scholarly journals Ginkgo biloba L. Responds to Red and Blue Light: Via Phenylpropanoid and Flavonoid Biosynthesis Pathway

Forests ◽  
2021 ◽  
Vol 12 (8) ◽  
pp. 1079
Author(s):  
Lei Zhang ◽  
Gaiping Wang ◽  
Guibin Wang ◽  
Fuliang Cao
Keyword(s):  
Blue Light ◽  
Ginkgo Biloba ◽  
Metabolic Pathways ◽  
Transcriptome Sequencing ◽  
Molecular Mechanisms ◽  
Light Quality ◽  
Red Light ◽  
Enrichment Analysis ◽  
Flavonoid Biosynthesis ◽  
Sequencing Analysis

Light quality is a key environmental factor affecting plant growth and development. In this study, RNA-seq technology was used to explore the molecular mechanisms of ginkgo metabolism under different monochromatic lights. Leaves were used for transcriptome sequencing analysis after being irradiated by red, blue, and white LED lights. After treatment, 2040 differentially expressed genes (DEGs) were identified. Gene Ontology (GO) analysis showed that the DEGs were annotated into 49 terms. Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis showed that 736 DEGs were enriched in 100 metabolic pathways, and 13 metabolic pathways were significantly enriched, especially ‘phenylpropanoid biosynthesis’ and ‘flavonoid biosynthesis’. Further analysis of DEGs expression in the two pathways showed that Ginkgo biloba adapts to blue light mainly by promoting the expression of GbFLS to synthesize quercetin, kaempferol, and myncetin, and adapts to red light by promoting the expression of GbDFR to synthesize leucocyanidin. Nine DEGs were randomly selected for qRT-PCR verification, and the gene expression results were consistent with that of transcriptome sequencing. In conclusion, this study is the first to explore the molecular mechanism of ginkgo in response to different monochromatic lights, and it will lay a foundation for the research and application of light quality in the cultivation of leaf-use G. biloba.

scholarly journals Novel Functional Genes Involved in Transdifferentiation of Canine ADMSCs Into Insulin-Producing Cells, as Determined by Absolute Quantitative Transcriptome Sequencing Analysis

2021 ◽  
Vol 9 ◽  
Author(s):  
Pengxiu Dai ◽  
Jiakai Li ◽  
Yijing Chen ◽  
Luwen Zhang ◽  
Xinke Zhang ◽  
...  
Keyword(s):  
Metabolic Pathways ◽  
Transcriptome Sequencing ◽  
Enrichment Analysis ◽  
Sequencing Analysis ◽  
Insulin Producing Cells ◽  
High Maturity ◽  
Potential Resource ◽  
Treatment Of Diabetes ◽  
Upregulated Genes ◽  
Future Work

The transdifferentiation of adipose-derived mesenchymal stem cells (ADMSCs) into insulin-producing cells (IPCs) is a potential resource for the treatment of diabetes. However, the changes of genes and metabolic pathways on the transdifferentiation of ADMSCs into IPCs are largely unknown. In this study, the transdifferentiation of canine ADMSCs into IPCs was completed using five types of procedures. Absolute Quantitative Transcriptome Sequencing Analysis was performed at different stages of the optimal procedure. A total of 60,151 transcripts were obtained. Differentially expressed genes (DEGs) were divided into five groups: IPC1 vs. ADSC (1169 upregulated genes and 1377 downregulated genes), IPC2 vs. IPC1 (1323 upregulated genes and 803 downregulated genes), IPC3 vs. IPC2 (722 upregulated genes and 680 downregulated genes), IPC4 vs. IPC3 (539 upregulated genes and 1561 downregulated genes), and Beta_cell vs. IPC4 (2816 upregulated genes and 4571 downregulated genes). The gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis of DEGs revealed that many genes and signaling pathways that are essential for transdifferentiation. Hnf1B, Dll1, Pbx1, Rfx3, and Foxa1 were screened out, and the functions of five genes were verified further by overexpression and silence. Foxa1, Pbx1, and Rfx3 exhibited significant effects, can be used as specific key regulatory factors in the transdifferentiation of ADMSCs into IPCs. This study provides a foundation for future work to understand the mechanisms of the transdifferentiation of ADMSCs into IPCs and acquire IPCs with high maturity.

Antagonistic actions of Arabidopsis cryptochromes and phytochrome B in the regulation of floral induction

Development ◽  
1999 ◽  
Vol 126 (10) ◽  
pp. 2073-2082 ◽  
Author(s):  
T.C. Mockler ◽  
H. Guo ◽  
H. Yang ◽  
H. Duong ◽  
C. Lin
Keyword(s):  
Flowering Time ◽  
Blue Light ◽  
Molecular Mechanisms ◽  
Light Quality ◽  
Floral Induction ◽  
Red Light ◽  
Floral Initiation ◽  
Sensitive Phase ◽  
Light Inhibition

The Arabidopsis photoreceptors cry1, cry2 and phyB are known to play roles in the regulation of flowering time, for which the molecular mechanisms remain unclear. We have previously hypothesized that phyB mediates a red-light inhibition of floral initiation and cry2 mediates a blue-light inhibition of the phyB function. Studies of the cry2/phyB double mutant provide direct evidence in support of this hypothesis. The function of cryptochromes in floral induction was further investigated using the cry2/cry1 double mutants. The cry2/cry1 double mutants showed delayed flowering in monochromatic blue light, whereas neither monogenic cry1 nor cry2 mutant exhibited late flowering in blue light. This result suggests that, in addition to the phyB-dependent function, cry2 also acts redundantly with cry1 to promote floral initiation in a phyB-independent manner. To understand how photoreceptors regulate the transition from vegetative growth to reproductive development, we examined the effect of sequential illumination by blue light and red light on the flowering time of plants. We found that there was a light-quality-sensitive phase of plant development, during which the quality of light exerts a profound influence on flowering time. After this developmental stage, which is between approximately day-1 to day-7 post germination, plants are committed to floral initiation and the quality of light has little effect on the flowering time. Mutations in either the PHYB gene or both the CRY1 and CRY2 genes resulted in the loss of the light-quality-sensitive phase manifested during floral development. The commitment time of floral transition, defined by a plant's sensitivity to light quality, coincides with the commitment time of inflorescence development revealed previously by a plant's sensitivity to light quantity - the photoperiod. Therefore, the developmental mechanism resulting in the commitment to flowering appears to be the direct target of the antagonistic actions of the photoreceptors.

scholarly journals Transcriptomic and Metabolic Profiling of High-Temperature Treated Storage Roots Reveals the Mechanism of Saccharification in Sweetpotato (Ipomoea batatas (L.) Lam.)

2021 ◽  
Vol 22 (13) ◽  
pp. 6641
Author(s):  
Chen Li ◽  
Meng Kou ◽  
Mohamed Hamed Arisha ◽  
Wei Tang ◽  
Meng Ma ◽  
...  
Keyword(s):  
High Temperature ◽  
Metabolic Pathways ◽  
Transcriptome Sequencing ◽  
Ipomoea Batatas ◽  
Sequencing Analysis ◽  
Storage Roots ◽  
Metabolic Analysis ◽  
Cooking Process

The saccharification of sweetpotato storage roots is a common phenomenon in the cooking process, which determines the edible quality of table use sweetpotato. In the present study, two high saccharified sweetpotato cultivars (Y25, Z13) and one low saccharified cultivar (X27) in two growth periods (S1, S2) were selected as materials to reveal the molecular mechanism of sweetpotato saccharification treated at high temperature by transcriptome sequencing and non-targeted metabolome determination. The results showed that the comprehensive taste score, sweetness, maltose content and starch change of X27 after steaming were significantly lower than those of Y25 and Z13. Through transcriptome sequencing analysis, 1918 and 1520 differentially expressed genes were obtained in the two periods of S1 and S2, respectively. Some saccharification-related transcription factors including MYB families, WRKY families, bHLH families and inhibitors were screened. Metabolic analysis showed that 162 differentially abundant metabolites related to carbohydrate metabolism were significantly enriched in starch and sucrose capitalization pathways. The correlation analysis between transcriptome and metabolome confirmed that the starch and sucrose metabolic pathways were significantly co-annotated, indicating that it is a vitally important metabolic pathway in the process of sweetpotato saccharification. The data obtained in this study can provide valuable resources for follow-up research on sweetpotato saccharification and will provide new insights and theoretical basis for table use sweetpotato breeding in the future.

scholarly journals Studies on trans-sutural distraction osteogenesis-related genes based on transcriptome sequencing

2020 ◽  
Author(s):  
Baicheng Wang ◽  
Hongyu Xue ◽  
Haizhou Tong ◽  
Peiyang Zhang ◽  
Mei Wang ◽  
...  
Keyword(s):  
Cell Cycle ◽  
Distraction Osteogenesis ◽  
Transcriptome Sequencing ◽  
Molecular Mechanisms ◽  
Sequencing Analysis ◽  
Sprague Dawley ◽  
Down Regulation ◽  
Important Approach ◽  
Immune Pathways ◽  
Experimental Group

AbstractTrans-sutural distraction osteogenesis (TSDO) is an important approach to improve mid-face hypoplasia. In recent years, many studies have been carried out on physical mechanisms of TSDO; however, it’s specific cytological and molecular mechanisms are still unclear. In this study, we performed transcriptome sequencing analysis in Sprague Dawley rats at 1 and 2 weeks after suture osteogenesis and compared RNA expression levels between experimental and control groups. At one week, enrichment pathways were mainly up-regulated in muscle- and bone-related pathways. By contrast, pathways of the immune system showed a state of inhibition and down-regulation, especially for B cells; the main immune pathways showed significant down-regulation. However, two weeks later, the experimental group showed positive up-regulation of the pathways related to DNA synthesis and replication, cell cycle, and chromosome replication. At the same time, the immune pathways that were down-regulated in the first week were up-regulated in the second week. In other words, the up-regulated muscle- and bone-related pathways show opposite trends. The expression of bone- and myogenesis-related transcriptome was up-regulated and the immune-related pathways were down-regulated in the experimental group at 1 week. At 2 weeks, the pathways related to bone- and muscle were down-regulated, while those related to cell cycle regulation and DNA replication were up-regulated. These results suggest that musculoskeletal-related molecules may play an important role during suture osteogenesis at 1 week, and immune regulation may be involved in this process; however, at 2 weeks, molecules related to cell proliferation and replication may be a major role.

scholarly journals Identification and expression of the trehalose-6-phosphate synthase gene family members in tomato exposed to different light spectra

2017 ◽  
Vol 69 (1) ◽  
pp. 93-101
Author(s):  
Zexiong Chen ◽  
Juan Lou
Keyword(s):  
Plant Growth ◽  
Blue Light ◽  
White Light ◽  
Growth And Development ◽  
Light Quality ◽  
Red Light ◽  
Floral Transition ◽  
Stem Length ◽  
Pcr Analysis ◽  
Phosphate Synthase

Light is the source of energy for plants. Light wavelengths, densities and irradiation periods act as signals directing morphological and physiological characteristics during plant growth and development. To evaluate the effects of light wavelengths on tomato growth and development, Solanum lycopersicum (cv. micro-Tom) seedlings were exposed to different light-quality environments, including white light and red light supplemented with blue light (at ratios of 3:1 and 8;1, respectively). Tomatoes grown under red light supplemented with blue light displayed significantly shorter stem length, a higher number of flower buds and rate of fruit set, but an extremely late flowering compared to white-light-grown plants. To illustrate the mechanism underlying the inhibition of stem growth and floral transition mediated by red/blue light, 10 trehalose-6-phosphate synthase (TPS) genes were identified in tomato, and bioinformatics analysis was performed. qRT-PCR analysis showed that SlTPSs were expressed widely throughout plant development and SlTPS1 was expressed at extremely high levels in stems and buds. Further analysis of several flowering-associated genes and microRNAs showed that the expressions of SlTPS1, SlFT and miR172 were significantly downregulated in tomato grown under red and blue light compared with those grown under white light, whereas miR156 transcript levels were increased. A regulatory model underlying vegetative growth and floral transition regulated by light qualities is presented. Our data provide evidence that light quality strongly affects plant growth and phase transition, most likely via the TPS1-T6P signaling pathway.

scholarly journals Interactive Effects of Light Quality and Temperature on Arabidopsis Growth and Immunity

2020 ◽  
Vol 61 (5) ◽  
pp. 933-941
Author(s):  
Xiaoying Liu ◽  
Chunmei Xue ◽  
Le Kong ◽  
Ruining Li ◽  
Zhigang Xu ◽  
...  
Keyword(s):  
Disease Resistance ◽  
Blue Light ◽  
Light Quality ◽  
Red Light ◽  
Complex Interaction ◽  
Hypocotyl Elongation ◽  
Interactive Effects ◽  
Phytochrome B ◽  
Light Conditions ◽  
Effects Of Temperature

Abstract We report here the interactive effects of three light qualities (white, red and blue) and three growth temperatures (16�C, 22�C and 28�C) on rosette growth, hypocotyl elongation and disease resistance in Arabidopsis thaliana. While an increase in temperature promotes hypocotyl elongation irrespective of light quality, the effects of temperature on rosette growth and disease resistance are dependent on light quality. Maximum rosette growth rate under white, red and blue light are observed at 28�C, 16�C and 22�C, respectively. The highest disease resistance is observed at 16�C under all three light conditions, but the highest susceptibility is observed at 28�C for white light and 22�C for red and blue light. Interestingly, rosette growth is inhibited by phytochrome B (PHYB) under blue light at 28�C and by cryptochromes (CRYs) under red light at 16�C. In addition, disease resistance is inhibited by PHYB under blue light and promoted by CRYs under red light. Therefore, this study reveals a complex interaction between light and temperature in modulating rosette growth and disease resistance as well as the contribution of PHYB and CRY to disease resistance.

scholarly journals Temporospatial Flavonoids Metabolism Variation in Ginkgo biloba Leaves

2020 ◽  
Vol 11 ◽  
Author(s):  
Ying Guo ◽  
Tongli Wang ◽  
Fang-Fang Fu ◽  
Yousry A. El-Kassaby ◽  
Guibin Wang
Keyword(s):  
Ginkgo Biloba ◽  
Molecular Mechanisms ◽  
Developmental Stages ◽  
Early Stage ◽  
Sunshine Duration ◽  
Flavonoid Biosynthesis ◽  
Flavonoid Glycosides ◽  
Biosynthesis Pathway ◽  
Flavonoids Biosynthesis ◽  
Flavonoid Biosynthesis Pathway

Ginkgo (Ginkgo biloba L.) is a high-value medicinal tree species characterized by its flavonoids beneficial effects that are abundant in leaves. We performed a temporospatial comprehensive transcriptome and metabolome dynamics analyses of clonally propagated Ginkgo plants at four developmental stages (time: May to August) across three different environments (space) to unravel leaves flavonoids biosynthesis variation. Principal component analysis revealed clear gene expression separation across samples from different environments and leaf-developmental stages. We found that flavonoid-related metabolism was more active in the early stage of leaf development, and the content of total flavonoid glycosides and the expression of some genes in flavonoid biosynthesis pathway peaked in May. We also constructed a co-expression regulation network and identified eight GbMYBs and combining with other TF genes (3 GbERFs, 1 GbbHLH, and 1 GbTrihelix) positively regulated the expression of multiple structural genes in the flavonoid biosynthesis pathway. We found that part of these GbTFs (Gb_11316, Gb_32143, and Gb_00128) expressions was negatively correlated with mean minimum temperature and mean relative humidity, while positively correlated with sunshine duration. This study increased our understanding of the molecular mechanisms of flavonoids biosynthesis in Ginkgo leaves and provided insight into the proper production and management of Ginkgo commercial plantations.

scholarly journals Growth and Acclimation of In Vitro-Propagated M9 Apple Rootstock Plantlets under Various Visible Light Spectrums

Agronomy ◽  
2020 ◽  
Vol 10 (7) ◽  
pp. 1017
Author(s):  
Guem-Jae Chung ◽  
Jin-Hui Lee ◽  
Myung-Min Oh
Keyword(s):  
Stomatal Conductance ◽  
Blue Light ◽  
Photosynthetic Rate ◽  
Light Quality ◽  
Red Light ◽  
High Ratio ◽  
The Other ◽  
Ex Vitro ◽  
Apple Rootstock

This study aimed to explore the suitable light quality condition for ex vitro acclimation of M9 apple plantlets. Light quality treatments were set as followed; monochromatic LEDs (red (R), green (G), blue (B)) and polychromatic LEDs (R:B = 7:3, 8:2 and 9:1; R:G:B = 6:1:3, 7:1:2 and 8:1:1). Plant height of R, R9B1, and R8G1B1 treatments were significantly higher than the other treatments. The number of leaves and SPAD value of B were significantly higher than the other treatments. Root fresh weights of R9B1 and R7G1B2 treatments showed an increase of at least 1.7-times compared to R, G and R8B2. R8G1B1 accumulated higher starch contents than the other treatments. Photosynthetic rate of R9B1 and R8B2 were significantly higher than the other treatments. In terms of stomatal conductance and transpiration rate, treatments with high blue ratio such as B, R7B3 had higher values. Rubisco concentration was high in R and B among monochromatic treatments. In conclusion, red light was effective to increase photosynthetic rate and biomass and blue light increased chlorophyll content and stomatal conductance. Therefore, for R9B1 and R8G1B1, a mixture of high ratio of red light with a little blue light would be proper for the acclimation of in vitro-propagated apple rootstock M9 plantlets to an ex vitro environment.

scholarly journals Influence of light quality on Chlorella growth, photosynthetic pigments and high-valued products accumulation in coastal saline-alkali leachate

2021 ◽  
Author(s):  
Xiao-ya Liu ◽  
Yu Hong ◽  
Wen-ping Gu
Keyword(s):  
Blue Light ◽  
Photosynthetic Pigments ◽  
Lipid Content ◽  
Light Quality ◽  
Specific Growth ◽  
Starch Content ◽  
Red Light ◽  
Monochromatic Light ◽  
Algal Density ◽  
Chlorella Sp

Abstract Using saline-alkali leachate to cultivate microalgae is an effective way to realize the utilization of wastewater and alleviate the shortage of water resources. Light source is usually used as an optimized parameter to further improve the cultivation efficiency of microalgae. In this work, the influence of light qualities on the growth and high-valued substances accumulation of Chlorella sp. HQ in coastal saline-alkali leachate were investigated. The specific growth rate of Chlorella in coastal saline-alkali leachate was 0.27–0.60 d−1. At the end of cultivation, the algal density under blue light reached 8.71 ± 0.15 × 107 cells·mL−1, which was significantly higher than the other light groups. The lipid content in the biomass was 29.31–62.95%, and the highest lipid content and TAGs content were obtained under red light and blue-white mixed light, respectively. Percentages of total chlorophylls (0.81–1.70%) and carotenoids (0.08–0.25%) were obtained in the final biomass of the coastal saline-alkali leachate. In addition, the contents of photosynthetic pigments and three high-valued products under mixed light were higher than those of monochromatic light, and the protein, total sugar and starch content under blue-red mixed light was 1.52–3.76 times, 1.54–3.68 times and 1.06–3.35 times of monochromatic blue light and red light, respectively.

scholarly journals Transcriptome Analysis Reveals Candidate Genes Involved in Light-Induced Primordium Differentiation in Pleurotus eryngii

2021 ◽  
Vol 23 (1) ◽  
pp. 435
Author(s):  
Dou Ye ◽  
Fang Du ◽  
Qingxiu Hu ◽  
Yajie Zou ◽  
Xue Bai
Keyword(s):  
Blue Light ◽  
High Throughput Sequencing ◽  
Expression Profiles ◽  
Red Light ◽  
Enrichment Analysis ◽  
Mapk Signaling ◽  
Pleurotus Eryngii ◽  
Light Stimulation ◽  
Edible Fungus ◽  
Oxidative Phosphorylation Pathway

Pleurotus eryngii, a highly valued edible fungus, is one of the major commercially cultivated mushrooms in China. The development of P. eryngii, especially during the stage of primordium differentiation, is easily affected by light. However, the molecular mechanism underlying the response of primordium differentiation to light remains unknown. In the present study, primordium expression profiles under blue-light stimulation, red-light stimulation, and exposure to darkness were compared using high-throughput sequencing. A total of 16,321 differentially expressed genes (DEGs) were identified from three comparisons. GO enrichment analysis showed that a large number of DEGs were related to light stimulation and amino acid biosynthesis. KEGG analyses demonstrated that the MAPK signaling pathway, oxidative phosphorylation pathway, and RNA transport were most active during primordium differentiation. Furthermore, it was predicted that the blue-light photoreceptor WC-1 and Deoxyribodipyrimidine photolyase PHR play important roles in the primordium differentiation of P. eryngii. Taken together, the results of this study provide a speculative mechanism that light induces primordium differentiation and a foundation for further research on fruiting body development in P. eryngii.

Sign in / Sign up

Export Citation Format

Share Document