scholarly journals Genome-Wide Association Study of Metamizole-Induced Agranulocytosis in European Populations

Genes ◽  
2020 ◽  
Vol 11 (11) ◽  
pp. 1275
Author(s):  
Anca Cismaru ◽  
Deborah Rudin ◽  
Luisa Ibañez ◽  
Evangelia Liakoni ◽  
Nicolas Bonadies ◽  
...  

Agranulocytosis is a rare yet severe idiosyncratic adverse drug reaction to metamizole, an analgesic widely used in countries such as Switzerland and Germany. Notably, an underlying mechanism has not yet been fully elucidated and no predictive factors are known to identify at-risk patients. With the aim to identify genetic susceptibility variants to metamizole-induced agranulocytosis (MIA) and neutropenia (MIN), we conducted a retrospective multi-center collaboration including cases and controls from three European populations. Association analyses were performed using genome-wide genotyping data from a Swiss cohort (45 cases, 191 controls) followed by replication in two independent European cohorts (41 cases, 273 controls) and a joint discovery meta-analysis. No genome-wide significant associations (p < 1 × 10−7) were observed in the Swiss cohort or in the joint meta-analysis, and no candidate genes suggesting an immune-mediated mechanism were identified. In the joint meta-analysis of MIA cases across all cohorts, two candidate loci on chromosome 9 were identified, rs55898176 (OR = 4.01, 95%CI: 2.41–6.68, p = 1.01 × 10−7) and rs4427239 (OR = 5.47, 95%CI: 2.81–10.65, p = 5.75 × 10−7), of which the latter is located in the SVEP1 gene previously implicated in hematopoiesis. This first genome-wide association study for MIA identified suggestive associations with biological plausibility that may be used as a stepping-stone for post-GWAS analyses to gain further insight into the mechanism underlying MIA.

2009 ◽  
Vol 41 (2) ◽  
pp. 157-159 ◽  
Author(s):  
David Meyre ◽  
Jérôme Delplanque ◽  
Jean-Claude Chèvre ◽  
Cécile Lecoeur ◽  
Stéphane Lobbens ◽  
...  

Author(s):  
Mengyao Yu ◽  
Sergiy Kyryachenko ◽  
Stephanie Debette ◽  
Philippe Amouyel ◽  
Jean-Jacques Schott ◽  
...  

Background: Mitral valve prolapse (MVP) is a common cardiac valve disease, which affects 1 in 40 in the general population. Previous genome-wide association study have identified 6 risk loci for MVP. But these loci explained only partially the genetic risk for MVP. We aim to identify additional risk loci for MVP by adding data set from the UK Biobank. Methods: We reanalyzed 1007/479 cases from the MVP-France study, 1469/862 controls from the MVP-Nantes study for reimputation genotypes using HRC and TOPMed panels. We also incorporated 434 MVP cases and 4527 controls from the UK Biobank for discovery analyses. Genetic association was conducted using SNPTEST and meta-analyses using METAL. We used FUMA for post-genome-wide association study annotations and MAGMA for gene-based and gene-set analyses. Results: We found TOPMed imputation to perform better in terms of accuracy in the lower ranges of minor allele frequency below 0.1. Our updated meta-analysis included UK Biobank study for ≈8 million common single-nucleotide polymorphisms (minor allele frequency >0.01) and replicated the association on Chr2 as the top association signal near TNS1 . We identified an additional risk locus on Chr1 ( SYT2 ) and 2 suggestive risk loci on chr8 ( MSRA ) and chr19 ( FBXO46 ), all driven by common variants. Gene-based association using MAGMA revealed 6 risk genes for MVP with pronounced expression levels in cardiovascular tissues, especially the heart and globally part of enriched GO terms related to cardiac development. Conclusions: We report an updated meta-analysis genome-wide association study for MVP using dense imputation coverage and an improved case-control sample. We describe several loci and genes with MVP spanning biological mechanisms highly relevant to MVP, especially during valve and heart development.


Hypertension ◽  
2013 ◽  
Vol 62 (5) ◽  
pp. 853-859 ◽  
Author(s):  
Tanika N. Kelly ◽  
Fumihiko Takeuchi ◽  
Yasuharu Tabara ◽  
Todd L. Edwards ◽  
Young Jin Kim ◽  
...  

2018 ◽  
Vol 36 (Supplement 1) ◽  
pp. e94
Author(s):  
M. Kleber ◽  
L.P. Lyytikainen ◽  
G.E. Delgado ◽  
C. Drechsler ◽  
C. Wanner ◽  
...  

2018 ◽  
Vol 8 (1) ◽  
Author(s):  
Melanie D. Napier ◽  
Nora Franceschini ◽  
Rahul Gondalia ◽  
James D. Stewart ◽  
Raúl Méndez-Giráldez ◽  
...  

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