scholarly journals π‑Extended Boron Difluoride [NՈNBF2] Complex, Crystal Structure, Liquid NMR, Spectral, XRD/HSA Interactions: A DFT and TD-DFT Study

Crystals ◽  
2021 ◽  
Vol 11 (6) ◽  
pp. 606
Author(s):  
Abdulrahman A. Alsimaree ◽  
Nawaf. I. Alsenani ◽  
Omar Mutlaq Alatawi ◽  
Abeer A. AlObaid ◽  
Julian Gary Knight ◽  
...  
Keyword(s):  
Density Functional ◽  
Population Analysis ◽  
Atomic Charge ◽  
One Pot ◽  
Tetrahedral Geometry ◽  
19F Nmr Spectra ◽  
Structural Bond ◽  
Reactivity Descriptors ◽  
Model Complex ◽  
Td Dft

The novel tetrahedral 10-(4-carboxyphenyl)-2,8-diethyl-5,5-difluoro-1,3,7,9-tetramethyl- 5H-di-pyrrolo[1,2-c:2',1'-f][1,3,2]diazaborinin-4-ium-5-uide [NՈNBF2] BODIPY complex was prepared in a very good yield and via one-pot synthesis. The desired [NՈNBF2] has been used as a model complex for XRD/HSA interactions and DFT/B3LYP/6-311G(d,p) computations. The tetrahedral geometry around the boron center was demonstrated by DFT optimization and XRD-crystallography. The 1H, 11B, and 19F-NMR spectra were used also to support the high symmetrical BODIPY via π‑extended phenomena. Moreover, the values of the DFT-calculated structural bond lengths/angles and DFT-IR were matched to the corresponding experimental XRD and IR parameters, respectively. The crystal lattice interactions were correlated to Hirshfeld surface analysis (HSA) calculations. Calculations of the Mulliken Atomic Charge (MAC), Natural Population Analysis (NPA), Global reactivity descriptors (GRD), and Molecular Electrostatic Potential (MEP) quantum parameters were performed to support the XRD/HSA interactions result. Analysis of the predicted Density of States (DOS), molecular orbital, and time-dependent density functional theory (TD-DFT) calculations have been combined to explain the experimental UV-vis spectra and electron transfer behavior in [NՈNBF2] complex using MeOH and other four solvents.

scholarly journals Exo⇔Endo Isomerism, MEP/DFT, XRD/HSA-Interactions of 2,5-Dimethoxybenzaldehyde: Thermal, 1BNA-Docking, Optical, and TD-DFT Studies

Molecules ◽  
2020 ◽  
Vol 25 (24) ◽  
pp. 5970
Author(s):  
Nabil Al-Zaqri ◽  
Mohammed Suleiman ◽  
Anas Al-Ali ◽  
Khaled Alkanad ◽  
Karthik Kumara ◽  
...  
Keyword(s):  
Density Functional ◽  
Energy Gap ◽  
Structural Parameters ◽  
Population Analysis ◽  
Xrd Analysis ◽  
X Ray Diffraction ◽  
Optical Energy Gap ◽  
Functional Theory ◽  
Reactivity Descriptors ◽  
Td Dft

The exo⇔endo isomerization of 2,5-dimethoxybenzaldehyde was theoretically studied by density functional theory (DFT) to examine its favored conformers via sp2–sp2 single rotation. Both isomers were docked against 1BNA DNA to elucidate their binding ability, and the DFT-computed structural parameters results were matched with the X-ray diffraction (XRD) crystallographic parameters. XRD analysis showed that the exo-isomer was structurally favored and was also considered as the kinetically preferred isomer, while several hydrogen-bonding interactions detected in the crystal lattice by XRD were in good agreement with the Hirshfeld surface analysis calculations. The molecular electrostatic potential, Mulliken and natural population analysis charges, frontier molecular orbitals (HOMO/LUMO), and global reactivity descriptors quantum parameters were also determined at the B3LYP/6-311G(d,p) level of theory. The computed electronic calculations, i.e., TD-SCF/DFT, B3LYP-IR, NMR-DB, and GIAO-NMR, were compared to the experimental UV–Vis., optical energy gap, FTIR, and 1H-NMR, respectively. The thermal behavior of 2,5-dimethoxybenzaldehyde was also evaluated in an open atmosphere by a thermogravimetric–derivative thermogravimetric analysis, indicating its stability up to 95 °C.

scholarly journals Computational Exploration of Spectroscopic and Hydrogen Bonding Analysis of Direct Orange 26 Dye in Combination with Experimental and TD-DFT Calculations.

2021 ◽  
Author(s):  
Mohamed A. Zayed ◽  
Mahmoud A Noamaan ◽  
Zahraa A.M Abo-Ayad
Keyword(s):  
Hydrogen Bonding ◽  
Dft Calculations ◽  
Density Functional ◽  
Chemical Reactivity ◽  
Population Analysis ◽  
Calculated Data ◽  
Vibrational Properties ◽  
Conceptual Density Functional Theory ◽  
Reactivity Descriptors ◽  
Td Dft

Abstract The importance of this study stems from, it concentrates on new approach applying both practical and theoretical aspects to study structure of Direct orange dye 26 (DO-26) as an important dye widely used for dyeing of cotton or viscose for red orange direct printing. It also can be used for silk, wool, polyvinyl alcohol, polyamide fiber fabric and pulp dyeing. It proficiently compare practical with theoretical results of structural identification of the given important dye, via carful inspection of various phenomena detected in its two symmetrical arms around urea center. Direct orange dye 26 (DO-26) structure has been studied applying both practical spectroscopic and theoretical investigations. DFT-B3LYP/6-311++G(d,p) calculations are performed to investigate its structure, and the electronic vibrational properties. Correlation is found between experimental and calculated data. An intra-molecular hydrogen bonding interaction had been detected and characterized in dye skeleton using Atoms-in-molecule analysis employment. The hydrogen bonding present in the dye structure affecting its vibrational properties had been discussed. Natural population analysis like HOMO and LUMO and high quality molecular electrostatic potential plots along with various electronics had been presented at the same level of theory. Chemical reactivity descriptors from conceptual density functional theory point of view, structure activity relationship descriptor were obtained. The experimental UV/Visible and FT-IR spectral data of the dye DO-26 (D1) had been presented. These data had been supported by TD-DFT calculations to simulate the experimental spectra with computing the natural transition orbitals (NTO) and the orbital composition. The variation of charge transfer length (Δr) and variation in its dipole moment with respect to ground state (ΔmCT) had been computed in order to study the charge redistribution due to the excitations. Actually there is a problem that, degradation of this dye in wastewater by different techniques leads to various unknown fragments but on using theoretical possibilities it can be expected what happened in practical work.

scholarly journals One-Pot Microwave-Assisted Synthesis of Water-Soluble Pyran-2,4,5-triol Glucose Amine Schiff Base Derivative: XRD/HSA Interactions, Crystal Structure, Spectral, Thermal and a DFT/TD-DFT

Crystals ◽  
2021 ◽  
Vol 11 (2) ◽  
pp. 117
Author(s):  
Yousef Hijji ◽  
Rajeesha Rajan ◽  
Hamdi Ben Yahia ◽  
Said Mansour ◽  
Abdelkader Zarrouk ◽  
...  
Keyword(s):  
Schiff Base ◽  
Molecular Orbital ◽  
Density Functional ◽  
Condensation Reaction ◽  
3D Structure ◽  
Water Soluble ◽  
Microwave Assisted Synthesis ◽  
One Pot ◽  
Microwave Assisted ◽  
Td Dft

The(3R,4R,6R)-3-(((E)-2-hydroxybenzylidene)amino)-6-(hydroxymethyl)tetrahydro-2H-pyran-2,4,5-triol water-soluble Glucose amine Schiff base (GASB-1) product was made available by condensation of 2-hydroxybenzaldehyde with (3R,6R)-3-amino-6-(hydroxymethyl)-tetra-hydro-2H-pyran-2,4,5-triol under mono-mode microwave heating. A one-pot 5-minute microwave-assisted reaction was required to complete the condensation reaction with 90% yield and without having byproducts. The 3D structure of GASB-1 was solved from single crystal X-ray diffraction data and computed by DFT/6-311G(d,p). The Hirshfeld surface analysis (HSA), molecular electronic potential (MEP), Mulliken atomic charge (MAC), and natural population analysis (NPA) were performed. The IR and UV-Vis spectra were matched to their density functional theory (DFT) relatives and the thermal behavior was resolved in an open-room condition via thermogravimetry/Derivative thermogravimetry (TG/DTG) and differential scanning calorimetry (DSC). The highest occupied molecular orbital/lowest unoccupied molecular orbital (HOMO/LUMO), density of state (DOS), and time-dependence TD-DFT computations were correlated to the experimental electron transfer in water and acrylonitrile solvents.

scholarly journals Direct Orange 26 Dye Environmental Degradation: Experimental Studies (UV, Mass and Thermal) in Comparison With Computational Exploration Hydrogen Bonding Analysis of TD-DFT Calculations

2021 ◽  
Author(s):  
Zahraa A. M. Abo-Ayad ◽  
Mohamed A. Zayed ◽  
Mahmoud A Noamaan
Keyword(s):  
Hydrogen Bonding ◽  
Dft Calculations ◽  
Density Functional ◽  
Chemical Reactivity ◽  
Population Analysis ◽  
Experimental Studies ◽  
Calculated Data ◽  
Structure Stability ◽  
Vibrational Properties ◽  
Td Dft

Abstract The importance of this study stems from, it concentrates on new approach applying both practical and theoretical aspects to study structure stability of Direct orange dye 26 (DO26) as an important dye widely used for dyeing of cotton or viscose for red orange direct printing. The stable dyes are so difficult to remove, decolorized and/ or degrade, in pure solution or in wastewater samples, without using powerful removal environmental techniques electrochemical oxidations suggest and efficiently used in our Lab. Therefore, it is very important to compare between practical thermal and mass results as efficient techniques in studying dye stability, in comparison with theoretical results using Gaussian program for structural stability identification of DO26 dye, via careful inspection of various phenomena detected in its two symmetrical arms around urea center. Direct orange dye 26 (DO26) structure has been studied applying both practical spectroscopic and theoretical investigations. DFT-B3LYP/6-311++G(d,p) calculations and the electronic vibrational properties are performed to investigate its structure stability and consequently its degradation and removal from its environmental media. Correlation is found between experimental and calculated data. An intra-molecular hydrogen bonding interaction had been detected and characterized in dye skeleton. The hydrogen bonding present in the dye structure affecting its vibrational properties had been discussed. Natural population analysis like HOMO and LUMO and high quality molecular electrostatic potential plots along with various electronics had been presented at the same level of theory. Chemical reactivity descriptors from conceptual density functional theory point of view, structure activity relationship descriptor were obtained. The experimental UV/Visible, FT-IR, mass and GC-mass spectral data of the dye DO26 (D1) had been presented. These data had been supported by TD-DFT calculations to simulate the experimental spectra with computing the natural transition orbitals (NTO) and the orbital composition. The variation of charge transfer length (Δr) and variation in its dipole moment with respect to ground state (ΔmCT) had been computed in order to study the charge redistribution due to the excitations. Actually there is a problem that, degradation of this dye in wastewater by different techniques leads to various unknown fragments but on using theoretical possibilities it can be expected what happened in practical work.

Investigation of charge transfer complexes formed between (S, S)-bis-N,N-sulfonyl bis-L-phenylalanine dimethylester donor with tetracyanoethylene and chloranil as π-acceptors: Experimental and DFT studies

2016 ◽  
Vol 15 (01) ◽  
pp. 1650009 ◽  
Author(s):  
Messaouda Mohamdi ◽  
Nadjia Bensouilah ◽  
Mohamed Abdaoui
Keyword(s):  
Charge Transfer ◽  
Density Functional ◽  
Population Analysis ◽  
Electronic Spectroscopy ◽  
Experimental Studies ◽  
Spectrophotometric Titration ◽  
Charge Transfer Complexes ◽  
Geometrical Structures ◽  
Functional Theory ◽  
Td Dft

Two novel charge transfer complexes CTC ([D[Formula: see text]TCNE] and [D[Formula: see text]CHL] : D [Formula: see text] (S, S)-bis-N,N-sulfonyl bis-L-phenylalanine dimethylester; TCNE [Formula: see text] Tetracyanoethylene; CHL [Formula: see text] Chloranil) were synthesized and characterized by elemental analysis: Electronic absorption, spectrophotometric titration, IR. The obtained results indicate the formation of 1:1 for both complexes. The experimental studies were complemented by quantum chemical calculations at DFT/CAM-B3LYP level of theory. Optimized geometrical structures, the electronic spectroscopy, excited-state properties and the descriptions of frontier molecular orbitals were computed and discussed by time-dependent density functional theory (TD-DFT). In addition, vibrational frequency calculations, the natural population analysis (NPA) confirms the presence of intermolecular interactions and natural bonding orbitals (NBO) calculation was carried out in order to elucidate the interactions between TCNE [Formula: see text]-acceptor and donor molecule.

scholarly journals DFT/TD-DFT study on spectroscopic properties of zinc(II), nickel(II), and palladium(II) metal complexes with a thiourea derivative

2016 ◽  
Vol 81 (11) ◽  
pp. 1263-1272 ◽  
Author(s):  
Xin Wang ◽  
Jieqiong Li ◽  
Li Wang ◽  
Wenpeng Wu ◽  
Zheng Du ◽  
...  
Keyword(s):  
Density Functional Theory ◽  
Metal Complexes ◽  
Density Functional ◽  
Spectroscopic Properties ◽  
Tetrahedral Geometry ◽  
Functional Theory ◽  
Coordination Environment ◽  
Square Planar ◽  
Td Dft ◽  
Shoulder Peak

The geometries, electronic structures, and spectral properties of three metal complexes Zn(C10H12N3OS)2 (1), Ni(C10H12N3OS)2 (2), and Pd(C10H12N3OS)2 (3) with N-(2-pyridinyl)morpholine-4-carbothioamide as a ligand are investigated by means of DFT (density functional theory) and TD-DFT (time-dependent density functional theory) methods. Complex 1 is a distorted tetrahedral geometry, while complexes 2 and 3 present a distorted square-planar coordination environment. In the simulated range, the spectrum of complex 1 has five obvious absorption peaks and one of them has the strongest intensity. The latter two complexes have one more absorption peak and shoulder peak with the similar intensity. Moreover, the strongest peaks of complexes 2.

A Computational Study on Structural and Electronic Properties of 1-(4-Chlorophenyl)-2-{[5-(4-Chlorophenyl)-1,2,3-Oxadiazol-2-Yl]Sulfanyl}Ethanone

2019 ◽  
Vol 892 ◽  
pp. 1-7
Author(s):  
Pek Lan Toh ◽  
Montha Meepripruk ◽  
Rosfayanti Rasmidi
Keyword(s):  
Density Functional ◽  
Computational Study ◽  
Molecular System ◽  
Population Analysis ◽  
Atomic Charge ◽  
Dft Method ◽  
Basis Sets ◽  
Hydrogen Atoms ◽  
Mulliken Population ◽  
Total Energies

In this paper, a first principle Density Functional Theory (DFT) method was conducted to study the geometric and electronic structures of 1-(4-chlorophenyl)-2-{[5-(4-chlorophenyl) -1,3,4-oxadiazol-2-yl] sulfanyl} ethanone, C16H10Cl2N2O2S. Using B3LYP level of theory with four basis sets of 6-31G**, 6-31++G**, 6-311G**, and 6-311++G**, the equilibrium structure of the title molecule was used to determine the total energies, Frontier molecular orbital’s energies, Mulliken atomic charges, and others. The computed findings present that four total energies obtained are close to each other, with the corresponding values of-59716.06 eV, -59709.42 eV, -59708.56 eV, and-59716.51 eV, respectively for B3LYP/6-31G**, B3LYP/6-31++G**, B3LYP/6-311G**, and B3LYP/6-311++G** methods. The calculated HOMO-LUMO energy gaps were predicted in the range of 4.001 eV - 4.089 eV. In this study, the atomic charge values of molecular system were also determined using Mulliken Population Analysis (MPA) approach. For DFT/B3LYP/6-311G** level of calculation, the computed results show that the atom of C8 accommodates the highest negative charge in the title molecular system. All the oxygen, nitrogen, and chloride atoms are having negative charges, whereas all the hydrogen atoms are having positive charges. In addition, the dipole moment value was also determined to be 1.4758 Debye by employing DFT/B3LYP/6-311G** level of theory.

scholarly journals Green Synthesis, SC-XRD, Non-Covalent Interactive Potential and Electronic Communication via DFT Exploration of Pyridine-Based Hydrazone

Crystals ◽  
2020 ◽  
Vol 10 (9) ◽  
pp. 778
Author(s):  
Akbar Ali ◽  
Muhammad Khalid ◽  
Saba Abid ◽  
Muhammad Nawaz Tahir ◽  
Javed Iqbal ◽  
...  
Keyword(s):  
Density Functional ◽  
Theoretical Calculations ◽  
Population Analysis ◽  
Spectroscopic Technique ◽  
Functional Theory ◽  
Reactivity Descriptors ◽  
Homo And Lumo ◽  
Valuable Compounds ◽  
Covalent Interactions

Ultrasound-based synthesis at room temperature produces valuable compounds greener and safer than most other methods. This study presents the sonochemical fabrication and characterization of a pyridine-based halogenated hydrazone, (E)-2-((6-chloropyridin-2-yl)oxy)-N′-(2-hydroxybenzylidene) acetohydrazide (HBPAH). The NMR spectroscopic technique was used to determine the structure, while SC-XRD confirmed its crystalline nature. Our structural studies revealed that strong, inter-molecular attractive forces stabilize this crystalline organic compound. Moreover, the compound was optimized at the B3LYP/6-311G(d,p) level using the Crystallographic Information File (CIF). Natural bonding orbital (NBO) and natural population analysis (NPA) were performed at the same level using optimized geometry. Time-dependent density functional theory (DFT) was performed at the B3LYP/6-311G (d,p) method to calculate the frontier molecular orbitals (FMOs) and molecular electrostatic potential (MEP). The global reactivity descriptors were determined using HOMO and LUMO energy gaps. Theoretical calculations based on the Quantum Theory of Atoms in Molecules (QT-AIM) and Hirshfeld analyses identified the non-covalent and covalent interactions of the HBPAH compound. Consequently, QT-AIM and Hirshfeld analyses agree with experimental results.

The Nature of S-N Bonding in Sulfonamides and Related Compounds: Insights into π-Bonding Contributions from Sulfur K-Edge XAS

2020 ◽  
Author(s):  
Tulin Okbinoglu ◽  
Pierre Kennepohl
Keyword(s):  
Density Functional ◽  
Chemical Properties ◽  
Functional Theory ◽  
Rotational Barriers ◽  
Td Dft ◽  
Nitrogen Bonds ◽  
X Ray Absorption ◽  
Related Compounds ◽  
And Chemical Properties

Molecules containing sulfur-nitrogen bonds, like sulfonamides, have long been of interest due to their many uses and chemical properties. Understanding the factors that cause sulfonamide reactivity is important, yet their continues to be controversy regarding the relevance of S-N π bonding in describing these species. In this paper, we use sulfur K-edge x-ray absorption spectroscopy (XAS) in conjunction with density functional theory (DFT) to explore the role of S<sub>3p</sub> contributions to π-bonding in sulfonamides, sulfinamides and sulfenamides. We explore the nature of electron distribution of the sulfur atom and its nearest neighbors and extend the scope to explore the effects on rotational barriers along the sulfur-nitrogen axis. The experimental XAS data together with TD-DFT calculations confirm that sulfonamides, and the other sulfinated amides in this series, have essentially no S-N π bonding involving S<sub>3p</sub> contributions and that electron repulsion and is the dominant force that affect rotational barriers.

Spectroscopic investigations and DFT studies of synthesized 4-acetamidophenyl 3,4,5-trimethoxybenzoate and 4-acetyl phenyl 3,4,5-trimethoxybenzoate a novel conjugate of gallic acid

2020 ◽  
Vol 17 ◽  
Author(s):  
Sangeeta Srivastava ◽  
Nadeem Ahmad Ansari ◽  
Sadaf Aleem
Keyword(s):  
Gallic Acid ◽  
Density Functional ◽  
Energy Gap ◽  
Basis Set ◽  
Major Constituent ◽  
Orbital Energy ◽  
Reactivity Descriptors ◽  
Homo And Lumo ◽  
Electrophilic Reactivity ◽  
Global And Local

: Gallic acid is abundantly found in amla (Phyllanthus emblica), a deciduous of the family phyllanthaceae. Gallic acid, the major constituent of the plant was methylated to 3,4,5 trimethoxy gallic acid, which then underwent steglich esterification first with paracetamol and then with 4-hydroxy acetophenone to yield 4-acetamidophenyl 3,4,5-trimethoxybenzoate and 4-acetyl phenyl 3,4,5-trimethoxybenzoate “respectively”. 1H NMR, 13C NMR, UV, FT-IR and mass spectroscopy were used to characterize the synthesized compounds. Density functional theory (B3YLP) using 6-31G (d,p) basis set have been used for quantum chemical calculations. AIM (Atom in molecule) approach depicted weak molecular interactions within the molecules whereas the reactive site and reactivity within the molecule were examined by global and local reactivity descriptors. The HOMO and LUMO energies and frontier orbital energy gap were calculated by time dependant DFT approach using IEFPCM model. Small value for HOMO–LUMO energy gap indicated that easier charge transfer occurs within compound 4. The nucleophilic and electrophilic reactivity were determined by MEP (molecular electrostatic potential) experiment. Polarizability, dipole moment, and first hyperpolarizability values were calculated to depict the NLO (nonlinear optical) property of both the synthesized compounds. The antimicrobial activity was also carried out and broad spectrum antibacterial activity against several strains of bacteria and certain unicellular fungi were exhibited by synthesized compound 3.

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