scholarly journals Characterisation of Phage Susceptibility Variation in Salmonellaenterica Serovar Typhimurium DT104 and DT104b

2021 ◽  
Vol 9 (4) ◽  
pp. 865
Author(s):  
Manal Mohammed ◽  
Beata Orzechowska
Keyword(s):  
Salmonella Typhimurium ◽  
Multidrug Resistant ◽  
Resistance Mechanisms ◽  
Phage Typing ◽  
Mortality And Morbidity ◽  
Typing Scheme ◽  
Phage Types ◽  
Serovar Typhimurium ◽  
Associated Proteins ◽  
Susceptibility Profiles

The surge in mortality and morbidity rates caused by multidrug-resistant (MDR) bacteria prompted a renewal of interest in bacteriophages (phages) as clinical therapeutics and natural biocontrol agents. Nevertheless, bacteria and phages are continually under the pressure of the evolutionary phage–host arms race for survival, which is mediated by co-evolving resistance mechanisms. In Anderson phage typing scheme of Salmonella Typhimurium, the epidemiologically related definitive phage types, DT104 and DT104b, display significantly different phage susceptibility profiles. This study aimed to characterise phage resistance mechanisms and genomic differences that may be responsible for the divergent phage reaction patterns in S. Typhimurium DT104 and DT104b using whole genome sequencing (WGS). The analysis of intact prophages, restriction–modification systems (RMS), plasmids and clustered regularly interspaced short palindromic repeats (CRISPRs), as well as CRISPR-associated proteins, revealed no unique genetic determinants that might explain the variation in phage susceptibility among the two phage types. Moreover, analysis of genes coding for potential phage receptors revealed no differences among DT104 and DT104b strains. However, the findings propose the need for experimental assessment of phage-specific receptors on the bacterial cell surface and analysis of bacterial transcriptome using RNA sequencing which will explain the differences in bacterial susceptibility to phages. Using Anderson phage typing scheme of Salmonella Typhimurium for the study of bacteria-phage interaction will help improving our understanding of host–phage interactions which will ultimately lead to the development of phage-based technologies, enabling effective infection control.

scholarly journals Molecular epidemiology and diversity ofSalmonellaserovar Typhimurium in pigs using phenotypic and genotypic approaches

2005 ◽  
Vol 134 (1) ◽  
pp. 187-198 ◽  
Author(s):  
W. A. GEBREYES ◽  
C. ALTIER ◽  
S. THAKUR
Keyword(s):  
Production Systems ◽  
Phage Type ◽  
Geographical Area ◽  
Multidrug Resistant ◽  
Resistance Pattern ◽  
Public Health Importance ◽  
Pig Production ◽  
Phage Types ◽  
Serovar Typhimurium ◽  
Discriminatory Index

SUMMARYFor epidemiological investigations of the most common and non-host-adaptedSalmonellaserotypes, such as Typhimurium, highly discriminatory approaches are essential. In the present study, we evaluated three genotyping methods; amplified fragment length polymorphism (AFLP), pulsed-field gel electrophoresis (PFGE) and repetitive palindromic extragenic–PCR (Rep–PCR) using 40 isolates. AFLP showed the highest discriminatory index (0·939), resolution and throughput. To determine clonality ofSalmonellaTyphimurium isolates and epidemiological relatedness in different commercial pig production units, we employed AFLP in combination with antimicrobial resistance pattern and phage typing.Salmonellaserovar Typhimurium isolates (n=196) obtained from a longitudinal study of 18 pig farms over a 3-year period were studied. Using this approach, 16 distinct clonal types were identified. We found two common multidrug- resistant patterns including AmCmStSuTe and AmKmStSuTe. Two commonly multidrug- resistant phage types that are of known public health importance, DT104 and DT193, were also common. AFLP differentiated distinct clones within DT104, a phage type previously reported to be clonal. Fourteen of the clonal types were unique to one of the two production systems, showing diversity between independent commercial pig production systems located in the same geographical area. Clonal types obtained from nursery farms and corresponding finishing units were, however, similar.

scholarly journals Characterization of Salmonella enterica Serovar Typhimurium from Marine Environments in Coastal Waters of Galicia (Spain)

2004 ◽  
Vol 70 (7) ◽  
pp. 4030-4034 ◽  
Author(s):  
Jaime Martinez-Urtaza ◽  
Ernesto Liebana ◽  
Lourdes Garcia-Migura ◽  
Pelayo Perez-Piñeiro ◽  
Montserrat Saco
Keyword(s):  
Coastal Waters ◽  
Salmonella Enterica ◽  
Multidrug Resistant ◽  
Marine Environments ◽  
Pfge Analysis ◽  
Phage Types ◽  
Plasmid Analysis ◽  
Routine Surveillance ◽  
Serovar Typhimurium ◽  
Plasmid Profiling

ABSTRACT Twenty-three Salmonella enterica serovar Typhimurium isolates from marine environments were characterized by phage typing, pulsed-field gel electrophoresis (PFGE) analysis, plasmid analysis, and antibiotic resistance, and the distribution of the different types in the coastal waters were subsequently analyzed. Five phage types were identified among the isolates (PT41, PT135, PT99, DT104, and DT193). PT135 isolates were exclusively detected during the winter months from 1998 to 2000, whereas DT104 and PT41 isolates were detected exclusively in the summer months from 2000 to 2002. XbaI PFGE analysis revealed 9 PFGE types, and plasmid profiling identified 8 plasmid types (with 1 to 6 plasmids) among the isolates. Only three isolates presented multidrug resistance to antibiotics. Two DT104 isolates were resistant to 8 and 7 antibiotics (profiles ACCeFNaSSuT and ACeFNeSSuT), whereas a PT193 isolate presented resistance to 6 antibiotics (profile ACFSSu). In addition, four PT41 isolates were resistant to a single antibiotic. The detection of multidrug-resistant phage types DT104 and DT193 in shellfish emphasizes the importance of monitoring the presence of Salmonella in routine surveillance of live bivalve molluscs.

scholarly journals Bacteriophage-typing designations of Salmonella typhimurium

1977 ◽  
Vol 78 (2) ◽  
pp. 297-300 ◽  
Author(s):  
E. S. Anderson ◽  
Linda R. Ward ◽  
Maureen J. de Saxe ◽  
J. D. H. de Sa
Keyword(s):  
Salmonella Typhimurium ◽  
Phage Typing ◽  
Typing Scheme ◽  
Bacteriophage Typing ◽  
Original Number

SUMMARYThe phage-typing scheme of Callow (1959) has been extended. The original number of types was 34; this has now risen to 207. Tables are presented which show the provisional type designations and the definitive designations now being introduced.

scholarly journals Diversity of Phage Types among Archived Cultures of the Demerec Collection of Salmonella enterica serovar Typhimurium Strains

2004 ◽  
Vol 70 (2) ◽  
pp. 664-669 ◽  
Author(s):  
Wolfgang Rabsch ◽  
R. Allen Helm ◽  
Abraham Eisenstark
Keyword(s):  
Salmonella Enterica ◽  
Salmonella Enterica Serovar Typhimurium ◽  
Phage Type ◽  
Phage Typing ◽  
Phage Types ◽  
Receptor Sites ◽  
Serovar Typhimurium ◽  
Phage Receptor ◽  
The Stability ◽  
Restriction Modification

ABSTRACT The existence of several thousand Salmonella enterica serovar Typhimurium LT2 and LT7 cultures originally collected by M. Demerec and sealed in agar stab vials for 33 to 46 years is a resource for evolutionary and mutational studies. Cultures from 74 of these vials, descendants of cells sealed and stored in nutrient agar stabs several decades ago, were phage typed by the Callow and Felix, Lilleengen, and Anderson systems. Among 53 LT2 archived strains, 16 had the same phage type as the nonarchival sequenced LT2 strain. The other 37 archived cultures differed in phage typing pattern from the sequenced strain. These 37 strains were divided into 10 different phage types. Among the 19 LT7 strains, only one was similar to the parent by phage typing, while 18 were different. These 18 strains fell into eight different phage types. The typing systems were developed to track epidemics from source to consumer, as well as geographic spread. The value of phage typing is dependent upon the stability of the phage type of any given strain throughout the course of the investigation. Thus, the variation over time observed in these archived cultures is particularly surprising. Possible mechanisms for such striking diversity may include loss of prophages, prophage mosaics as a result of recombination events, changes in phage receptor sites on the bacterial cell surface, or mutations in restriction-modification systems.

scholarly journals Antibiotic Resistance Genes and Salmonella Genomic Island 1 in Salmonella enterica Serovar Typhimurium Isolated in Italy

2002 ◽  
Vol 46 (9) ◽  
pp. 2821-2828 ◽  
Author(s):  
Alessandra Carattoli ◽  
Emma Filetici ◽  
Laura Villa ◽  
Anna Maria Dionisi ◽  
Antonia Ricci ◽  
...  
Keyword(s):  
Antibiotic Resistance ◽  
Resistance Genes ◽  
Salmonella Enterica ◽  
Genomic Island ◽  
Antibiotic Resistance Genes ◽  
Tetracycline Resistance ◽  
Gene Cassette ◽  
Multidrug Resistant ◽  
Phage Types ◽  
Serovar Typhimurium

ABSTRACT Fifty-four epidemiologically unrelated multidrug-resistant Salmonella enterica serovar Typhimurium isolates, collected between 1992 and 2000 in Italy, were analyzed for the presence of integrons. Strains were also tested for Salmonella genomic island 1 (SGI1), carrying antibiotic resistance genes in DT104 strains. A complete SGI1 was found in the majority of the DT104 strains. Two DT104 strains, showing resistance to streptomycin-spectinomycin and sulfonamides, carried a partially deleted SGI1 lacking the flost , tetR, and tetA genes, conferring chloramphenicol-florfenicol and tetracycline resistance, and the integron harboring the pse-1 gene cassette, conferring ampicillin resistance. The presence of SGI1 was also observed in serovar Typhimurium strains belonging to other phage types, suggesting either the potential mobility of this genomic island or changes in the phage-related phenotype of DT104 strains.

Characterization of Nalidixic Acid–Resistant and Fluoroquinolone-Reduced Susceptible Salmonella Typhimurium in Swine

2011 ◽  
Vol 74 (4) ◽  
pp. 610-615 ◽  
Author(s):  
K. E. LEE ◽  
J. H. JUNG ◽  
B. Y. JUNG ◽  
Y. H. PARK ◽  
Y. H. LEE
Keyword(s):  
Salmonella Typhimurium ◽  
Nalidixic Acid ◽  
Antimicrobial Agents ◽  
Salmonella Enterica Serovar Typhimurium ◽  
Multidrug Resistant ◽  
Quinolone Resistance ◽  
Specific Primers ◽  
Serovar Typhimurium ◽  
Clonal Spread

From 2001 to 2008, a total of 27 isolates of Salmonella enterica serovar Typhimurium were obtained from 930 swine. All 27 isolates were resistant to streptomycin and tetracycline. Seventeen isolates were multidrug resistant to more than three antimicrobial agents. Seven of these multidrug-resistant isolates were pentaresistant to ampicillin, chloramphenicol, streptomycin, tetracycline, and nalidixic acid. Among 27 isolates, 14 isolates (51.8%) were nalidixic acid resistant (MIC, ≥128 μg/ml) and had reduced susceptibility to various quinolones (MIC, 0.125 to 2 μg/ml). When quinolone resistance–determining regions in the gyrA and gyrB genes of these isolates were sequenced, 13 isolates had Asp87→Tyr mutations and 1 isolate had Asp87→Gly mutation in the quinolone resistance–determining region of gyrA, whereas no mutation was found in gyrB. Genes for qnrA, qnrB, and qnrS were not detected by PCR with specific primers. Pulsed-field gel electrophoresis of genomic DNA digested with XbaI showed two patterns suggesting a clonal spread of Salmonella Typhimurium in swine in Korea.

Multidrug-Resistant Salmonella Typhimurium DT104 in Poultry

2000 ◽  
Vol 63 (2) ◽  
pp. 155-161 ◽  
Author(s):  
G. RAJASHEKARA ◽  
E. HAVERLY ◽  
D. A. HALVORSON ◽  
K. E. FERRIS ◽  
D. C. LAUER ◽  
...  
Keyword(s):  
Antibiotic Resistance ◽  
Salmonella Typhimurium ◽  
Phage Type ◽  
Multidrug Resistant ◽  
Resistance Pattern ◽  
Feed Ingredients ◽  
Antibiotic Resistance Pattern ◽  
Phage Types ◽  
Polymerase Chain ◽  
Geographical Locations

Salmonella Typhimurium isolates from feed ingredients or poultry sources isolated during 1995 to 1997 from different geographical locations within Minnesota were examined for the presence of Salmonella Typhimurium definitive type 104 (DT104). Antibiotic susceptibility studies indicated that 15 of 50 isolates of Salmonella Typhimurium had an antibiotic resistance pattern (ampicillin, chloramphenicol, streptomycin, sulfonamides, and tetracycline) that is usually observed with multidrug-resistant Salmonella Typhimurium DT104. Of the 15 isolates showing the antibiotic resistance pattern, 8 isolates were phage type 104, 3 isolates were typed as phage type 104 complex, and the remaining 4 isolates belonged to phage types 193, 81, and 126. DT104 was recovered from both feed ingredients and poultry samples. Of the seven feed ingredient–associated Salmonella Typhimurium isolates, four were DT104, whereas only 7 of 43 poultry-associated Salmonella Typhimurium isolates were DT104. A repetitive sequence–based polymerase chain reaction (rep-PCR) of 50 isolates of Salmonella Typhimurium representing 13 phage types identified seven distinct fingerprint profiles. No correlation between phage type and rep-PCR type was noticed. Eleven Salmonella Typhimurium isolates belonging to DT104 and its complex were grouped into two closely related rep-PCR types.

scholarly journals Pulsed-Field Gel Electrophoresis Supports the Presence of Host-Adapted Salmonella enterica subsp. enterica Serovar Typhimurium Strains in the British Garden Bird Population

2011 ◽  
Vol 77 (22) ◽  
pp. 8139-8144 ◽  
Author(s):  
Becki Lawson ◽  
Laura A. Hughes ◽  
Tansy Peters ◽  
Elizabeth de Pinna ◽  
Shinto K. John ◽  
...  
Keyword(s):  
Gel Electrophoresis ◽  
Salmonella Enterica ◽  
Phage Type ◽  
Pulsed Field Gel Electrophoresis ◽  
Phage Typing ◽  
Molecular Technique ◽  
Content Type ◽  
Pulsed Field ◽  
Phage Types ◽  
Serovar Typhimurium

ABSTRACTSalmonellosis is a frequently diagnosed infectious disease of passerine birds in garden habitats within Great Britain with potential implications for human and domestic animal health. Postmortem examinations were performed on 1,477 garden bird carcasses of circa 50 species from England and Wales, 1999 to 2007 inclusive. Salmonellosis was confirmed in 263 adult birds of 10 passerine species in this 11-year longitudinal study. A subset of 124 fully biotypedSalmonella entericasubsp.entericaserovar Typhimurium isolates was examined using pulsed-field gel electrophoresis to investigate the hypothesis that these strains are host adapted and to determine whether this molecular technique offers greater resolution in understanding the epidemiology ofSalmonellaTyphimurium infection than phage typing alone. For the two most common phage types, definitive type (DT) 40 and DT56v, which together accounted for 97% (120/124) of isolates, pulsed-field gel electrophoresis groupings closely correlated with phage type with remarkably few exceptions. A high degree of genetic similarity (>90%) was observed within and between the two most common pulsed-field gel electrophoresis groups. No clustering or variation was found in the pulsed-field gel electrophoresis groupings by bird species, year, or geographical region beyond that revealed by phage typing. These findings support the hypothesis that there are currently two host-adaptedSalmonellaphage types,S. Typhimurium DT40 and DT56v, circulating widely in British garden birds and that the reservoir of infection is maintained within wild bird populations. Large-scale multilocus sequence typing studies are required to further investigate the epidemiology of this infection.

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