scholarly journals New HSV-1 Anti-Viral 1′-Homocarbocyclic Nucleoside Analogs with an Optically Active Substituted Bicyclo[2.2.1]Heptane Fragment as a Glycoside Moiety

Molecules ◽  
2019 ◽  
Vol 24 (13) ◽  
pp. 2446 ◽  
Author(s):  
Tănase ◽  
Drăghici ◽  
Hanganu ◽  
Pintilie ◽  
Maganu ◽  
...  
Keyword(s):  
Chlorine Atom ◽  
Yellow Fever ◽  
Nucleoside Analogs ◽  
Optically Active ◽  
Mitsunobu Reaction ◽  
Hydroxyl Group ◽  
Hydroxymethyl Group ◽  
Sugar Moiety ◽  
Pyrimidine Analogs ◽  
Hsv 1

New 1′-homocarbanucleoside analogs with an optically active substituted bicyclo[2.2.1]heptane skeleton as sugar moiety were synthesized. The pyrimidine analogs with uracil, 5-fluorouracil, thymine and cytosine and key intermediate with 6-chloropurine (5) as nucleobases were synthesized by a selective Mitsunobu reaction on the primary hydroxymethyl group in the presence of 5-endo-hydroxyl group. Adenine and 6-substituted adenine homonucleosides were obtained by the substitution of the 6-chlorine atom of the key intermediate 5 with ammonia and selected amines, and 6-methoxy- and 6-ethoxy substituted purine homonucleosides by reaction with the corresponding alkoxides. No derivatives appeared active against entero, yellow fever, chikungunya, and adeno type 1viruses. Two compounds (6j and 6d) had lower IC50 (15 ± 2 and 21 ± 4 µM) and compound 6f had an identical value of IC50 (28 ± 4 µM) to that of acyclovir, suggesting that the bicyclo[2.2.1]heptane skeleton could be further studied to find a candidate for sugar moiety of the nucleosides.

scholarly journals Sensitivity of Monkey B Virus (Cercopithecine herpesvirus 1) to Antiviral Drugs: Role of Thymidine Kinase in Antiviral Activities of Substrate Analogs and Acyclonucleosides

2007 ◽  
Vol 51 (6) ◽  
pp. 2028-2034 ◽  
Author(s):  
Federico Focher ◽  
Andrea Lossani ◽  
Annalisa Verri ◽  
Silvio Spadari ◽  
Andrew Maioli ◽  
...  
Keyword(s):  
Vero Cell ◽  
Thymidine Kinase ◽  
Nucleoside Analogs ◽  
Modified Nucleosides ◽  
Experimental Conditions ◽  
Substrate Analogs ◽  
B Virus ◽  
Antiviral Activities ◽  
Simplex Virus ◽  
Hsv 1

ABSTRACT Herpes B virus (B virus [BV]) is a macaque herpesvirus that is occasionally transmitted to humans where it can cause rapidly ascending encephalitis that is often fatal. To understand the low susceptibility of BV to the acyclonucleosides, we have cloned, expressed, and characterized the BV thymidine kinase (TK), an enzyme that is expected to “activate” nucleoside analogs. This enzyme is similar in sequence and properties to the TK of herpes simplex virus (HSV), i.e., it has a broad substrate range and low enantioselectivity and is sensitive to inhibitors of HSV TKs. The BV enzyme phosphorylates some modified nucleosides and acyclonucleosides and l enantiomers of thymidine and related antiherpetic analogs. However, the potent anti-HSV drugs acyclovir (ACV), ganciclovir (GCV), and 5-bromovinyldeoxyuridine were poorly or not phosphorylated by the BV enzyme under the experimental conditions. The antiviral activities of a number of marketed antiherpes drugs and experimental compounds were compared against BV strains and, for comparison, HSV type 1 (HSV-1) in Vero cell cultures. For most compounds tested, BV was found to be about as sensitive as HSV-1 was. However, BV was less sensitive to ACV and GCV than HSV-1 was. The abilities of thymidine analogs and acyclonucleosides to inhibit replication of BV in Vero cell culture were not always proportional to their substrate properties for BV TK. Our studies characterize BV TK for the first time and suggest new lead compounds, e.g., 5-ethyldeoxyuridine and pencyclovir, which may be superior to ACV or GCV as treatment for this emerging infectious disease.

scholarly journals Synthesis and biotical activity of bacterial cellulose 6-(2-phthalimidoethanesulfonate)

2020 ◽  
Vol 61 (2) ◽  
pp. 29-36
Author(s):  
Zoya P. Belousova ◽  
Keyword(s):  
Bacterial Cellulose ◽  
Side Reaction ◽  
Hydroxyl Group ◽  
Hydroxyl Groups ◽  
Cellulose Derivatives ◽  
Wound Surface ◽  
Reaction Products ◽  
Absorption Bands ◽  
Hydroxymethyl Group ◽  
Antibacterial And Antifungal

Bacterial cellulose obtained by culturing Gluconacetobacter sucrofermentans in HS environment was converted to sulfonate derivatives using methane-, toluene- and 2-phthalimidoethanesulfonic acids in pyridine. When the ratio of the starting reagents is 1 : 1, the modification of bacterial cellulose according to the primary hydroxyl group of glucopyranose fragments is most likely. The formation of 6-substituted bacterial cellulose derivatives was observed in the reaction mixture. The IR spectra of the reaction products contain absorption bands, which are specific for (O–SO2) group in the region 1377-1338 cm−1 (as), 1178-1154 cm−1 (s), fragments of the corresponding sulfonic acids, as well as free hydroxyl groups of glucopyranose in the region 3495-3382 cm−1. Bacterial cellulose 2-phthalimidoethanesulfonate was dissolved in pyridine. After drying with a desiccant in a desiccator, it turned into a dense transparent film of brown color. The increased molecular film allows to explain the side reaction occurring between the oxo group and fragments of one of the chains of modified cellulose and the non-substituted hydroxymethyl group. The IR spectrum of bacterial cellulose 6-(2-phthalimidoethanesulfonate) contains absorption bands in the region 1711 cm−1, which are specific for (Ar–CO–O) group, and absorption bands in the region 1618 cm−1, which prove the presence of (CO–NH) group. In order to impart antibiotic properties to the bacterial cellulose 6-(2-phthalimido-ethanesulfonate) film, it was physically modified with clotrimazole. The obtained experimental data showed that the films subjected to treatment with a 1% solution of clotrimazole have antibacterial and antifungal effects and prevent the growth of pathogenic microbiota on the wound surface. The exit rates of clotrimazole from the bacterial cellulose 6-(2-phthalimidoethanesulfonate) film and from the pure bacterial cellulose film differed, but only slightly. 2-Phthalimidoethanesulfonate bacterial cellulose films can be used to form composites of effective wound covering, since in addition to the unique properties of bacterial cellulose itself (low allergenicity and adhesion to the wound surface, high hygroscopicity) they will have a regenerating effect.

scholarly journals Amino Acid Changes within Conserved Region III of the Herpes Simplex Virus and Human Cytomegalovirus DNA Polymerases Confer Resistance to 4-Oxo-Dihydroquinolines, a Novel Class of Herpesvirus Antiviral Agents

2003 ◽  
Vol 77 (3) ◽  
pp. 1868-1876 ◽  
Author(s):  
Darrell R. Thomsen ◽  
Nancee L. Oien ◽  
Todd A. Hopkins ◽  
Mary L. Knechtel ◽  
Roger J. Brideau ◽  
...  
Keyword(s):  
Amino Acid ◽  
Herpes Simplex ◽  
Dna Polymerase ◽  
Dna Polymerases ◽  
Nucleoside Analogs ◽  
Polymerase Activity ◽  
Conserved Domain ◽  
Domain Iii ◽  
Simplex Virus ◽  
Hsv 1

ABSTRACT The 4-oxo-dihydroquinolines (PNU-182171 and PNU-183792) are nonnucleoside inhibitors of herpesvirus polymerases (R. J. Brideau et al., Antiviral Res. 54:19-28, 2002; N. L. Oien et al., Antimicrob. Agents Chemother. 46:724-730, 2002). In cell culture these compounds inhibit herpes simplex virus type 1 (HSV-1), HSV-2, human cytomegalovirus (HCMV), varicella-zoster virus (VZV), and human herpesvirus 8 (HHV-8) replication. HSV-1 and HSV-2 mutants resistant to these drugs were isolated and the resistance mutation was mapped to the DNA polymerase gene. Drug resistance correlated with a point mutation in conserved domain III that resulted in a V823A change in the HSV-1 or the equivalent amino acid in the HSV-2 DNA polymerase. Resistance of HCMV was also found to correlate with amino acid changes in conserved domain III (V823A+V824L). V823 is conserved in the DNA polymerases of six (HSV-1, HSV-2, HCMV, VZV, Epstein-Barr virus, and HHV-8) of the eight human herpesviruses; the HHV-6 and HHV-7 polymerases contain an alanine at this amino acid. In vitro polymerase assays demonstrated that HSV-1, HSV-2, HCMV, VZV, and HHV-8 polymerases were inhibited by PNU-183792, whereas the HHV-6 polymerase was not. Changing this amino acid from valine to alanine in the HSV-1, HCMV, and HHV-8 polymerases alters the polymerase activity so that it is less sensitive to drug inhibition. In contrast, changing the equivalent amino acid in the HHV-6 polymerase from alanine to valine alters polymerase activity so that PNU-183792 inhibits this enzyme. The HSV-1, HSV-2, and HCMV drug-resistant mutants were not altered in their susceptibilities to nucleoside analogs; in fact, some of the mutants were hypersensitive to several of the drugs. These results support a mechanism where PNU-183792 inhibits herpesviruses by interacting with a binding determinant on the viral DNA polymerase that is less important for the binding of nucleoside analogs and deoxynucleoside triphosphates.

scholarly journals Regioselective and Stereodivergent Synthesis of Enantiomerically Pure Vic-Diamines from Chiral β-Amino Alcohols with 2-Pyridyl and 6-(2,2′-Bipyridyl) Moieties

Molecules ◽  
2020 ◽  
Vol 25 (3) ◽  
pp. 727 ◽  
Author(s):  
Marzena Wosińska-Hrydczuk ◽  
Przemysław J. Boratyński ◽  
Jacek Skarżewski
Keyword(s):  
Ring Opening ◽  
Amino Alcohols ◽  
Ring Closure ◽  
Mitsunobu Reaction ◽  
Hydroxyl Group ◽  
Hydrazoic Acid ◽  
Enantiomerically Pure ◽  
Endocyclic Nitrogen Atom ◽  
Diastereomeric Mixture ◽  
Complete Series

In this report, we describe the synthetic elaboration of the easily available enantiomerically pure β-amino alcohols. Attempted direct substitution of the hydroxyl group by azido-functionality in the Mitsunobu reaction with hydrazoic acid was inefficient or led to a diastereomeric mixture. These outcomes resulted from the participation of aziridines. Intentionally performed internal Mitsunobu reaction of β-amino alcohols gave eight chiral aziridines in 45–82% yield. The structural and configuration identity of products was confirmed by NMR data compared to the DFT calculated GIAO values. For 1,2,3-trisubstituted aziridines slow configurational inversion at the endocyclic nitrogen atom was observed by NMR at room temperature. Moreover, when aziridine was titrated with Zn(OAc)2 under NMR control, only one of two N-epimers directly participated in complexation. The aziridines underwent ring opening with HN3 to form the corresponding azido amines as single regio- and diastereomers in 90–97% yield. Different results were obtained for 1,2-disubstituted and 1,2,3-trisubstituted aziridines. For the later aziridines ring closure and ring opening occurred at different carbon stereocenters, thus yielding products with two inverted configurations, compared to the starting amino alcohol. The 1,2-disubstituted aziridines produced azido amines of the same configuration as the starting β-amino alcohols. To obtain a complete series of diastereomeric vic-diamines, we converted the amino alcohols into cyclic sulfamidates, which reacted with sodium azide in SN2 reaction (25–58% overall yield). The azides obtained either way underwent the Staudinger reduction, giving a series of six new chiral vic-diamines of defined stereochemistries.

scholarly journals Synthesis of phosphoramidate-linked DNA by a modified DNA polymerase

2020 ◽  
Vol 117 (13) ◽  
pp. 7276-7283 ◽  
Author(s):  
Victor S. Lelyveld ◽  
Wen Zhang ◽  
Jack W. Szostak
Keyword(s):  
Dna Polymerase ◽  
Active Site ◽  
Bond Formation ◽  
Genetic Material ◽  
Nucleoside Analogs ◽  
Polymerase Activity ◽  
Chain Elongation ◽  
Hydroxyl Group ◽  
Common Mechanism ◽  
Modified Dna

All known polymerases copy genetic material by catalyzing phosphodiester bond formation. This highly conserved activity proceeds by a common mechanism, such that incorporated nucleoside analogs terminate chain elongation if the resulting primer strand lacks a terminal hydroxyl group. Even conservatively substituted 3′-amino nucleotides generally act as chain terminators, and no enzymatic pathway for their polymerization has yet been found. Although 3′-amino nucleotides can be chemically coupled to yield stable oligonucleotides containing N3′→P5′ phosphoramidate (NP) bonds, no such internucleotide linkages are known to occur in nature. Here, we report that 3′-amino terminated primers are, in fact, slowly extended by the DNA polymerase from B. stearothermophilus in a template-directed manner. When its cofactor is Ca2+ rather than Mg2+, the reaction is fivefold faster, permitting multiple turnover NP bond formation to yield NP-DNA strands from the corresponding 3′-amino-2′,3′-dideoxynucleoside 5′-triphosphates. A single active site mutation further enhances the rate of NP-DNA synthesis by an additional 21-fold. We show that DNA-dependent NP-DNA polymerase activity depends on conserved active site residues and propose a likely mechanism for this activity based on a series of crystal structures of bound complexes. Our results significantly broaden the catalytic scope of polymerase activity and suggest the feasibility of a genetic transition between native nucleic acids and NP-DNA.

Asymmetric reduction of α,β-unsaturated iminium salts with 1,4-dihydronicotinamide sugar pyranosides

1980 ◽  
Vol 58 (4) ◽  
pp. 387-392 ◽  
Author(s):  
Naomichi Baba ◽  
Taketoshi Makino ◽  
Jun'ichi Oda ◽  
Yuzo Inouye
Keyword(s):  
Functional Groups ◽  
Structural Variation ◽  
Asymmetric Reduction ◽  
Enantiomeric Excess ◽  
Optically Active ◽  
Iminium Salts ◽  
Sugar Moiety

3,3,5-Trimethyl-2-cyclohexylidene iminium salts were reduced with 1,4-dihydronicotinamide sugar pyranosides to give optically active 3,3,5-trimethylcyclohexanone in enantiomeric excess ranging over 3–31%. The product stereochemistry changed sensitively with structural variation (including anomers, epimers, and deacetylation) of sugar residues. The reduction by more simplified chiral models, N1-(1′S,2′S)-2′-hydroxy- or acetoxycyclohexyl-1,4-dihydronicotinamide revealed that operation of the functional groups on the sugar moiety is not merely steric in nature for induction of chirality in the product.

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