scholarly journals Metabolome and Transcriptome Analyses Reveal Different Flavonoid Biosynthesis and Chlorophyll Metabolism Profiles between Red Leaf and Green Leaf of Eucommia ulmoides

Forests ◽  
2021 ◽  
Vol 12 (9) ◽  
pp. 1260
Author(s):  
Yun Yang ◽  
Mengjiao Chen ◽  
Yaxin Liu ◽  
Huanhuan Ding ◽  
Hongyan Du ◽  
...  
Keyword(s):  
Woody Plants ◽  
Chlorophyll Biosynthesis ◽  
Natural Antioxidants ◽  
Morphological Observation ◽  
Anthocyanin Synthesis ◽  
Anthocyanin Content ◽  
Eucommia Ulmoides ◽  
Chlorophyll Metabolism ◽  
Green Leaves ◽  
Leaf Coloration

Flavonoids are natural antioxidants in plants that affect the color of plant tissues. Flavonoids can be divided into eight subgroups, including flavonols, anthocyanins, and proanthocyanidins. The mechanisms of flavonoid synthesis in model plants have been widely studied. However, there are a limited number of reports on the synthesis of flavonoids in the red leaf varieties of woody plants. In this study, we combined morphological observation, pigment content determination, metabolomics, and transcriptomics to investigate the metabolites and gene regulation present in the red and green leaves of Eucommia ulmoides Oliv. The results showed that the red leaves have a lower chlorophyll content and a higher anthocyanin content. Metabonomic analysis identified that the relative content of most flavonoids is up-regulated in red leaves based on UPLC-ESI-MS/MS, which included the apigenin class, quercetin class, kaempferol class, and procyanidins. Transcriptome data suggested that the differentially up-regulated genes are enriched in flavonoid and anthocyanin synthesis pathways, ABC transport, and GST pathways. The integrative analysis of the transcriptome and metabolome showed that the up-regulation of flavonoid metabolism and a high expression of chlorophyll degradation with the down-regulation of chlorophyll biosynthesis genes are detected in E. ulmoides red leaves compared with green leaves. In addition, the co-expression networks implied that cyanidin 3-5-O-diglucoside, EuDR5, EuPAL2, EuDFR11, Eu3MaT1, and EuF3′H are likely associated with the red leaf coloration of E. ulmoides. In summary, this research provided a reference for studying the mechanism of red leaf coloration in woody plants and the use of E. ulmoides red leaves as feedstock for bioactive products.

scholarly journals Simultaneous changes in anthocyanin, chlorophyll, and carotenoid contents produce green variegation in pink–leaved ornamental kale

BMC Genomics ◽  
2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Yang Liu ◽  
Xin Feng ◽  
Yuting Zhang ◽  
Fuhui Zhou ◽  
Pengfang Zhu
Keyword(s):  
Molecular Mechanisms ◽  
Color Change ◽  
Anthocyanin Biosynthesis ◽  
Carotenoid Biosynthesis ◽  
Anthocyanin Content ◽  
Leaf Color ◽  
Chlorophyll Metabolism ◽  
Leaf Coloration ◽  
New Varieties ◽  
Ornamental Kale

Abstract Background Anthocyanin, chlorophyll, and carotenoid pigments are widely distributed in plants, producing various colors. Ornamental kale (Brassica oleracea var. acephala DC) which has colorful inner leaves is an ideal plant to explore how these three pigments contribute to leaf color. The molecular mechanisms of the coloration in ornamental kale could provide reference for exploring the mechanisms of pigmentation in other plants. Results In this study, we sequenced the transcriptome and determined the pigment contents of an unusual cultivar of ornamental kale with three different types of leaf coloration: pink (C3), light pink (C2), and variegated pink–green (C1). A total of 23,965 differentially expressed genes were detected in pairwise comparisons among the three types of leaves. The results indicate that Bo9g058630 coding dihydroflavonol 4–reductase (DFR) and Bo3g019080 coding shikimate O–hydroxycinnamoyltransferase (HCT) acted in anthocyanin biosynthesis in pink leaves. Bo1g053420 coding pheophorbidase (PPD) and Bo3g012430 coding 15–cis–phytoene synthase (crtB) were identified as candidate genes for chlorophyll metabolism and carotenoid biosynthesis, respectively. The transcription factors TT8, MYBL2, GATA21, GLK2, and RR1 might participate in triggering the leaf color change in ornamental kale. Anthocyanin content was highest in C3 and lowest in C1. Chlorophyll and carotenoid contents were lowest in C2 and highest in C1. Conclusions Based on these findings, we suspected that the decrease in anthocyanin biosynthesis and the increase in chlorophyll and carotenoid biosynthesis might be the reason for the leaf changing from pink to variegate pink–green in this unusual cultivar. Our research provides insight into the molecular mechanisms of leaf coloration in ornamental kale, contributing to a theoretical foundation for breeding new varieties.

scholarly journals Metabolome and Transcriptome Analyses of Red-colored Leaves From Eucommia Ulmoides ‘Huazhong No. 12’

2020 ◽  
Author(s):  
Yun Yang ◽  
Jiao Meng Chen ◽  
Huan Huan Ding ◽  
Jing Le Zhu ◽  
Yan Hong Du
Keyword(s):  
Gene Regulation ◽  
Differentially Expressed Genes ◽  
Differentially Expressed ◽  
Anthocyanin Synthesis ◽  
Anthocyanin Content ◽  
Eucommia Ulmoides ◽  
Total Anthocyanin ◽  
Anthocyanin Pathway ◽  
Total Anthocyanin Content ◽  
Pigment Contents

Abstract Background: Eucommia ulmoides ‘Oliver’ is an economically important tree species with highly medicinal and ecological values that is naturally distributed in China. E. ulmoides ‘Huazhong No. 12’ (H12) is the only red-leaf genotype of this species. In this study, the pigment contents of H12 and E. ulmoides ‘Huazhong No. 11’ (H11, green leaves) were determined. The differential metabolites in H12 and H11 were detected by UPLC-MS/MS, and the differentially expressed genes were screened by transcriptome. Then the key metabolites and corresponding gene regulation in anthocyanin related metabolic pathway were analyzed.Results: The chlorophyll a, chlorophyll b and carotenoid contents in H12 leaves were lower than H11, while the total anthocyanin content in H12 was 4.06 times higher than in H11. There were 96 up-regulated metabolites in H12, including anthocyanin, proanthocyanidins, flavonoid and flavonol. Among them, four differentially expressed anthocyanins were identified. A total of 8,368 differentially expressed genes were selected from transcriptome between H12 and H11. The flavone and flavonol biosynthesis pathway, anthocyanin pathway and photosynthetic pathway were analyzed. Finally, EuCHI, EuF3'H, EuF3'5'H, EuDFR and Eu3MaT1 were recommended as the key genes. The cyanidin, cyanidin 3-malonyl-glucoside and cyanidin 3, 5-glucoside were responsible for the H12 red leaves.Conclusion: This study revealed the metabolites and gene regulation of anthocyanin synthesis, and the potential function between the anthocyanin and photosynthetic gene expression in E. ulmoides red leaves. Notably, the results also provided a reference for the study of other plant leaf-coloring mechanisms.

scholarly journals Differences in Anthocyanin Accumulation Profiles between Teinturier and Non-Teinturier Cultivars during Ripening

Foods ◽  
2021 ◽  
Vol 10 (5) ◽  
pp. 1073
Author(s):  
Meng-Bo Tian ◽  
Lin Yuan ◽  
Ming-Yuan Zheng ◽  
Zhu-Mei Xi
Keyword(s):  
Gene Expression ◽  
Plant Secondary Metabolites ◽  
Anthocyanin Synthesis ◽  
Anthocyanin Content ◽  
Anthocyanin Accumulation ◽  
Total Anthocyanin ◽  
Total Anthocyanin Content ◽  
The Individual ◽  
Relative Gene ◽  
High Expression Level

Anthocyanins are vital components of plant secondary metabolites, and are also the most important coloring substances in wine. Teinturier cultivars are rich in anthocyanins. However, the differences in anthocyanin accumulation and profiles between teinturier and non-teinturier cultivars have not been reported. In this study, Yan 73 and Dunkelfelder were selected as the experimental materials, and three non-teinturier cultivars were used for comparison. LC-MS and qRT-PCR were used to determine the individual anthocyanin contents and the relative gene expression. The results show that the total anthocyanin content of the teinturier cultivars was considerably higher than that in non-teinturier cultivars, and the levels of individual anthocyanins increased gradually during ripening. Lower ratios of modified anthocyanins were found in the teinturier cultivars, which was not only due to the high expression level of VvUFGT and VvGST4, but also due to the relatively low expression of VvOMT in these cultivars. Cluster analysis of gene expression and anthocyanin accumulation showed that VvUFGT is related to anthocyanin accumulation, and that AM1 is related to the synthesis and transport of methylated anthocyanins. Our results will be useful for further clarifying the pathways of anthocyanin synthesis, modification, and transport in teinturier cultivars.

DFR and PAL gene transcription and their correlation with anthocyanin accumulation in Rhodomyrtus tomentosa (Aiton.) Hassk.

2018 ◽  
Vol 44 (3) ◽  
pp. 289-298
Author(s):  
Bao-Jun Zhu ◽  
Qian Wang ◽  
Jing-Hui Wang ◽  
Lin-Lin Gao ◽  
Jing-Wen Zhang ◽  
...  
Keyword(s):  
Expression Patterns ◽  
Pcr Analysis ◽  
Anthocyanin Synthesis ◽  
Anthocyanin Content ◽  
Transcript Levels ◽  
Color Development ◽  
Phenylalanine Ammonialyase ◽  
Maturity Period ◽  
Late Maturity ◽  
Rhodomyrtus Tomentosa

Abstract Objectives Rhodomyrtus tomentosa (Aiton.) Hassk. (R. tomentosa) is rich in nutrients and has multiple pharmacological applications. Anthocyanins confer color to the flowers and berries of R. tomentosa and provide protection against photodamage. The dihydroflavonol 4-reductase gene (DFR) and phenylalanine ammonialyase gene (PAL) are crucial for anthocyanin synthesis. Methods DFR and PAL transcript levels and anthocyanin content in the pigmented organs of R. tomentosa were investigated through qRT-PCR analysis and spectrophotometry, respectively. The glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene was selected as the reference gene for the normalization of DFR and PAL transcript levels. Results Transcript levels of DFR and PAL were higher in organs with vigorous metabolism than those in senescent organs. DFR and PAL transcript levels were up-regulated during the initial and middle-maturity periods of fruit. These expression patterns are consistent with fruit color development. The highest transcript levels of PAL and DFR were observed during the middle-maturity period or the red-fruit period. Conclusion During the late maturity period of R. tomentosa fruit, the transcript levels of the two genes were down-regulated even though anthocyanins were continuously accumulated, which was different from the accumulation of anthocyanins in some late mature fruits.

scholarly journals Anthocyanin Production Using Rough Bluegrass Treated with High-Intensity Light

HortScience ◽  
2016 ◽  
Vol 51 (9) ◽  
pp. 1111-1120 ◽  
Author(s):  
Dominic P. Petrella ◽  
James D. Metzger ◽  
Joshua J. Blakeslee ◽  
Edward J. Nangle ◽  
David S. Gardner
Keyword(s):  
Blue Light ◽  
High Intensity ◽  
Red Light ◽  
Leaf Tissue ◽  
Anthocyanin Synthesis ◽  
Anthocyanin Content ◽  
Poa Trivialis ◽  
Total Light ◽  
Anthocyanin Production ◽  
High Intensity Light

Anthocyanins are plant pigments that are in demand for medicinal and industrial uses. However, anthocyanin production is limited due to the harvest potential of the species currently used as anthocyanin sources. Rough bluegrass (Poa trivialis L.) is a perennial turfgrass known for accumulating anthocyanins, and may have the potential to serve as a source of anthocyanins through artificial light treatments. The objectives of this research were to determine optimal light conditions that favor anthocyanin synthesis in rough bluegrass, and to determine the suitability of rough bluegrass as a source of anthocyanins. When exposed to high-intensity white light, rough bluegrass increased anthocyanin content by 100-fold on average, and anthocyanin contents greater than 0.2% of dry tissue weight were observed in some samples. Blue light, at intensities between 150 and 250 μmol·m−2·s−1, was the only wavelength that increased anthocyanin content. However, when red light was applied with blue light at 30% or 50% of the total light intensity, anthocyanin content was increased compared with blue light alone. Further experiments demonstrated that these results may be potentially due to a combination of photosynthetic and photoreceptor-mediated regulation. Rough bluegrass is an attractive anthocyanin production system, since leaf tissue can be harvested while preserving meristematic tissues that allow new leaves to rapidly grow; thereby allowing multiple harvests in a single growing season and greater anthocyanin yields.

scholarly journals Molecular Sex Identification in the Hardy Rubber Tree (Eucommia ulmoides Oliver) via ddRAD Markers

2020 ◽  
Vol 2020 ◽  
pp. 1-10
Author(s):  
Wencai Wang ◽  
Guoqian Yang ◽  
Xin Deng ◽  
Fengqing Shao ◽  
Yongquan Li ◽  
...  
Keyword(s):  
Developmental Stages ◽  
Polymerase Chain Reaction Amplification ◽  
Rubber Tree ◽  
Sex Identification ◽  
Morphological Observation ◽  
Eucommia Ulmoides ◽  
Sex Recognition ◽  
Sex Determination System ◽  
Female Specific ◽  
Male Specific

Eucommia ulmoides, also known as the industrially and medicinally important hardy rubber tree, is the sole species of Eucommiaceae. Nevertheless, its dioecious property hinders sex recognition by traditional morphological observation at very early developmental stages, thus inhibiting breeding and economic cropping. In this study, double-digest restriction site-associated DNA sequencing (ddRAD-seq) was applied to screen sex-linked molecular markers for sex identification and investigation of the sex determination system in 20 male and female E. ulmoides individual plants, respectively. In consequence, five candidate male-specific loci but no female-specific loci were predicated among the 183,752 male and 147,122 female catalogue loci by bioinformatics analysis. Subsequent PCR (polymerase chain reaction) amplification and Sanger sequencing examinations were performed on another 24 individuals, 12 for each sex, from a separate population. One ideal sex-linked locus, MSL4, was identified among the five putative male-specific loci that were found using ddRAD data. MSL4 is 479 bp in length and highly conserved in all the male individuals, suggesting its feature of being stable and repeatable. Our results also indicated that the sex of E. ulmoides is likely determined genetically. In short, this study provides a consistent and reproducible ddRAD marker (MSL4) that is able to discriminate male from female seedlings in E. ulmoides, which will be valuable for rapid breeding practice and better commercial production of this economically important tree.

scholarly journals Dark/Light Treatments Followed by γ-Irradiation Increase the Frequency of Leaf-Color Mutants in Cymbidium

Plants ◽  
2020 ◽  
Vol 9 (4) ◽  
pp. 532 ◽  
Author(s):  
Sang Hoon Kim ◽  
Se Won Kim ◽  
Jaihyunk Ryu ◽  
Si-Yong Kang ◽  
Byoung-Cheorl Kang ◽  
...  
Keyword(s):  
Chlorophyll Biosynthesis ◽  
Flower Color ◽  
Light Treatment ◽  
Leaf Color ◽  
Γ Irradiation ◽  
Dark Light ◽  
Chlorophyll Metabolism ◽  
Anthocyanin Pathway ◽  
Pathway Gene ◽  
Radiation Treatments

Radiation randomly induces chromosomal mutations in plants. However, it was recently found that the frequency of flower-color mutants could be specifically increased by upregulating anthocyanin pathway gene expression before radiation treatments. The mechanisms of chlorophyll biosynthesis and degradation are active areas of plant study because chlorophyll metabolism is closely connected to photosynthesis. In this study, we determined the dark/light treatment conditions that resulted in upregulation of the expression levels of six chlorophyll pathway genes, uroporphyrinogen III synthase (HEMD), uroporphyrinogen III decarboxylase (HEME2), NADPH-protochlorophyllide oxidoreductase (POR) A (PORA), chlorophyll synthase (CHLG), chlorophyllase (CLH2), and red chlorophyll catabolite reductase (RCCR), and measured their effects on the γ-irradiation-induced frequencies of leaf-color mutants in two Cymbidium cultivars. To degrade chlorophyll in rhizomes, 60–75 days of dark treatment were required. To upregulate the expressions of chlorophyll pathway genes, 10 days of light treatment appeared to be optimal. Dark/light treatments followed by γ-irradiation increased chlorophyll-related leaf mutants by 1.4- to 2.0-fold compared with γ-ray treatment alone. Dark/light treatments combined with γ-irradiation increased the frequency of leaf-color mutants in Cymbidium, which supports the wider implementation of a plant breeding methodology that increases the mutation frequency of a target trait by controlling the expression of target trait-related genes.

scholarly journals Physiological and Anatomical Differences and Differentially Expressed Genes Reveal Yellow Leaf Coloration in Shumard Oak

Plants ◽  
2020 ◽  
Vol 9 (2) ◽  
pp. 169
Author(s):  
Xiaoyun Dong ◽  
Libin Huang ◽  
Qingsheng Chen ◽  
Yunzhou Lv ◽  
Hainan Sun ◽  
...  
Keyword(s):  
Chlorophyll Content ◽  
Differentially Expressed Genes ◽  
Structural Damage ◽  
Chlorophyll Biosynthesis ◽  
Differentially Expressed ◽  
Carotenoid Content ◽  
Yellow Leaf ◽  
Pheophorbide A ◽  
Chlorophyll Fluorescence Parameters ◽  
Leaf Coloration

Shumard oak (Quercus shumardii Buckley) is a traditional foliage plant, but little is known about its regulatory mechanism of yellow leaf coloration. Here, the yellow leaf variety of Q. shumardii named ‘Zhongshan Hongjincai’ (identified as ‘ZH’ throughout this work) and a green leaf variety named ‘Shumard oak No. 23’ (identified as ‘SO’ throughout this work) were compared. ‘ZH’ had lower chlorophyll content and higher carotenoid content; photosynthetic characteristics and chlorophyll fluorescence parameters were also lower. Moreover, the mesophyll cells of ‘ZH’ showed reduced number of chloroplasts and some structural damage. In addition, transcriptomic analysis identified 39,962 differentially expressed genes, and their expression levels were randomly verified. Expressions of chlorophyll biosynthesis-related glumly-tRNA reductase gene and Mg-chelatase gene were decreased, while pheophorbide a oxygenase gene associated with chlorophyll degradation was up-regulated in ‘ZH’. Simultaneously, carotenoid isomerase gene, z-carotene desaturase gene, violaxanthin de-epoxidase gene and zeaxanthin epoxidase gene involved in carotenoid biosynthesis were up-regulated in ‘ZH’. These gene expression changes were accompanied by decreased chlorophyll content and enhanced carotenoid accumulation in ‘ZH’. Consequently, changes in the ratio of carotenoids to chlorophyll could be driving the yellow leaf coloration in Q. shumardii.

scholarly journals Improving the Anthocyanin Accumulation of Hypocotyls in Radish Sprouts by Hemin-induced NO

2020 ◽  
Author(s):  
Nana Su ◽  
Ze Liu ◽  
Hui Chen ◽  
Mengyang Niu ◽  
Jin Cui
Keyword(s):  
Nitric Oxide ◽  
Transcription Factors ◽  
Anthocyanin Biosynthesis ◽  
Reductase Activity ◽  
Specific Inhibitor ◽  
Anthocyanin Synthesis ◽  
Zinc Protoporphyrin ◽  
Anthocyanin Content ◽  
Anthocyanin Accumulation ◽  
Radish Sprouts

Abstract Background: The biosynthesis of anthocyanin in the hypocotyls of radish (Raphanus sativus L.) sprouts was enhanced by hemin in our preliminary experiments, but the underlying mechanism is unclear. Here, we found that NO (nitric oxide) exerted an essential role in Hemin-regulated anthocyanin biosynthesis, which was supported by the following results.Results: Hemin boosted anthocyanin as well as NO content. NO-scavenger cPTIO (carboxy-PTIO) significantly attenuated hemin-induced increase of anthocyanin content, transcripts of anthocyanin synthesis related genes and positive transcription factors, implying that NO played a prominent role during hemin-induced anthocyanin biosynthesis. Hemin specific inhibitor ZnPP (Zinc Protoporphyrin) strongly reduced anthocyanin content, while, NO donor SNP (Sodium Nitroprusside) addition considerably reversed this inhibition and by contrast, resulted in a significant increase in anthocyanin accumulation, closely paralleling the transcripts of structural genes and transcription factors. Moreover, NO content, NR (nitrate reductase) activity and expression level of NOA (nitric oxide associated factor) were up-regulated by Hemin. Conclusions:Those consequences indicated that NO might work downstream in Hemin-heightened anthocyanin accumulation in radish sprouts.

scholarly journals Pericarp Pigmentation Correlates with Hormones and Intensifies with Continuation of Bud Sport Generations from ‘Red Delicious’

2018 ◽  
Author(s):  
Wen-Fang Li ◽  
Juan Mao ◽  
Shi-Jin Yang ◽  
Zhi-Gang Guo ◽  
Zong-Huan Ma ◽  
...  
Keyword(s):  
Molecular Level ◽  
Anthocyanin Synthesis ◽  
Anthocyanin Content ◽  
Biosynthesis Pathway ◽  
Anthocyanin Accumulation ◽  
Structural Genes ◽  
Bud Sport ◽  
Phenylpropanoid Biosynthesis ◽  
Highly Correlated ◽  
Flavonoid Biosynthesis Pathway

ABSTRACTBud sport mutants of apple (Malus domestica Borkh.) trees with a highly blushed colouring pattern are mainly caused by the accumulation of anthocyanins in the pericarp. Hormones are important factors modulating anthocyanin accumulation. However, a good understanding of the interplay between hormones and anthocyanin synthesis in apples, especially in mutants at the molecular level, remains elusive. Here, physiological and comparative transcriptome approaches were used to reveal the molecular basis of pericarp pigmentation in ‘Red Delicious’ and its mutants, including ‘Starking Red’, ‘Starkrimson’, ‘Campbell Redchief’ and ‘Vallee spur’, which were designated G0 to G4, respectively. Pericarp pigmentation gradually proliferated from G0 to G4. The anthocyanin content was higher in the mutants than in ‘Red Delicious’. The activation of early phenylpropanoid biosynthesis genes, including ASP3, PAL, 4CL, PER, CHS, CYP98A and F3’H, was responsible for anthocyanin accumulation in mutants. In addition, IAA and ABA had a positive regulatory effect on the synthesis of anthocyanins, while GA had the reverse effect. The down-regulation of AACT1, HMGS, HMGR, MVK, MVD2, IDI1 and FPPS2 involved in terpenoid biosynthesis influences anthocyanin accumulation by positively regulating transcripts of AUX1 and SAUR that contribute to the synthesis of IAA, GID2 to GA, PP2C and SnRK2 to ABA. Furthermore, MYB and bHLH members, which are highly correlated (r=0.882–0.980) with anthocyanin content, modulated anthocyanin accumulation by regulating the transcription of structural genes, including CHS and F3’H, involved in the flavonoid biosynthesis pathway.

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