectively, in the resistant biotype, while a total of 1683 were differentially expressed in the sensitive biotype in response to glyphosate treatment. We selected 14 highly induced genes and seven with repressed expression in the resistant biotype in response to glyphosate. Of these genes, a significant proportion were related to the plasma membrane, indicating that there is a barrier making it difficult for glyphosate to enter the cell.

scholarly journals Transcriptomic Analysis Identifies New Non-Target Site Glyphosate-Resistance Genes in Conyza bonariensis

Plants ◽  
2019 ◽  
Vol 8 (6) ◽  
pp. 157 ◽  
Author(s):  
Cristiano Piasecki ◽  
Yongil Yang ◽  
Daiane P. Benemann ◽  
Frederico S. Kremer ◽  
Vanessa Galli ◽  
...  
Keyword(s):  
Molecular Mechanisms ◽  
Target Genes ◽  
De Novo ◽  
Average Length ◽  
Transcriptome Assembly ◽  
Glyphosate Resistance ◽  
Target Site ◽  
Differentially Expressed ◽  
Irreversible Damage ◽  
Conyza Bonariensis

Conyza bonariensis (hairy fleabane) is one of the most problematic and widespread glyphosate-resistant weeds in the world. This highly competitive weed species significantly interferes with crop growth and substantially decreases crop yield. Despite its agricultural importance, the molecular mechanisms of glyphosate resistance are still unknown. The present RNA-Seq study was performed with the goal of identifying differentially expressed candidate transcripts (genes) related to metabolism-based non-target site glyphosate resistance in C. bonariensis. The whole-transcriptome was de novo assembled from glyphosate-resistant and -sensitive biotypes of C. bonariensis from Southern Brazil. The RNA was extracted from untreated and glyphosate-treated plants at several timepoints up to 288 h after treatment in both biotypes. The transcriptome assembly produced 90,124 contigs with an average length of 777 bp and N50 of 1118 bp. In response to glyphosate treatment, differential gene expression analysis was performed on glyphosate-resistant and -sensitive biotypes. A total of 9622 genes were differentially expressed as a response to glyphosate treatment in both biotypes, 4297 (44.6%) being up- and 5325 (55.4%) down-regulated. The resistant biotype presented 1770 up- and 2333 down-regulated genes while the sensitive biotype had 2335 and 2800 up- and down-regulated genes, respectively. Among them, 974 up- and 1290 down-regulated genes were co-expressed in both biotypes. In the present work, we identified 41 new candidate target genes from five families related to herbicide transport and metabolism: 19 ABC transporters, 10 CYP450s, one glutathione S-transferase (GST), five glycosyltransferases (GT), and six genes related to antioxidant enzyme catalase (CAT), peroxidase (POD), and superoxide dismutase (SOD). The candidate genes may participate in metabolic-based glyphosate resistance via oxidation, conjugation, transport, and degradation, plus antioxidation. One or more of these genes might ‘rescue’ resistant plants from irreversible damage after glyphosate treatment. The 41 target genes we report in the present study may inform further functional genomics studies, including gene editing approaches to elucidate glyphosate-resistance mechanisms in C. bonariensis.

Evolved Glyphosate Resistance in Plants: Biochemical and Genetic Basis of Resistance

2006 ◽  
Vol 20 (2) ◽  
pp. 282-289 ◽  
Author(s):  
Stephen B. Powles ◽  
Christopher Preston
Keyword(s):  
Amino Acid ◽  
Resistance Mechanism ◽  
Nuclear Gene ◽  
Glyphosate Resistance ◽  
The United States ◽  
Resistance Mechanisms ◽  
Italian Ryegrass ◽  
Weed Species ◽  
Epsps Gene ◽  
Rigid Ryegrass

Resistance to the herbicide glyphosate is currently known in at least eight weed species from many countries. Some populations of goosegrass from Malaysia, rigid ryegrass from Australia, and Italian ryegrass from Chile exhibit target site–based resistance to glyphosate through changes at amino acid 106 of the 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) gene. Mutations change amino acid 106 from proline to either serine or threonine, conferring an EPSPS weakly resistant to glyphosate. The moderate level of resistance is sufficient for commercial failure of the herbicide to control these plants in the field. Conversely, a nontarget site resistance mechanism has been documented in glyphosate-resistant populations of horseweed and rigid ryegrass from the United States and Australia, respectively. In these resistant plants, there is reduced translocation of glyphosate to meristematic tissues. Both of these mechanisms are inherited as a single, nuclear gene trait. Although at present only two glyphosate-resistance mechanisms are known, it is likely that other mechanisms will become evident. The already very large and still increasing reliance on glyphosate in many parts of the world will inevitably result in more glyphosate-resistant weeds, placing the sustainability of this precious herbicide resource at risk.

scholarly journals Strategies to manage the evolution of glyphosate resistance in New Zealand

2016 ◽  
Vol 69 ◽  
pp. 252-257 ◽  
Author(s):  
K.C. Harrington ◽  
T.K. James ◽  
M.D. Parker ◽  
H. Ghanizadeh
Keyword(s):  
New Zealand ◽  
Weed Control ◽  
Lolium Perenne ◽  
Perennial Ryegrass ◽  
Lolium Multiflorum ◽  
Resistance Management ◽  
Glyphosate Resistance ◽  
Italian Ryegrass ◽  
Fruit Crops ◽  
Sustainable Farming

The first cases of weeds developing resistance to glyphosate within New Zealand have recently been reported and investigated Both perennial ryegrass (Lolium perenne) and Italian ryegrass (Lolium multiflorum) populations have become resistant to glyphosate in several Marlborough vineyards due to many years of weed control using mainly just glyphosate Glyphosate is currently being used in many situations throughout New Zealand that could easily lead to further resistance developing such as in other perennial fruit crops on roadsides railways amenity areas waste areas fence lines and headlands of crops Following wide consultation as part of a Sustainable Farming Fund project strategies for resistance management in three systems (vineyard and orchards amenity and waste areas and crops and pastures) are suggested Adoption of these strategies will allow glyphosate to continue as a useful herbicide in New Zealand

scholarly journals Non‐target‐site mechanism of glyphosate resistance in Italian ryegrass ( Lolium multiflorum )

2018 ◽  
Vol 18 (3) ◽  
pp. 127-135 ◽  
Author(s):  
Kohei Kurata ◽  
Yuki Niinomi ◽  
Yoshiko Shimono ◽  
Masahiro Miyashita ◽  
Tohru Tominaga
Keyword(s):  
Lolium Multiflorum ◽  
Glyphosate Resistance ◽  
Target Site ◽  
Italian Ryegrass

scholarly journals Confirmation of glyphosate resistance in two species of ryegrass from New Zealand vineyards

2013 ◽  
Vol 66 ◽  
pp. 89-93 ◽  
Author(s):  
H. Ghanizadeh ◽  
K.C. Harrington ◽  
T.K. James ◽  
D.J. Woolley
Keyword(s):  
New Zealand ◽  
Lolium Perenne ◽  
Perennial Ryegrass ◽  
Lolium Multiflorum ◽  
Glyphosate Resistance ◽  
Italian Ryegrass ◽  
Two Populations

Plants were obtained from two populations of Italian ryegrass (Lolium multiflorum) and three populations of perennial ryegrass (Lolium perenne) from different vineyards in Marlborough and Nelson that were suspected of being resistant to glyphosate following many consecutive applications of this herbicide over recent years Each population was multiplied by splitting out tillers and this was also done for plants taken from a population of each species from Manawatu pastures where they had not been exposed to glyphosate application A doseresponse experiment showed that four populations taken from the vineyards were about 10 times as resistant to glyphosate as those plants that had not been previously exposed to the herbicide The experiment was repeated and showed one perennial ryegrass population to have a 30fold level of resistance These are the first confirmed cases of glyphosate resistance within New Zealand

scholarly journals Distribution and Survival of Pseudomonas sp. on Italian Ryegrass and Curly Dock in Georgia

Plant Disease ◽  
2014 ◽  
Vol 98 (5) ◽  
pp. 660-666 ◽  
Author(s):  
Bhabesh Dutta ◽  
Ronald D. Gitaitis ◽  
Theodore M. Webster ◽  
Hunt Sanders ◽  
Samuel Smith ◽  
...  
Keyword(s):  
Lolium Multiflorum ◽  
Italian Ryegrass ◽  
Time Interval ◽  
Bacterial Disease ◽  
Pseudomonas Sp ◽  
Weed Species ◽  
Rumex Crispus ◽  
Growing Seasons ◽  
Onion Seed ◽  
Polymerase Chain

Yellow bud, caused by Pseudomonas sp., is an emerging bacterial disease of onion. A polymerase chain reaction assay based on the coronafacate ligase (cfl) and HrpZ genes was used to detect initial suspected bacteria on weeds. Growth on an agar medium, ability to cause a hypersensitive response in tobacco, pathogenicity on onion, and sequence analysis of 16S ribosomal RNA and cfl genes were used to confirm the identity of Pseudomonas sp. recovered from 10 asymptomatic weed species in the Vidalia onion-growing zone (VOZ) of Georgia. Among the weeds identified as epiphytic hosts for Pseudomonas sp., Italian ryegrass (Lolium multiflorum) and curly dock (Rumex crispus) were prominent because ≥73% of the samples from five sample sites were positive for the bacterium. These weeds are commonly found throughout Georgia and, thus, were selected to assess their role in yellow bud epidemiology. Samples of the two weed species were collected from sites along the perimeter of and within the VOZ (n = 5 sites) during late June, August, and September 2012 and 2013, which represented the time interval between onion growing seasons. Samples (n = 10/weed species/site) were collected and processed for bacterial detection as described above. In June (2012 and 2013), Pseudomonas sp. was detected from Italian ryegrass and curly dock in 100 and 40% of the sample sites, respectively. During the months of August and September (2012), the bacterium was recovered from Italian ryegrass in 60 and 10% of the sample sites, respectively; whereas, in August (2013), Pseudomonas sp. was recovered from 40% of the sample sites. However, the bacterium was not recovered from any of the sites in September (2013). In contrast, during August and September (2012), Pseudomonas sp. was recovered from curly dock in 20 and 80% of the sample sites, respectively. Similarly, in August and September (2013), the bacterium was detected from 40 and 100% of the sample sites, respectively. These data demonstrated that the Pseudomonas sp. responsible for yellow bud can survive as an epiphyte on Italian ryegrass and curly dock between onion crops. Furthermore, using artificially infested onion seed, we demonstrated that Pseudomonas sp. can be transmitted through contaminated seed.

Mechanisms of Resistance to Glyphosate in a Ryegrass (Lolium Multiflorum) Biotype from Chile

Weed Science ◽  
2007 ◽  
Vol 55 (5) ◽  
pp. 435-440 ◽  
Author(s):  
Paola Michitte ◽  
Rafael De Prado ◽  
Nelson Espinoza ◽  
Juan Pedro Ruiz-Santaella ◽  
Christian Gauvrit
Keyword(s):  
Leaf Surface ◽  
Lolium Multiflorum ◽  
Glyphosate Resistance ◽  
Contact Angles ◽  
Italian Ryegrass ◽  
Foliar Uptake ◽  
Mechanisms Of Resistance ◽  
Abaxial Surface ◽  
Abaxial Leaf Surface ◽  
Target Enzyme

Glyphosate behavior was examined in Italian ryegrass plants from Chile that were sensitive (S) and resistant (R) to this herbicide. In order to explain the resistance to glyphosate, contact angles, spray retention, foliar uptake, herbicide translocation, and target enzyme activity were studied. Contact angles of glyphosate solutions at a field concentration were 40° to 45° on the abaxial surface of R leaves as compared to 70° on S. Glyphosate spray retention by R plants was 35% lower than by S plants. Glyphosate uptake by the abaxial leaf surface of R plants was about 40% lower than that of S plants. In addition, in the R plants more glyphosate migrated to the tip of the treated leaves. The target enzyme in R and S plants was sensitive to the herbicide. Based on these and previous results, it is concluded that resistance in this Italian ryegrass biotype results from lower spray retention, lower foliar uptake from the abaxial leaf surface, and altered translocation pattern. The decreases in spray retention and foliar uptake constitute new mechanisms of glyphosate resistance.

scholarly journals Identification of differentially expressed microRNAs under imidacloprid exposure in Sitobion avenae Fabricius

2020 ◽  
Author(s):  
Baizhong Zhang ◽  
Shouping Zhang ◽  
Xu Su ◽  
Lanfen Xie ◽  
Wen-Yang Dong ◽  
...  
Keyword(s):  
Target Genes ◽  
De Novo ◽  
Sitobion Avenae ◽  
Differentially Expressed ◽  
Control Analysis ◽  
Sequencing Technology ◽  
Short Read Sequencing ◽  
Kegg Pathway Analysis ◽  
Candidate Target ◽  
Non Coding Rnas

Abstract Background: MicroRNAs (miRNAs), which are short single-stranded non-coding RNAs, regulate the expression of target genes, especially those involved in the regulation or metabolism of endogenous or xenobiotic compounds. Results: De novo assemblies of the transcriptome of Sitobion avenae Fabricius under control conditions and under imidacloprid treatment were obtained using Illumina short-read sequencing technology. Fifty-seven miRNAs, of which 36 were known and 21 were novel, were identified. Quantitative analysis of miRNA levels showed that 5 miRNAs were significantly up-regulated, and 11 miRNAs were significantly down-regulated in the nymphs of S. avenae treated with imidacloprid in comparison with those of the control. Analysis of the candidate target genes in S. avenae that could be regulated by these miRNAs were also carried out. The functions of the miRNAs, which could potentially regulate target genes that participate in metabolism, regulatory or detoxification pathways in S. avenae, were clarified based on Gene Ontology and KEGG pathway analysis. The effects of the miRNAs api-miR-1000, api-miR-316, and api-miR-iab-4 on susceptibility of S. avenae to imidacloprid was determined. Modulation of the abundances of api-miR-1000, api-miR-316, and api-miR-iab-4 by the addition of the correspondign inhibitors to the artificial diet significantly changed the susceptibility of S. avenae to imidacloprid, which further demonstrated the effect of these miRNAs on the regulation or metabolism of insecticides.Conclusion: The results of this study suggested that miRNAs differentially expressed in response to imidacloprid could play a critical regulatory role in the resistance of S. avenae to imidacloprid.

Glyphosate-Resistant Italian Ryegrass (Lolium multiflorum) in California: Distribution, Response to Glyphosate, and Molecular Evidence for an Altered Target Enzyme

Weed Science ◽  
2008 ◽  
Vol 56 (4) ◽  
pp. 496-502 ◽  
Author(s):  
Marie Jasieniuk ◽  
Riaz Ahmad ◽  
Anna M. Sherwood ◽  
Jeffrey L. Firestone ◽  
Alejandro Perez-Jones ◽  
...  
Keyword(s):  
Shikimic Acid ◽  
Lolium Multiflorum ◽  
Amino Acid Position ◽  
Glyphosate Resistance ◽  
Italian Ryegrass ◽  
Shoot Biomass ◽  
Molecular Evidence ◽  
Missense Mutations ◽  
Coding Region ◽  
Target Enzyme

Selection by herbicides has resulted in widespread evolution of herbicide resistance in agricultural weeds. In California, resistance to glyphosate was first confirmed in rigid ryegrass in 1998. Objectives of this study were to determine the current distribution and level of glyphosate resistance in Italian ryegrass, and to assess whether resistance could be due to an altered target site. Seeds were sampled from 118 populations and seedlings were treated with glyphosate at 866 g ae ha−1. Percentage of survivors ranged from 5 to 95% in 54 populations. All plants from 64 populations died. One susceptible (S) population, four putatively resistant (R) populations, and one S accession from Oregon were used for pot dose–response experiments, shikimic acid analyses, and DNA sequencing. Seedlings were treated with glyphosate at eight rates, ranging from 108 to 13,856 g ae ha−1. Shoot biomass was evaluated 3 wk after treatment and fit to a log-logistic regression equation. On the basis of GR50(herbicide rate required to reduce growth by 50%) values, seedlings from putatively R populations were roughly two to 15 times more resistant to glyphosate than S plants. Shikimic acid accumulation was similar in all plants before glyphosate treatment, but at 4 and 7 DAT, S plants from California and Oregon accumulated approximately two and three times more shikimic acid, respectively, than R plants. Sequencing of a cDNA fragment of the EPSPS coding region revealed two different codons, both of which encode proline at amino acid position 106 in S individuals. In contrast, all R plants sequenced exhibited missense mutations at site 106. Plants from one population revealed a mutation resulting in a proline to serine substitution. Plants from three R populations exhibited a mutation corresponding to replacement of proline with alanine. Our results indicate that glyphosate resistance is widespread in Italian ryegrass populations of California, and that resistance is likely due to an altered target enzyme.

scholarly journals Identification of differentially expressed microRNAs under imidacloprid exposure in Sitobion avenae Fabricius

2019 ◽  
Author(s):  
Baizhong Zhang ◽  
Xu Su ◽  
Lanfen Xie ◽  
Wen-Yang Dong ◽  
Fan-Bin Kong ◽  
...  
Keyword(s):  
Target Genes ◽  
De Novo ◽  
Sitobion Avenae ◽  
Differentially Expressed ◽  
Control Analysis ◽  
Sequencing Technology ◽  
Short Read Sequencing ◽  
Kegg Pathway Analysis ◽  
Candidate Target ◽  
Non Coding Rnas

Abstract Background MicroRNAs (miRNAs), which are short single-stranded non-coding RNAs, regulate the expression of target genes, especially those involved in the regulation or metabolism of endogenous or xenobiotic compounds.Results De novo assemblies of the transcriptome of Sitobion avenae Fabricius under control conditions and under imidacloprid treatment were obtained using Illumina short-read sequencing technology. Fifty-seven miRNAs, of which 36 were known and 21 were novel, were identified. Quantitative analysis of miRNA levels showed that five miRNAs were significantly up-regulated, and 11 miRNAs were significantly down-regulated in the nymphs of S. avenae treated with imidacloprid in comparison with those of the control. Analysis of the candidate target genes in S. avenae that could be regulated by these miRNAs were also carried out. The functions of the miRNAs, which could potentially regulate target genes that participate in metabolism, regulatory or detoxification pathways in S. avenae , were clarified based on Gene Ontology and KEGG pathway analysis. The effects of the miRNAs api-miR-1000, api-miR-316, and api-miR-iab-4 on susceptibility of S. avenae to imidacloprid was determined. Modulation of the abundances of api-miR-1000, api-miR-316, and api-miR-iab-4 by the addition of the correspondign inhibitors to the artificial diet significantly changed the susceptibility of S. avenae to imidacloprid, which further demonstrated the effect of these miRNAs on the regulation or metabolism of insecticides.Conclusion The results of this study suggested that miRNAs differentially expressed in response to imidacloprid could play a critical regulatory role in the resistance of S. avenae to imidacloprid.

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