scholarly journals Polarizable ab initio QM/MM Study of the Reaction Mechanism of N-tert-Butyloxycarbonylation of Aniline in [EMIm][BF4]

Molecules ◽  
2018 ◽  
Vol 23 (11) ◽  
pp. 2830 ◽  
Author(s):  
Erik Vázquez-Montelongo ◽  
José Vázquez-Cervantes ◽  
G. Cisneros
Keyword(s):  
Reaction Mechanism ◽  
Minimum Energy ◽  
Nucleophilic Attack ◽  
Elastic Band ◽  
Imidazolium Cations ◽  
Drug Molecules ◽  
Rate Limiting Step ◽  
Sequential Mechanism ◽  
Rate Limiting

N-t e r t-butoxycarbonylation of amines in solution (water, organic solvents, or ionic liquids) is a common reaction for the preparation of drug molecules. To understand the reaction mechanism and the role of the solvent, quantum mechanical/molecular mechanical simulations using a polarizable multipolar force field with long–range electrostatic corrections were used to optimize the minimum energy paths (MEPs) associated with various possible reaction mechanisms employing the nudged elastic band (NEB) and the quadratic string method (QSM). The calculated reaction energies and energy barriers were compared with the corresponding gas-phase and dichloromethane results. Complementary Electron Localization Function (ELF)/NCI analyses provide insights on the critical structures along the MEP. The calculated results suggest the most likely path involves a sequential mechanism with the rate–limiting step corresponding to the nucleophilic attack of the aniline, followed by proton transfer and the release of CO 2 without the direct involvement of imidazolium cations as catalysts.

scholarly journals Unveiling the Reaction Mechanism of the Das/Chechik/Marek Synthesis of Stereodefined Quaternary Carbon Centers

2021 ◽  
Vol 11 (11) ◽  
pp. 5002
Author(s):  
Pedro J. Silva ◽  
Carlos E. P. Bernardo
Keyword(s):  
Reaction Mechanism ◽  
Grignard Reagent ◽  
Density Functional ◽  
Initial Step ◽  
Nucleophilic Attack ◽  
Carbon Centers ◽  
Rate Limiting Step ◽  
Cu Catalyst ◽  
Rate Limiting ◽  
Zinc Carbenoid

The reaction mechanism of the Cu+-catalyzed introduction of two all-carbon-substituted stereocenters in an ynamide system using a Grignard reagent, a zinc carbenoid, and an aldehyde, was investigated using density-functional theory. In contrast to the formation of an organocopper(I) compound and subsequent carbocupration reaction, previously postulated as the initial step, the reaction proved to instead proceed through an initial complexation of the substrate alkyne bond by the Cu+-catalyst, which primes this bond for reaction with the Grignard reagent. Subsequent addition of the zinc carbenoid then enables the nucleophilic attack on the incoming aldehyde, which is revealed as the rate-limiting step. Our computations have also identified the factors governing the regio- and setereoselectivity of this interesting reaction, and suggest possible paths for its further development

scholarly journals Folding initiation sites and protein folding.

1999 ◽  
Vol 46 (3) ◽  
pp. 487-508 ◽  
Author(s):  
M Dadlez
Keyword(s):  
Protein Folding ◽  
Protein Fragments ◽  
Denatured State ◽  
Local Structures ◽  
Rate Limiting Step ◽  
Structural Preferences ◽  
Low Levels ◽  
Rate Limiting ◽  
Transition State Barrier

The paper discusses the role of local structural preferences of protein segments in the folding of proteins. First a short overview of the local, secondary structures detected in peptides, protein fragments, denatured proteins and early folding intermediates is given. Next the discussion of their role in protein folding is presented based on recent literature and data obtained in our laboratory. In conclusion it is pointed out that, during folding, local structures populated at low levels in denatured state may facilitate the crossing of the folding transition state barrier, and consequently accelerate the rate limiting step in folding. However, the data show that this effect does not follow simple rules.

scholarly journals Understanding the reaction mechanism of Kolbe electrolysis on Pt anodes

2021 ◽  
Author(s):  
Sihang Liu ◽  
Nitish Govindarajan ◽  
Hector Prats ◽  
Karen Chan
Keyword(s):  
Reaction Mechanism ◽  
Potential Range ◽  
Microkinetic Model ◽  
Rate Determining Step ◽  
Rate Limiting Step ◽  
Limiting Step ◽  
Tafel Slopes ◽  
Kolbe Electrolysis ◽  
Kolbe Reaction ◽  
Rate Limiting

Kolbe electrolysis has been proposed an efficient electrooxidation process to synthesize (un)symmetrical dimers from biomass-based carboxylic acids. However, the reaction mechanism of Kolbe electrolysis remains controversial. In this work, we develop a DFT- based microkinetic model to study the reaction mechanism of Kolbe electrolysis of acetic acid (CH3COOH) on both pristine and partially oxidized Pt anodes. We show that the shift in the rate-determining step of oxygen evolution reaction (OER) on Pt(111)@α-PtO2 surface from OH* formation to H2O adsorption gives rise to the large Tafel slopes, i.e., the inflection zones, observed at high anodic potentials in experiments on Pt anodes. The activity passivation as a result of the inflection zone is further exacerbated in the presence of Kolbe species (i.e., CH3COO* and CH3*). Our simulations find the CH3COO* decarboxylation and CH3* dimerization steps determine the activity of Kolbe reaction during inflection zone. In contrast to the Pt(111)@α-PtO2 surface, Pt(111) shows no activity towards Kolbe products as the CH3COO* decarboxylation step is limiting throughout the considered potential range. This work resolves major controversies in the mechanistic analyses of Kolbe electrolysis on Pt anodes: the origin of the inflection zone, and the identity of the rate limiting step.

Adenoviral expression of 15-lipoxygenase-1 in rabbit aortic endothelium: role in arachidonic acid-induced relaxation

2007 ◽  
Vol 292 (2) ◽  
pp. H1033-H1041 ◽  
Author(s):  
Nitin T. Aggarwal ◽  
Blythe B. Holmes ◽  
Lijie Cui ◽  
Helena Viita ◽  
Seppo Yla-Herttuala ◽  
...  
Keyword(s):  
Endothelial Cells ◽  
Arachidonic Acid ◽  
Rabbit Aorta ◽  
Epoxyeicosatrienoic Acid ◽  
Aortic Endothelial Cells ◽  
Aortic Endothelium ◽  
Rate Limiting Step ◽  
Immunohistochemical Studies ◽  
Rate Limiting

Endothelium-dependent vasorelaxation of the rabbit aorta is mediated by either nitric oxide (NO) or arachidonic acid (AA) metabolites from cyclooxygenase (COX) and 15-lipoxygenase (15-LO) pathways. 15-LO-1 metabolites of AA, 11,12,15-trihydroxyeicosatrienoic acid (THETA), and 15-hydroxy-11,12-epoxyeicosatrienoic acid (HEETA) cause concentration-dependent relaxation. We tested the hypothesis that in the 15-LO pathway of AA metabolism, 15-LO-1 is sufficient and is the rate-limiting step in inducing relaxations in rabbit aorta. Aorta and rabbit aortic endothelial cells were treated with adenoviruses containing human 15-LO-1 cDNA (Ad-15-LO-1) or β-galactosidase (Ad-β-Gal). Ad-15-LO-1-transduction increased the expression of a 75-kDa protein corresponding to 15-LO-1, detected by immunoblotting with an anti-human15-LO-1 antibody, and increased the production of HEETA and THETA from [14C]AA. Immunohistochemical studies on Ad-15-LO-1-transduced rabbit aorta showed the presence of 15-LO-1 in endothelial cells. Ad-15-LO-1-treated aortic rings showed enhanced relaxation to AA (max 31.7 ± 3.2%) compared with Ad-β-Gal-treated (max 12.7 ± 3.2%) or control nontreated rings (max 13.1 ± 1.6%) ( P < 0.01). The relaxations in Ad-15-LO-1-treated aorta were blocked by the 15-LO inhibitor cinnamyl-3,4-dihydroxy-a-cyanocinnamate. Overexpression of 15-LO-1 in the rabbit aortic endothelium is sufficient to increase the production of the vasodilatory HEETA and THETA and enhance the relaxations to AA. This confirms the role of HEETA and THETA as endothelium-derived relaxing factors.

scholarly journals Kinetic modelling of hydrogen transfer deoxygenation of a prototypical fatty acid over a bimetallic Pd60Cu40 catalyst: an investigation of the surface reaction mechanism and rate limiting step

2020 ◽  
Vol 5 (9) ◽  
pp. 1682-1693
Author(s):  
Kin Wai Cheah ◽  
Suzana Yusup ◽  
Martin J. Taylor ◽  
Bing Shen How ◽  
Amin Osatiashtiani ◽  
...  
Keyword(s):  
Oleic Acid ◽  
Reaction Mechanism ◽  
Hydrogen Transfer ◽  
Surface Reaction ◽  
Kinetic Modelling ◽  
Rate Limiting Step ◽  
Limiting Step ◽  
Cu Catalyst ◽  
P Application ◽  
Rate Limiting

Application of tetralin as a source of hydrogen for catalytic conversion of oleic acid to diesel-like hydrocarbons using a bimetallic Pd–Cu catalyst.

scholarly journals Unveiling the Rate-Limiting Step of the Bc1 Complex Reaction Mechanism

2019 ◽  
Vol 116 (3) ◽  
pp. 419a
Author(s):  
Angela M. Barragan ◽  
Alexander V. Soudackov ◽  
Zaida Luthey-Schulten ◽  
Klaus Schulten ◽  
Sharon Hammes-Schiffer ◽  
...  
Keyword(s):  
Reaction Mechanism ◽  
Complex Reaction ◽  
Bc1 Complex ◽  
Rate Limiting Step ◽  
Limiting Step ◽  
Rate Limiting

scholarly journals Mechanism of the 2,3-diphosphoglycerate-dependent phosphoglycerate mutase from rabbit muscle

1972 ◽  
Vol 130 (2) ◽  
pp. 397-410 ◽  
Author(s):  
H. G. Britton ◽  
J. B. Clarke
Keyword(s):  
Chemical Equilibrium ◽  
Phosphoglycerate Mutase ◽  
Rabbit Muscle ◽  
Kinetic Measurements ◽  
Rate Limiting Step ◽  
Ping Pong ◽  
Sequential Mechanism ◽  
Rate Limiting ◽  
Kinetics Of ◽  
Intramolecular Transfer

1. The properties and kinetics of the 2,3-diphosphoglycerate-dependent phosphoglycerate mutases are discussed. There are at least three possible mechanisms for the reaction: (i) a phosphoenzyme (Ping Pong) mechanism; (ii) an intermolecular transfer of phosphate from 2,3-diphosphoglycerate to the substrates (sequential mechanism); (iii) an intramolecular transfer of phosphate. It is concluded that these mechanisms cannot be distinguished by conventional kinetic measurements. 2. The fluxes for the different mechanisms are calculated and it is shown that it should be possible to distinguish between the mechanisms by appropriate induced-transport tests and by comparing the fluxes of 32P- and 14C-labelled substrates at chemical equilibrium. 3. With 14C-labelled substrates no induced transport was found over a wide concentration range, and with 32P-labelled substrates co-transport occurred that was independent of concentration over a twofold range. 14C-labelled substrates exchange at twice the rate of 32P-labelled substrates at chemical equilibrium. The results were completely in accord with a phosphoenzyme mechanism and indicated a rate constant for the isomerization of the phosphoenzyme of not less than 4×106s−1. The intramolecular transfer of phosphate (and intermolecular transfer between two or more molecules of substrate) were completely excluded. The intermolecular transfer of phosphate from 2,3-diphosphoglycerate would have been compatible with the results only if the Km for 2-phosphoglycerate had been over 7.5-fold smaller than the observed value and if an isomerization of the enzyme-2,3-diphosphoglycerate complex had been the major rate-limiting step in the reaction. 4. The very rapid isomerization of the phosphoenzyme that the experiments demonstrate suggests a mechanism that does not involve a formal isomerization. According to this new scheme the enzyme is closely related mechanistically and perhaps evolutionarily to a 2,3-diphosphoglycerate diphosphatase.

Mechanism of the Ullmann condensation

1981 ◽  
Vol 46 (1) ◽  
pp. 92-100 ◽  
Author(s):  
Zdeněk Vrba
Keyword(s):  
Reaction Mechanism ◽  
Bifunctional Catalyst ◽  
Sulphonic Acid ◽  
Condensation Rate ◽  
Kinetic Relation ◽  
Bromide Anion ◽  
Reaction Intermediate ◽  
Rate Limiting Step ◽  
Limiting Step ◽  
Rate Limiting

It has been found that the condensation rate of 1-amino-4-bromoanthraquinone-2-sulphonic acid (I) with 1,3-diaminobenzene-4-sulphonic acid (II) giving 1-amino-4-(3'-amino-4'-sulphoanilino)anthraquinone-2-sulphonic acid (III) in media of NaHCO3-CO2 and NaHCO3-Na2CO3 with catalysis by CuI obeys the kinetic relation *u = k[I][II][Cu+][CO2-3], being controlled by the kinetic relation *u = k[I][II][Cu+]2[PO3-4] in media of NaH2PO4-Na2HPO4 buffers. The suggested reaction mechanism presumes formation of a bifunctional catalyst CuCO-3 or Cu2PO-4 which splits off the proton and bromide anion from the reaction intermediate in the rate-limiting step.

Daily prolactin pulse inhibits the corpus luteum during lactational quiescence in the marsupial, Macropus eugenii

2013 ◽  
Vol 25 (2) ◽  
pp. 456 ◽  
Author(s):  
L. A. Hinds ◽  
C. H. Tyndale-Biscoe
Keyword(s):  
Corpus Luteum ◽  
Tammar Wallaby ◽  
Marked Contrast ◽  
Previous Conclusion ◽  
Macropus Eugenii ◽  
Rate Limiting Step ◽  
Limiting Step ◽  
Progesterone Synthesis ◽  
Rate Limiting

The corpus luteum (CL) of the tammar wallaby is inhibited by prolactin during lactation and seasonal quiescence. In seasonal quiescence a daily transient pulse of prolactin (PRL) of less than 2 h duration is sufficient to maintain inhibition. We investigated whether the same inhibition applies in lactation and, if so, how. Our results show that inhibition of the CL during lactation is maintained by a transient pulse of prolactin once a day. They also show that the minimum time without a PRL pulse for the CL to escape inhibition is more than 48 h and less than 72 h. Nevertheless, some animals had a longer refractory period than 72 h, which was reflected in a longer interval to the progesterone peak and birth. These results support the previous conclusion that PRL exercises its effect on a rate-limiting step in progesterone synthesis and secretion rate from the CL, which precedes any increase in its mass. Therefore, we conclude that the role of PRL is to act as a luteostatic agent, an effect that is in marked contrast to its luteotrophic effect in many eutherian species, including rodents.

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