scholarly journals Aided Phytoremediation to Clean Up Dioxins/Furans-Aged Contaminated Soil: correlation between microbial communities and pollutant dissipation

2019 ◽  
Vol 7 (11) ◽  
pp. 523 ◽  
Author(s):  
Meglouli ◽  
Fontaine ◽  
Verdin ◽  
Magnin-Robert ◽  
Tisserant ◽  
...  
Keyword(s):  
Contaminated Soil ◽  
Contaminated Soils ◽  
Arbuscular Mycorrhizal ◽  
Illumina Miseq ◽  
Amplicon Sequencing ◽  
Soil Microbial ◽  
Degrading Bacterium ◽  
Dioxins And Furans ◽  
Microbial Enzyme ◽  
Sphingomonas Wittichii

To restore and clean up polluted soils, aided phytoremediation was found to be an effective, eco-friendly, and feasible approach in the case of many organic pollutants. However, little is known about its potential efficiency regarding polychlorinated dibenzo-p-dioxins and furans-contaminated soils. Thus, phytoremediation of aged dioxins/furans-contaminated soil was carried out through microcosm experiments vegetated with alfalfa combined with different amendments: an arbuscular mycorrhizal fungal inoculum (Funneliformis mosseae), a biosurfactant (rhamnolipids), a dioxins/furans degrading-bacterium (Sphingomonas wittichii RW1), and native microbiota. The total dioxins/furans dissipation was estimated to 23%, which corresponds to 48 ng.kg−1 of soil, after six months of culture in the vegetated soil combined with the four amendments compared to the non-vegetated soil. Our findings showed that the dioxins/furans dissipation resulted from the stimulation of soil microbial enzyme activities (fluorescein diacetate hydrolase and dehydrogenase) and the increase of bacterial abundance, richness, and diversity, as well as fungal diversity. Amplicon sequencing using Illumina MiSeq analysis led to identification of several bacterial (Bacillaceae, Sphingomonadaceae) and fungal (Chaetomium) groups known to be involved in dioxins/furans degradation. Furthermore, concomitant cytotoxicity and dioxins/furans concentration decreases were pointed out in the phytoremediated soil. The current study demonstrated the usefulness of combining different types of amendments to improve phytoremediation efficacy of aged dioxins/furans-contaminated soils.

Mycorrhizal inoculation and application of Fe correction in the soil for ameliorating grapevine performance in a copper-contaminated soil

2021 ◽  
Author(s):  
Amaia Nogales ◽  
Erika S. Santos ◽  
Gonçalo Victorino ◽  
Wanda Viegas ◽  
Maria Manuela Abreu
Keyword(s):  
Soil Contamination ◽  
Contaminated Soil ◽  
Contaminated Soils ◽  
Mycorrhizal Fungi ◽  
Root Biomass ◽  
Arbuscular Mycorrhizal ◽  
Nutrient Contents ◽  
Beneficial Effects ◽  
Continuous Application ◽  
Mycorrhizal Inoculation

<p>Copper-based fungicides are commonly applied in vineyards to control fungal diseases that can severely affect grapevine productivity. Continuous application of this type of fungicides contributes to Cu accumulation in surface horizons of the soil, which can generate toxicity problems in plants, regardless of being an essential nutrient. Several strategies have been proposed to immobilize or counteract the effect of soil contaminants, such as plant inoculation with arbuscular mycorrhizal fungi (AMF). However, depending on the element concentration, this may not be sufficient to avoid its excessive accumulation in belowground and/or aboveground organs. Since Fe is known to have an antagonistic interaction with Cu in plants, Fe application, as an amendment, in vineyard soils, could be a good strategy to avoid excessive Cu uptake by grapevines growing in Cu-contaminated soils. However, little information is available on the combined effects of both strategies.</p><p>In order to reveal the possible beneficial effects of plant mycorrhization and Fe application in Cu-contaminated soils on grapevine growth and nutrition, a mesocosm experiment was established under controlled conditions. Two-year-old plants, previously inoculated or not with two different AMF, were grown in pots filled with 6.5 kg of an Arenosol collected from a wine-growing region. These plants were subjected to three soil treatments: 1) soil contamination with Cu, where the grapevines were watered with a solution containing 5.89 mg/L CuSO<sub>4</sub> to ensure that the soil in each container reached 300 mg Cu/kg; 2) soil contamination with Cu + Fe addition, where the plants were watered with a solution that contained the same amount of CuSO<sub>4</sub> plus 0.38 mg/L of FeNaEDTA·3H<sub>2</sub>O to achieve 100 mg of Fe/kg soil; and 3) non-contaminated soil watered with deionized water. Four months later, at the end of the growing season, plant vegetative growth as well as leaf and root nutrient contents were analyzed.</p><p>Grapevines inoculated with AMF demonstrated a good level of tolerance to high Cu concentrations in soil, as they presented significantly higher root biomass than non-inoculated plants and Cu was mainly accumulated in the roots avoiding its translocation to the aerial part. However, when the Cu-contaminated soil was amended with Fe, a significant decrease was observed in root biomass in all mycorrhizal inoculation treatments and Cu was accumulated in grapevine leaves. Contrastingly, Fe application helped to avoid the excessive increase of Mn concentrations in leaf and roots that is commonly induced in Cu contaminated soils, which can be detrimental for grapevine growth.</p><p>These results demonstrated that mycorrhizal inoculation is a suitable strategy to promote grapevine growth in Cu-contaminated soils. However, special attention needs to be taken when applying amendments to correct Cu contamination, as the mycorrhizal status of plants may alter the expected outcome.</p><p> </p><div> <div> </div> </div>

scholarly journals Inoculation with Rhizophagus irregularis Does Not Alter Arbuscular Mycorrhizal Fungal Community Structure within the Roots of Corn, Wheat, and Soybean Crops

2020 ◽  
Vol 8 (1) ◽  
pp. 83 ◽  
Author(s):  
Sébastien Renaut ◽  
Rachid Daoud ◽  
Jacynthe Masse ◽  
Agathe Vialle ◽  
Mohamed Hijri
Keyword(s):  
Community Composition ◽  
Arbuscular Mycorrhizal ◽  
Illumina Miseq ◽  
Amplicon Sequencing ◽  
Soil Samples ◽  
Rhizophagus Irregularis ◽  
Community Diversity ◽  
Reference Sequence ◽  
Growth Stages ◽  
Arbuscular Mycorrhizal Fungal

Little is known about establishment success of the arbuscular mycorrhizal fungal (AMF) inocula and their effects on a soil-indigenous community of AMF. In this study, we assessed the effect of introducing Rhizophagus irregularis DAOM-197198 in soil under field condition on the community composition of indigenous AMF in the roots of corn (Zea mays), soybean (Glycine max), and wheat (Triticum aestivum). Three field trials were conducted with inoculated and non-inoculated plots. Four to ten roots and their rhizosphere soil samples of two growth stages for corn and wheat, and one growing stage of soybean, were collected, totalling 122 root and soil samples. Root colonization was measured microscopically, and the fungal communities were determined by paired-end Illumina MiSeq amplicon sequencing using 18S rDNA marker. After quality trimming and merging of paired ends, 6.7 million sequences could be assigned to 414 different operational taxonomic units. These could be assigned to 68 virtual taxa (VT) using the AMF reference sequence database MaarjAM. The most abundant VT corresponded to R. irregularis. The inoculation treatment did not influence the presence of R. irregularis, or AMF community diversity in roots. This seems to indicate that inoculation with R. irregularis DAOM-197198 does not change the indigenous AMF community composition, probably because it is already present in high abundance naturally.

scholarly journals Clary Sage Cultivation and Mycorrhizal Inoculation Influence the Rhizosphere Fungal Community of an Aged Trace-Element Polluted Soil

2021 ◽  
Vol 9 (6) ◽  
pp. 1333
Author(s):  
Robin Raveau ◽  
Anissa Lounès-Hadj Sahraoui ◽  
Mohamed Hijri ◽  
Joël Fontaine
Keyword(s):  
Trace Element ◽  
Community Composition ◽  
Mycorrhizal Fungi ◽  
Arbuscular Mycorrhizal ◽  
Illumina Miseq ◽  
Amplicon Sequencing ◽  
Fungal Communities ◽  
Rhizospheric Soil ◽  
Lead Smelter ◽  
Amf Communities

Soil fungal communities play a central role in natural systems and agroecosystems. As such, they have attracted significant research interest. However, the fungal microbiota of aromatic plants, such as clary sage (Salvia sclarea L.), remain unexplored. This is especially the case in trace element (TE)-polluted conditions and within the framework of phytomanagement approaches. The presence of high concentrations of TEs in soils can negatively affect not only microbial diversity and community composition but also plant establishment and growth. Hence, the objective of this study is to investigate the soil fungal and arbuscular mycorrhizal fungi (AMF) community composition and their changes over time in TE-polluted soils in the vicinity of a former lead smelter and under the cultivation of clary sage. We used Illumina MiSeq amplicon sequencing to evaluate the effects of in situ clary sage cultivation over two successive years, combined or not with exogenous AMF inoculation, on the rhizospheric soil and root fungal communities. We obtained 1239 and 569 fungal amplicon sequence variants (ASV), respectively, in the rhizospheric soil and roots of S. sclarea under TE-polluted conditions. Remarkably, 69 AMF species were detected at our experimental site, belonging to 12 AMF genera. Furthermore, the inoculation treatment significantly shaped the fungal communities in soil and increased the number of AMF ASVs in clary sage roots. In addition, clary sage cultivation over successive years could be one of the explanatory parameters for the inter-annual variation in both fungal and AMF communities in the soil and root biotopes. Our data provide new insights on fungal and AMF communities in the rhizospheric soil and roots of an aromatic plant, clary sage, grown in TE-polluted agricultural soil.

Effect of arbuscular mycorrhizal fungi (AMF) and plant growth-promoting rhizobacteria (PGPR) on microbial community composition of phenanthrene and pyrene contaminated soils using Illumina HiSeq sequencing

2021 ◽  
Author(s):  
Wei Li ◽  
Wenbin Li ◽  
Lijun Xing ◽  
Shaoxia Guo
Keyword(s):  
Microbial Community ◽  
Community Composition ◽  
Tall Fescue ◽  
Contaminated Soil ◽  
Contaminated Soils ◽  
Mycorrhizal Fungi ◽  
Microbial Community Composition ◽  
Arbuscular Mycorrhizal ◽  
Plant Growth Promoting Rhizobacteria ◽  
Illumina Hiseq

Abstract In order to determine the influence of arbuscular mycorrhizal fungi (AMF, Glomus versiforme) and plant growth-promoting rhizobacteria (PGPR, Pseudomonas fluorescens, Ps2-6) on degradation of phenanthrene (PHE) and pyrene (PYR) and the change of microbial community composition in soils planted with tall fescue (Festuca elata), four treatments were set up in phenanthrene (PHE) and pyrene (PYR) contaminated soil: tall fescue (CK), AMF + tall fescue (GV), PGPR + tall fescue (PS), and AMF + PGPR + tall fescue (GVPS). Our results showed that the highest removal percentage of PHE and PYR in contaminated soil as well as biomass of tall fescue were observed in GVPS. PHE and PYR accumulation by tall fescue roots were higher than shoots, the mycorrhizal status was best manifested in the roots of tall fescue inoculated with GVPS, and GVPS significantly increased the number of PGPR proliferation in tall fescue rhizosphere soil. Paired-end Illumina HiSeq analysis of the 16S rRNA gene and Internal Transcribed Spacer (ITS) region sequences was used to assess changes in the bacterial and fungal communities composition of the four treatments. GVPS positively affected the species and abundance of bacteria and fungi in PHE and PYR contaminated soil, an average of 71,144 high quality bacterial 16S rDNA tags and 102,455 ITS tags were obtained in GVPS, and all of them were assigned to 6,327 and 825 operational taxonomic units (OTUs) at a 97% similarity, respectively. Sequence analysis revealed that Proteobacteria was the dominant bacterial phylum, Ascomycota was the dominant fungal phylum in all treatments, whereas Proteobacteria and Glomeromycota were the most prevalent bacterial and fungal phyla in GVPS, respectively. And in the generic level, Planctomyces and Meyerozyma were the richest bacterial and fungal genus in all treatments, respectively, whereas Sphingomonas and Fusarium were the dominant bacterial and fungi genus in GVPS. Overall, our findings revealed that application of Glomus versiforme and Pseudomonas fluorescens, Ps2-6 had an effective role in improving the growth characteristics, root infection of F. elata and soil microbial community composition in PHE and PYR contaminated soils, but no obvious in degradation efficiencies of PHE and PYR as compared to the control.

Evaluation of Nanotechniques and Conventional Techniques for the Removal of Dioxins

2018 ◽  
Vol 9 (1) ◽  
pp. 79-84
Author(s):  
Vaishali V. Shahare ◽  
Rajni Grover ◽  
Suman Meena
Keyword(s):  
Soil Sample ◽  
Human Health ◽  
Surface Area ◽  
Contaminated Soil ◽  
Conventional Treatment ◽  
Volume Ratio ◽  
Soil Samples ◽  
Dioxins And Furans ◽  
Palladized Iron ◽  
The Impact

Background: The persistent dioxins/furans has caused a worldwide concern as they influence the human health. Recent research indicates that nonmaterial may prove effective in the degradation of Dioxins/furans. The nanomaterials are very reactive owing to their large surface area to volume ratio and large number of reactive sites. However, nanotechnology applications face both the challenges and the opportunities to influence the area of environmental protection. Objective: i) To study the impact of oil mediated UV-irradiations on the removal of 2,3,7,8-TCDD, 2,3,7,8-TCDF, OCDD and OCDF in simulated soil samples. ii) To compare the conventional treatment methods with the modern available nanotechniques for the removal of selected Dioxins/furans from soil samples. Methods: The present work has investigated an opportunity of the degradation of tetra and octachlorinated dioxins and furans by using oil mediated UV radiations with subsequent extraction of respective dioxins/furans from soils. The results have been compared with the available nanotechniques. Results: The dioxin congeners in the simulated soil sample showed decrease in concentration with the increase in the exposure time and intensity of UV radiations. The dechlorination of PCDD/Fs using palladized iron has been found to be effective. Conclusion: Both the conventional methods and nanotechnology have a dramatic impact on the removal of Dioxins/furans in contaminated soil. However, the nanotechniques are comparatively costlier and despite the relatively high rates of PCDDs dechlorination by Pd/nFe, small fraction of the dioxins are recalcitrant to degradation over considerable exposure times.

scholarly journals Fractionation of Heavy Metals in Multi-Contaminated Soil Treated with Biochar Using the Sequential Extraction Procedure

Biomolecules ◽  
2021 ◽  
Vol 11 (3) ◽  
pp. 448
Author(s):  
Mahrous Awad ◽  
Zhongzhen Liu ◽  
Milan Skalicky ◽  
Eldessoky S. Dessoky ◽  
Marian Brestic ◽  
...  
Keyword(s):  
Heavy Metals ◽  
Organic Matter ◽  
Soil Organic Matter ◽  
Soil Ph ◽  
Contaminated Soil ◽  
Contaminated Soils ◽  
Extraction Procedure ◽  
Sequential Fractionation ◽  
Relationship Of ◽  
The Relationship

Heavy metals (HMs) toxicity represents a global problem depending on the soil environment’s geochemical forms. Biochar addition safely reduces HMs mobile forms, thus, reducing their toxicity to plants. While several studies have shown that biochar could significantly stabilize HMs in contaminated soils, the study of the relationship of soil properties to potential mechanisms still needs further clarification; hence the importance of assessing a naturally contaminated soil amended, in this case with Paulownia biochar (PB) and Bamboo biochar (BB) to fractionate Pb, Cd, Zn, and Cu using short sequential fractionation plans. The relationship of soil pH and organic matter and its effect on the redistribution of these metals were estimated. The results indicated that the acid-soluble metals decreased while the fraction bound to organic matter increased compared to untreated pots. The increase in the organic matter metal-bound was mostly at the expense of the decrease in the acid extractable and Fe/Mn bound ones. The highest application of PB increased the organically bound fraction of Pb, Cd, Zn, and Cu (62, 61, 34, and 61%, respectively), while the BB increased them (61, 49, 42, and 22%, respectively) over the control. Meanwhile, Fe/Mn oxides bound represents the large portion associated with zinc and copper. Concerning soil organic matter (SOM) and soil pH, as potential tools to reduce the risk of the target metals, a significant positive correlation was observed with acid-soluble extractable metal, while a negative correlation was obtained with organic matter-bound metal. The principal component analysis (PCA) shows that the total variance represents 89.7% for the TCPL-extractable and HMs forms and their relation to pH and SOM, which confirms the positive effect of the pH and SOM under PB and BB treatments on reducing the risk of the studied metals. The mobility and bioavailability of these metals and their geochemical forms widely varied according to pH, soil organic matter, biochar types, and application rates. As an environmentally friendly and economical material, biochar emphasizes its importance as a tool that makes the soil more suitable for safe cultivation in the short term and its long-term sustainability. This study proves that it reduces the mobility of HMs, their environmental risks and contributes to food safety. It also confirms that performing more controlled experiments, such as a pot, is a disciplined and effective way to assess the suitability of different types of biochar as soil modifications to restore HMs contaminated soil via controlling the mobilization of these minerals.

scholarly journals Identifying Hidden Viable Bacterial Taxa in Tropical Forest Soils Using Amplicon Sequencing of Enrichment Cultures

Biology ◽  
2021 ◽  
Vol 10 (7) ◽  
pp. 569
Author(s):  
Chakriya Sansupa ◽  
Sara Fareed Mohamed Wahdan ◽  
Terd Disayathanoowat ◽  
Witoon Purahong
Keyword(s):  
Bacterial Community ◽  
Forest Soil ◽  
Culture Media ◽  
Enrichment Culture ◽  
Sequence Similarity ◽  
Illumina Miseq ◽  
Amplicon Sequencing ◽  
Soil Samples ◽  
Enrichment Cultures ◽  
Total Community

This study aims to estimate the proportion and diversity of soil bacteria derived from eDNA-based and culture-based methods. Specifically, we used Illumina Miseq to sequence and characterize the bacterial communities from (i) DNA extracted directly from forest soil and (ii) DNA extracted from a mixture of bacterial colonies obtained by enrichment cultures on agar plates of the same forest soil samples. The amplicon sequencing of enrichment cultures allowed us to rapidly screen a culturable community in an environmental sample. In comparison with an eDNA community (based on a 97% sequence similarity threshold), the fact that enrichment cultures could capture both rare and abundant bacterial taxa in forest soil samples was demonstrated. Enrichment culture and eDNA communities shared 2% of OTUs detected in total community, whereas 88% of enrichment cultures community (15% of total community) could not be detected by eDNA. The enrichment culture-based methods observed 17% of the bacteria in total community. FAPROTAX functional prediction showed that the rare and unique taxa, which were detected with the enrichment cultures, have potential to perform important functions in soil systems. We suggest that enrichment culture-based amplicon sequencing could be a beneficial approach to evaluate a cultured bacterial community. Combining this approach together with the eDNA method could provide more comprehensive information of a bacterial community. We expected that more unique cultured taxa could be detected if further studies used both selective and non-selective culture media to enrich bacteria at the first step.

scholarly journals Arbuscular Mycorrhizal Fungal Communities in the Soils of Desert Habitats

2021 ◽  
Vol 9 (2) ◽  
pp. 229
Author(s):  
Martti Vasar ◽  
John Davison ◽  
Siim-Kaarel Sepp ◽  
Maarja Öpik ◽  
Mari Moora ◽  
...  
Keyword(s):  
Plant Root ◽  
Significant Proportion ◽  
Arbuscular Mycorrhizal ◽  
Am Fungi ◽  
Illumina Miseq ◽  
Desert Ecosystems ◽  
Fungal Dna ◽  
Root Symbionts ◽  
Arbuscular Mycorrhizal Fungal

Deserts cover a significant proportion of the Earth’s surface and continue to expand as a consequence of climate change. Mutualistic arbuscular mycorrhizal (AM) fungi are functionally important plant root symbionts, and may be particularly important in drought stressed systems such as deserts. Here we provide a first molecular characterization of the AM fungi occurring in several desert ecosystems worldwide. We sequenced AM fungal DNA from soil samples collected from deserts in six different regions of the globe using the primer pair WANDA-AML2 with Illumina MiSeq. We recorded altogether 50 AM fungal phylotypes. Glomeraceae was the most common family, while Claroideoglomeraceae, Diversisporaceae and Acaulosporaceae were represented with lower frequency and abundance. The most diverse site, with 35 virtual taxa (VT), was in the Israeli Negev desert. Sites representing harsh conditions yielded relatively few reads and low richness estimates, for example, a Saudi Arabian desert site where only three Diversispora VT were recorded. The AM fungal taxa recorded in the desert soils are mostly geographically and ecologically widespread. However, in four sites out of six, communities comprised more desert-affiliated taxa (according to the MaarjAM database) than expected at random. AM fungal VT present in samples were phylogenetically clustered compared with the global taxon pool, suggesting that nonrandom assembly processes, notably habitat filtering, may have shaped desert fungal assemblages.

scholarly journals Dynamic of Morphological and Physiological Parameters and Variation of Soil Characteristics during Miscanthus × giganteus Cultivation in the Diesel-Contaminated Land

Agronomy ◽  
2021 ◽  
Vol 11 (4) ◽  
pp. 798
Author(s):  
Valentina Pidlisnyuk ◽  
Andriy Herts ◽  
Volodymyr Khomenchuk ◽  
Aigerim Mamirova ◽  
Oleksandr Kononchuk ◽  
...  
Keyword(s):  
Contaminated Soil ◽  
Contaminated Soils ◽  
Soil Characteristics ◽  
Physiological Parameters ◽  
Wastewater Sludge ◽  
Contaminated Land ◽  
Miscanthus Giganteus ◽  
Uncontaminated Soil ◽  
Stems And Leaves ◽  
Biochar Amendment

Miscanthus × giganteus (M. × giganteus) is a perspective plant produced on marginal and contaminated lands with biomass used for energy or bioproducts. In the current study, M. × giganteus development was tested in the diesel-contaminated soils (ranged from 250 mg kg−1 to 5000 mg kg−1) and the growth dynamic, leaves quantity, plants total area, number of harvested stems and leaves, SPAD and NPQt parameters were evaluated. Results showed a remarkable M. × giganteus growth in a selected interval of diesel-contaminated soil with sufficient harvested biomass. The amendment of soil by biochar 1 (produced from wastewater sludge) and biochar 2 (produced from a mixture of wood waste and biohumus) improved the crop’s morphological and physiological parameters. Biochar 1 stimulated the increase of the stems’ biomass, while biochar 2 increased the leaves biomass. The plants growing in the uncontaminated soil decreased the content of NO3, pH (KCl), P2O5 and increased the content of NH4. Photosynthesis parameters showed that incorporating biochar 1 and biochar 2 to the diesel-contaminated soil prolonged the plants’ vegetation, which was more potent for biochar 1. M. × giganteus utilization united with biochar amendment can be recommended to remediate diesel-contaminated land in concentration range 250–5000 mg kg−1.

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