scholarly journals Proteome-Wide Analyses Provide New Insights into the Compatible Interaction of Rice with the Root-Knot Nematode Meloidogyne graminicola

2020 ◽  
Vol 21 (16) ◽  
pp. 5640
Author(s):  
Chao Xiang ◽  
Xiaoping Yang ◽  
Deliang Peng ◽  
Houxiang Kang ◽  
Maoyan Liu ◽  
...  
Keyword(s):  
Cinnamyl Alcohol Dehydrogenase ◽  
Rice Cultivar ◽  
Glutathione Metabolism ◽  
Japonica Rice ◽  
Label Free ◽  
Compatible Interaction ◽  
Root Knot Nematode ◽  
Alpha Linolenic Acid ◽  
Meloidogyne Graminicola ◽  
Disease Defense

The root-knot nematode Meloidogyne graminicola is an important pathogen in rice, causing huge yield losses annually worldwide. Details of the interaction between rice and M. graminicola and the resistance genes in rice still remain unclear. In this study, proteome-wide analyses of the compatible interaction of the japonica rice cultivar “Nipponbare” (NPB) with M. graminicola were performed. In total, 6072 proteins were identified in NPB roots with and without infection of M. graminicola by label-free quantitative mass spectrometry. Of these, 513 specifically or significantly differentially expressed proteins were identified to be uniquely caused by nematode infection. Among these unique proteins, 99 proteins were enriched on seven Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways. By comparison of protein expression and gene transcription, LOC_Os01g06600 (ACX, a glutaryl-CoA dehydrogenase), LOC_Os09g23560 (CAD, a cinnamyl-alcohol dehydrogenase), LOC_Os03g39850 (GST, a glutathione S-transferase) and LOC_Os11g11960 (RPM1, a disease resistance protein) on the alpha-linolenic acid metabolism, phenylpropanoid biosynthesis, glutathione metabolism and plant–pathogen interaction pathways, respectively, were all associated with disease defense and identified to be significantly down-regulated in the compatible interaction of NPB with nematodes, while the corresponding genes were remarkably up-regulated in the roots of a resistant rice accession “Khao Pahk Maw” with infection of nematodes. These four genes likely played important roles in the compatible interaction of rice with M. graminicola. Conversely, these disease defense-related genes were hypothesized to be likely involved in the resistance of resistant rice lines to this nematode. The proteome-wide analyses provided many new insights into the interaction of rice with M. graminicola.

scholarly journals Phosphoproteomic Analysis of Two Contrasting Maize Inbred Lines Provides Insights into the Mechanism of Salt-Stress Tolerance

2019 ◽  
Vol 20 (8) ◽  
pp. 1886 ◽  
Author(s):  
Xiaoyun Zhao ◽  
Xue Bai ◽  
Caifu Jiang ◽  
Zhen Li
Keyword(s):  
Salt Stress ◽  
Inbred Line ◽  
Carbon Metabolism ◽  
Phosphoenolpyruvate Carboxykinase ◽  
Glutathione Metabolism ◽  
Label Free ◽  
Plasma Membrane Intrinsic Protein ◽  
Sodium Hydrogen ◽  
Salt Response ◽  
Sodium Hydrogen Exchanger

Salinity is a major abiotic stress that limits maize yield and quality throughout the world. We investigated phosphoproteomics differences between a salt-tolerant inbred line (Zheng58) and a salt-sensitive inbred line (Chang7-2) in response to short-term salt stress using label-free quantitation. A total of 9448 unique phosphorylation sites from 4116 phosphoproteins in roots and shoots of Zheng58 and Chang7-2 were identified. A total of 209 and 243 differentially regulated phosphoproteins (DRPPs) in response to NaCl treatment were detected in roots and shoots, respectively. Functional analysis of these DRPPs showed that they were involved in carbon metabolism, glutathione metabolism, transport, and signal transduction. Among these phosphoproteins, the expression of 6-phosphogluconate dehydrogenase 2, pyruvate dehydrogenase, phosphoenolpyruvate carboxykinase, glutamate decarboxylase, glutamate synthase, l-gulonolactone oxidase-like, potassium channel AKT1, high-affinity potassium transporter, sodium/hydrogen exchanger, and calcium/proton exchanger CAX1-like protein were significantly regulated in roots, while phosphoenolpyruvate carboxylase 1, phosphoenolpyruvate carboxykinase, sodium/hydrogen exchanger, plasma membrane intrinsic protein 2, glutathione transferases, and abscisic acid-insensitive 5-like protein were significantly regulated in shoots. Zheng58 may activate carbon metabolism, glutathione and ascorbic acid metabolism, potassium and sodium transportation, and the accumulation of glutamate to enhance its salt tolerance. Our results help to elucidate the mechanisms of salt response in maize seedlings. They also provide a basis for further study of the mechanism underlying salt response and tolerance in maize and other crops.

scholarly journals Evaluation of Organic Amendments against Rice Root-KnotNematode at Seedling Stage of Rice

1970 ◽  
Vol 9 ◽  
pp. 21-27 ◽  
Author(s):  
Nabin Kumar Dangal ◽  
D. Sharma Poudyal ◽  
S. M. Shrestha ◽  
C. Adhikari ◽  
J. M. Duxbury ◽  
...  
Keyword(s):  
Block Design ◽  
Organic Amendments ◽  
Severity Index ◽  
Rice Root ◽  
Chicken Manure ◽  
Root Weight ◽  
Root Knot Nematode ◽  
Meloidogyne Graminicola ◽  
Shoot Weight ◽  
Lesion Severity

Pot experiment was conducted during July-September 2006 to evaluate some organic amendments such as sesame (Sesamum indicum) biomass, buckwheat (Fagopyrum esculentum) biomass, neem (Azadirachta indica) leaves, chinaberry (Melia azedarch) leaves and chicken manure @ 1, 2 and 3 t ha-1 each against the rice root-knot nematode (Meloidogyne graminicola Golden & Birchfield) in direct seeded rice. The treatments were replicated five times in a randomized complete block design. The number of second stage juveniles (J2) of M. graminicola was significantly low in chicken manure @ 3 t ha-1. The root knot severity index was significantly low in sesame @ 3 t ha-1, chinaberry @ 3, 2 or 1 t ha-1, neem @ 3 t ha-1 and chicken manure @ 2 or 3 t ha-1 amended soil but root lesion severity index was lower only in chicken manure @ 2 t ha-1 treated plots. The fresh shoot weight and length were significantly high in chicken manure amendment @ 2 or 3 t ha-1 at 45th day after seeding. However, the fresh root weight, length, number of leaves and number of J2 recovered from the roots were non-significant. Key words: biomass; juveniles; Meloidogyne graminicola; root-knot severity index; root lesion severity index DOI: 10.3126/njst.v9i0.3160 Nepal Journal of Science and Technology 9 (2008) 21-27

scholarly journals Identification of quantitative trait loci for leaf traits in rice

Genetika ◽  
2016 ◽  
Vol 48 (2) ◽  
pp. 643-652 ◽  
Author(s):  
Baoyan Jia ◽  
Xinhua Zhao ◽  
Yang Qin ◽  
Muhammad Irfan ◽  
Tae-Heon Kim ◽  
...  
Keyword(s):  
Recombinant Inbred Lines ◽  
Leaf Traits ◽  
Rice Cultivar ◽  
Interval Mapping ◽  
Mapping Method ◽  
Japonica Rice ◽  
Phenotypic Variance ◽  
Simple Sequence ◽  
Variance Explained ◽  
Map Distance

A recombinant inbred lines (RILs) population of 90 lines were developed from a subspecies cross between an indica type cultivar, ?Cheongcheong?, and a japonica rice cultivar, ?Nagdong? was evaluated for leaf traits in 2009. A genetic linkage map consisting of 154 simple sequence repeat (SSR) markers was constructed, covering 1973.6 cM of 12 chromosomes with an average map distance of 13.9 cM between markers. By composite interval mapping method a total of 19 QTLs were identified for the leaf traits on 5 chromosomes (Chr.1, Chr.3, Chr.6, Chr.8 and Chr.11). The percentage of phenotypic variance explained by each QTL varied from 8.1% to 29.4%. Five pleiotropic effects loci were identified on chromosomes 1,6.

scholarly journals Evaluation of rice landraces against rice root-knot nematode, Meloidogyne graminicola

2015 ◽  
Vol 9 (16) ◽  
pp. 1128-1131 ◽  
Author(s):  
Ravindra H ◽  
Sehgal Mukesh ◽  
B Narasimhamurthy H ◽  
S Imran Khan H ◽  
A Shruthi S
Keyword(s):  
Rice Root ◽  
Root Knot Nematode ◽  
Meloidogyne Graminicola ◽  
Rice Landraces
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