scholarly journals Genomic Characterization of Salmonella Minnesota Clonal Lineages Associated with Poultry Production in Brazil

Animals ◽  
2020 ◽  
Vol 10 (11) ◽  
pp. 2043
Author(s):  
Diéssy Kipper ◽  
Laura M. Carroll ◽  
Andrea K. Mascitti ◽  
André F. Streck ◽  
André S. K. Fonseca ◽  
...  
Keyword(s):  
Comparative Approach ◽  
Poultry Production ◽  
Effective Population ◽  
Production Chain ◽  
Antimicrobial Resistance Genes ◽  
Whole Genomes ◽  
Poultry Farms ◽  
Genetic Clusters ◽  
Genomic Characterization ◽  
Salmonella Serotype

Salmonella serotype Minnesota has been increasingly detected in Brazilian poultry farms and food products (chicken meat, eggs) in recent years. In addition, S. Minnesota isolates from poultry are generally resistant to several antibiotics and persistent in farm environments. The present study aimed to assess phylogenomic diversity of S. Minnesota isolates from the poultry production chain in Brazil. In total, 107 worldwide S. Minnesota whole genomes (including 12 from Brazil) were analyzed using a comparative approach. Phylogenetic analysis demonstrated two clades more related to poultry production in Brazil: S. Minnesota poultry lineages I and II (SM-PLI and SM-PLII). Phylodynamic analysis demonstrated that SM-PLI had a common ancestor in 1915, while SM–PLII originated circa 1971. SM-PLII encompassed a higher number of isolates and presented a recent increase in effective population size (mainly from 2009 to 2012). Plasmids IncA/C2 and ColRNA, antimicrobial resistance genes (aph(3′)-Ia, blaCMY-2, qnrB19, sul2, and tet(A)) and mainly a virulence genetic cluster (including the yersiniabactin operon) were detected in isolates from SM-PLI and/or SM-PLII. This study demonstrates the dissemination of two distinct S. Minnesota lineages with high resistance to antibiotics and important virulence genetic clusters in Brazilian poultry farms.

scholarly journals Phenotypic and Genotypic Characterization of Virulence Factors and Susceptibility to Antibiotics in Salmonella Infantis Strains Isolated from Chicken Meat: First Findings in Chile

Animals ◽  
2020 ◽  
Vol 10 (6) ◽  
pp. 1049
Author(s):  
Lisette Lapierre ◽  
Javiera Cornejo ◽  
Sebastián Zavala ◽  
Nicolás Galarce ◽  
Fernando Sánchez ◽  
...  
Keyword(s):  
Resistance Genes ◽  
Biofilm Formation ◽  
Virulence Genes ◽  
Antibiotic Resistance Genes ◽  
Virulence Gene ◽  
Chicken Meat ◽  
Poultry Production ◽  
Production Chain ◽  
Salmonella Serotype

Salmonella Infantis is a zoonotic pathogen that causes gastroenteritis in humans and animals, with poultry being its main reservoir. In Chile, there are no data to characterize S. Infantis strains in poultry production. In this study, 87 S. Infantis strains were isolated from chicken meat for sale in supermarkets in Santiago, Chile, and characterized according to their virulence genes, biofilm formation abilities, antibiotic susceptibility, and resistance genes. Through polymerase chain reaction or PCR, the strains were analyzed to detect the presence of 11 virulence genes, 12 antibiotic resistance genes, and integrase genes. Moreover, disc diffusion susceptibility to 18 antimicrobials and the ability to form biofilm in vitro were evaluated. Results demonstrated six different virulence gene profiles. Ninety-four percent of the strains were multi-resistant to antibiotics with weak biofilm formation abilities, 63.2% of the strains were broad spectrum β- lactam resistant, and the bla CTX-M-65 gene was amplified in 13 strains. Only 3.4% of the strains were fluoroquinolone resistant, and the qnrB gene was amplified in two strains. Colistin resistance was exhibited in 28.7% of the strains, but mrc genes were not amplified in any strain under study. The isolated S. Infantis strains are pathogenic and antibiotic multi-resistant, and thus, this Salmonella serotype should be under surveillance in the poultry food production chain with the aim of protecting public health.

Recent Evolution and Genomic Profile of Salmonella enterica Serovar Heidelberg Isolates from Poultry Flocks in Brazil

2021 ◽  
Author(s):  
Diéssy Kipper ◽  
Renato H. Orsi ◽  
Laura M. Carroll ◽  
Andrea K. Mascitti ◽  
André F. Streck ◽  
...  
Keyword(s):  
Salmonella Enterica ◽  
Health Concern ◽  
Recent Common Ancestor ◽  
Economic Losses ◽  
Multi Drug Resistance ◽  
Poultry Production ◽  
Production Chain ◽  
Genetic Characteristics ◽  
The World ◽  
Poultry Farms

Salmonella enterica Heidelberg is a serovar isolated from poultry-producing regions around the World. In Brazil, S. Heidelberg has been frequently detected in poultry flocks, slaughterhouses and chicken. The goal of the present study was to assess the population structure, recent temporal evolution and some important genetic characteristics of S. Heidelberg isolated from Brazilian poultry farms. Phylogenetic analysis of 68 S . Heidelberg genomes sequenced here and additional whole-genomes data from NCBI demonstrated that all isolates from the Brazilian poultry production chain clustered into a monophyletic group, here called S. Heidelberg Brazilian poultry lineage (SH-BPL). Bayesian analysis defined the time of the most recent common ancestor (tMRCA) as 2004 and the overall population size (N e ) constant until 2008, when a ∼10-fold N e increase was observed until circa 2013. SH-BPL presented at least two plasmids with replicons ColpVC ( n =68; 100%), IncX1 ( n =66; 97%), IncA/C2 ( n =65; 95.5%), ColRNAI ( n =43; 63.2%), IncI1 ( n =32; 47%), ColMG828, Col156, IncHI2A, IncHI2, IncQ1, IncX4, IncY and TrfA (each with n<4; <4% each). Antibiotic resistance genes were found, with high frequencies of fosA7 ( n =68; 100%), mdf A ( n =68; 100%), tet(34) ( n =68; 100%), sul2 ( n =64; 94.1%), blaCMY-2 ( n =56; 82.3%) and an overall multi-drug resistance (MDR) profile. Ten pathogenicity islands (SPI1-5, SPI9 and SPI11-14) and 139 virulence genes were also detected. SH-BPL profile was like other previous S. Heidelberg isolates from poultry around the world in the 1990s. In conclusion, the present study demonstrates the recent introduction (2004) and high level of dissemination of an MDR S. Heidelberg lineage in Brazilian poultry operations. IMPORTANCE S. Heidelberg is the most frequent serovar in several broiler farms from the main Brazilian poultry-producing regions. So avian-source foods (mainly chicken carcasses) commercialized in the country and exported to other continents are contaminated with this foodborne pathogen, generating several national and international economic losses. In addition, isolates of this serovar are usually resistant to antibiotics and can cause human invasive and septicemic infection, representing a public health concern. This study demonstrates the use of whole-genome sequencing (WGS) to obtain epidemiological information of one S. Heidelberg lineage highly spread among Brazilian poultry farms. This information will help to define biosecurity measures to control this important Salmonella serovar in Brazilian and worldwide poultry operations.

scholarly journals Molecular characterization of Salmonella enterica from poultry farms in Ilorin, north-central Nigeria

2021 ◽  
Vol 19 (3) ◽  
pp. 197-207
Author(s):  
I.A. Raufu ◽  
O.A. Ahmed ◽  
A. Aremu ◽  
J.A. Ameh ◽  
A. Ambali
Keyword(s):  
Antimicrobial Resistance ◽  
Salmonella Enterica ◽  
Virulence Genes ◽  
Occurrence Rate ◽  
Poultry Production ◽  
Potential Health ◽  
North Central ◽  
Antimicrobial Resistance Genes ◽  
Poultry Farms ◽  
Sequence Types

Poultry salmonellosis caused by Salmonella enterica is one of the most important bacterial diseases posing serious challenges to poultry production and human health worldwide. This study investigated the occurrence, serotypes, multilocus sequence types (MLSTs), antimicrobial resistance, plasmids, and 12 selected virulence genes of non-typhoidal Salmonella from poultry layer farms using whole-genome sequencing (WGS) methods. Two hundred cloaca swab samples were aseptically collected from four commercial poultry farms (layers) and transferred in sterile universal bottles on ice to the laboratory for analysis. Presumptive Salmonella isolates were detected with selective media and conventional biochemical tests. Serovars were confirmed by serotyping using the slide agglutination and Seqsero methods. Seven samples were positive for Salmonella consisting of Salmonella Typhimurium (S. Typhimurium) (n = 4), S. Albany (n = 2), and S. Agama with an occurrence rate of 3.5 % (7/200). Overall, 3 isolates showed the parC mutation expected not to cause resistance. Similarly, one S. Typhimurium isolate carried plasmid replicons of IncFIB(S)/IncFII(S) type without antimicrobial resistance genes. Three sequence types (STs); 19 (S. Typhimurium), 5317 (S. Albany), and 467 (S. Agama) were obtained. Salmonella Agama harboured 12 virulence genes, while S. Typhimurium and S. Albany harboured 11 virulence genes each. This study highlights the importance of S. Typhimurium, S. Albany, and S. Agama as major pathogens associated with poultry farms in Ilorin, north-central Nigeria. It equally provided baseline information on the serovar distribution, STs, resistance and the virulence gene profiles of all the serovars. Therefore, chickens can serve as a potential source of Salmonella transmission to humans, and this constitutes a potential health risk to the human population. Hence, there is a need for a specific Salmonella control program to be instituted as part of a national food safety strategy.

scholarly journals Survival and Control of Campylobacter in Poultry Production Environment

2021 ◽  
Vol 10 ◽  
Author(s):  
Mohammed J. Hakeem ◽  
Xiaonan Lu
Keyword(s):  
Control Method ◽  
Water Source ◽  
Poultry Production ◽  
Adaptive Responses ◽  
Production Environment ◽  
Molecular Physiology ◽  
Production Chain ◽  
Poultry Products ◽  
Poultry Farms ◽  
Strict Requirement

Campylobacter species are Gram-negative, motile, and non–spore-forming bacteria with a unique helical shape that changes to filamentous or coccoid as an adaptive response to environmental stresses. The relatively small genome (1.6 Mbp) of Campylobacter with unique cellular and molecular physiology is only understood to a limited extent. The overall strict requirement of this fastidious microorganism to be either isolated or cultivated in the laboratory settings make itself to appear as a weak survivor and/or an easy target to be inactivated in the surrounding environment of poultry farms, such as soil, water source, dust, surfaces and air. The survival of this obligate microaerobic bacterium from poultry farms to slaughterhouses and the final poultry products indicates that Campylobacter has several adaptive responses and/or environmental niches throughout the poultry production chain. Many of these adaptive responses remain puzzles. No single control method is yet known to fully address Campylobacter contamination in the poultry industry and new intervention strategies are required. The aim of this review article is to discuss the transmission, survival, and adaptation of Campylobacter species in the poultry production environments. Some approved and novel control methods against Campylobacter species throughout the poultry production chain will also be discussed.

scholarly journals Serotype distribution, antimicrobial susceptibility, antimicrobial resistance genes and virulence genes of Salmonella isolated from a pig slaughterhouse in Yangzhou, China

AMB Express ◽  
2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Quan Li ◽  
Jian Yin ◽  
Zheng Li ◽  
Zewei Li ◽  
Yuanzhao Du ◽  
...  
Keyword(s):  
Public Health ◽  
Antimicrobial Resistance ◽  
Resistance Genes ◽  
Antimicrobial Susceptibility ◽  
Virulence Genes ◽  
Multidrug Resistant ◽  
Resistance Rate ◽  
Economic Losses ◽  
Production Chain ◽  
Antimicrobial Resistance Genes

AbstractSalmonella is an important food-borne pathogen associated with public health and high economic losses. To investigate the prevalence and the characteristics of Salmonella in a pig slaughterhouse in Yangzhou, a total of 80 Salmonella isolates were isolated from 459 (17.43%) samples in 2016–2017. S. Derby (35/80, 43.75%) was the most prevalent, followed by S. Rissen (16/80, 20.00%) and S. Newlands (11/80, 13.75%). The highest rates of susceptibility were observed to cefoxitin (80/80, 100.0%) and amikacin (80/80, 100.0%), followed by aztreonam (79/80, 98.75%) and nitrofurantoin (79/80, 98.75%). The highest resistance rate was detected for tetracycline (65/80, 81.25%), followed by ampicillin (60/80, 75.00%), bactrim (55/80, 68.75%), and sulfisoxazole (54/80, 67.50%). Overall, 91.25% (73/80) of the isolates were resistant to at least one antibiotic, while 71.25% (57/80) of the isolate strains were multidrug resistant in the antimicrobial susceptibility tested. In addition, 86.36% (19/22) of the 22 antimicrobial resistance genes in the isolates were identified. Our data indicated that the resistance to certain antimicrobials was significantly associated, in part, with antimicrobial resistance genes. Furthermore, 81.25% (65/80) isolates harbored the virulence gene of mogA, of which 2 Salmonella Typhimurium isolates carried the mogA, spvB and spvC virulence genes at the same time. The results showed that swine products in the slaughterhouse were contaminated with multidrug resistant Salmonella commonly, especially some isolates carry the spv virulence genes. The virulence genes might facilitate the dissemination of the resistance genes to consumers along the production chain, suggesting the importance of controlling Salmonella during slaughter for public health.

scholarly journals Salmonella Bacteriophage Diversity According to Most Prevalent Salmonella Serovars in Layer and Broiler Poultry Farms from Eastern Spain

Animals ◽  
2020 ◽  
Vol 10 (9) ◽  
pp. 1456
Author(s):  
Sandra Sevilla-Navarro ◽  
Pablo Catalá-Gregori ◽  
Clara Marin
Keyword(s):  
Point Of View ◽  
Poultry Production ◽  
Poultry Products ◽  
Production Type ◽  
Poultry Farms ◽  
Commercial Poultry ◽  
Salmonella Serovars ◽  
The Impact ◽  
Phage Isolation ◽  
Salmonella Phage

The exploration of novel nonantibiotic interventions in the field, such as the use of bacteriophages, is necessary to avoid the presence of Salmonella. Bacteriophages are a group of viruses widely distributed in nature, strictly associated with the prokaryotic cell. Researchers have demonstrated the success of phage therapy in reducing Salmonella counts in poultry products. However, the impact that phage concentration in the environment may have against certain Salmonella serovars is not well understood. Therefore, the aim of this study was to assess Salmonella phage prevalence in commercial poultry farms in terms of the production type: layers or broilers. The most prevalent Salmonella serovars isolated in poultry production were used for phage isolation. Salmonella specific phages were isolated from 141 layer and broiler farms located in the Valencia region during 2019. Analysis of the samples revealed that 100% presented Salmonella phages, the most prevalent being against serovar S. Enteritidis (93%), followed by S. Virchow (59%), S. Typhimurium (55%), S. Infantis (52%) and S. Ohio (51%). These results indicate that poultry farms could represent an important source of Salmonella phages. Nevertheless, further studies are needed to assess the epidemiology of phages against other serovars present in other countries and their diversity from the point of view of molecular studies.

scholarly journals Improving the management of poultry production: Mobile application development and validation

2020 ◽  
Vol 9 (10) ◽  
pp. e4019108806
Author(s):  
Raquel Baracat Tosi Rodrigues da Silva ◽  
Irenilza de Alencar Nääs ◽  
Arilson José de Oliveira Júnior ◽  
João Gilberto Mendes dos Reis ◽  
Nilsa Duarte da Silva Lima ◽  
...  
Keyword(s):  
Mobile Application ◽  
Poultry Production ◽  
Application Development ◽  
Production Chain ◽  
Good Practices ◽  
Broiler Production ◽  
Good Production ◽  
The World ◽  
Production Practices ◽  
Development And Validation

The broiler production chain is productive, and chicken meat has achieved high export rates to several countries in the world. This study aimed to develop a mobile application that helps the producer to audit the issues of good production practices. The application was developed for Android and programmed in Java. For its development, questions were used, with different weights according to their importance for production. These questions were removed from the items that make up the manuals of good practices used in Brazil. A test was carried out with users to determine the possibility of using the application in the field. After answering all the questions, the user gets a score ranging from 5 to 1 (excellent to bad). It also indicates which questions they did agree with good practices. The test with users showed that the application was easy to understand and enabled users to make decisions that would improve broiler production.

scholarly journals Kelayakan Usaha Ayam Broiler (Studi pada Usaha Peternakan di Desa Cibinong)

2018 ◽  
Vol 33 (2) ◽  
pp. 96
Author(s):  
Elpawati Elpawati ◽  
Achmad Tjachja Nugraha ◽  
Ratu Shofiatina
Keyword(s):  
Small Scale ◽  
Selling Price ◽  
Poultry Production ◽  
Poultry Farm ◽  
Financial Feasibility ◽  
Positive Growth ◽  
Poultry Farms ◽  
Positive Growth Rate ◽  
Small Scale Farmers ◽  
The Many

<p>Indonesia poultry consumption has increased year by year, with the average positive growth rate of 4.6%. This situation can be a chance for both small and large scales of poultry farmers, considering that poultry consumption is increasing every year. The rate of poultry production in Gunung Sindur was correlated with the amount of the existing poultry farms. Romli Farm was a small scale poultry farm in Gunung Sindur, Bogor. This poultry farm, with no partnership, could independently survive amongst the many other existing farms. However, although the opportunities were wide open, this business was not always viable for the farmers because many of small-scale farmers could not be able either to increase the income or to carry on the business. This research aimed to study the income, financial feasibility (NPV, IRR, Net B/C Ratio, and PP), the BEP of Selling Price, and the BEP of Product in Romli Farm.</p>

scholarly journals Holistic Approaches to Reducing Salmonella Contamination in Poultry Industry

2021 ◽  
Vol 44 (1) ◽  
Author(s):  
Ummu Afiqah Abdul-Rahiman ◽  
Noordiana Nordin ◽  
Noor Azira Abdul-Mutalib ◽  
Maimunah Sanny
Keyword(s):  
Hazard Analysis ◽  
Monitoring Program ◽  
Published Data ◽  
Processing Plant ◽  
Poultry Production ◽  
Poultry Industry ◽  
Production Chain ◽  
Critical Control Points ◽  
Poultry Processing ◽  
And Control

Salmonella are widely found in the poultry industry, which subsequently may pose a risk to animal and human health. The aim of this review is to highlight strategies for the prevention and control of Salmonella at each stage in the poultry production chain by monitoring risks from the farm to the retailer. Among the primary approaches for control of Salmonella at the farm level includes the administration of synthetic and natural compounds to live chickens (vaccination and antibiotic), litter management as well as fortification of feed and acidification of drinking water. In the poultry processing plant, multiple hurdle technology and different chilling conditions to reduce Salmonella were discussed. In the retail level, an effective monitoring program to control Salmonella contamination by good manufacturing practices and hazard analysis and critical control points has been reviewed. Overall, we conclude that these approaches play a role in reducing the dissemination of Salmonella in the poultry industry. However, there is no published data related to logistic scheduling of poultry processing.

Detection of Campylobacter jejuni and Campylobacter coli from Broiler Chicken–Related Samples Using BAX PCR and Conventional International Organization for Standardization Culture

2008 ◽  
Vol 71 (4) ◽  
pp. 835-838 ◽  
Author(s):  
LISA K. WILLIAMS ◽  
ALISDAIR MCMEECHAN ◽  
TAMSIN BAALHAM ◽  
LAURA WARD ◽  
TOM J. HUMPHREY ◽  
...  
Keyword(s):  
Campylobacter Jejuni ◽  
Broiler Chicken ◽  
Culture Method ◽  
International Organization ◽  
Campylobacter Coli ◽  
Poultry Production ◽  
Production Chain ◽  
Enrichment Cultures ◽  
International Organization For Standardization ◽  
Campylobacter Spp

In this study, the conventional International Organization for Standardization (ISO) culture method was compared with the DuPont Qualicon BAX system, a high-throughput, rapid molecular assay that can be used to detect several bacterial species, including Campylobacter jejuni and Campylobacter coli in diverse sample types. Standard enrichment culture is a time-consuming process, taking up to 6 days to obtain a confirmed result. Rapid molecular assays have been developed that provide results within 24 h. Naturally contaminated samples from the poultry production chain were examined for the presence of Campylobacter spp. Samples from broiler chicken ceca (n = 100), fresh chicken carcass rinses (n = 60), and bootsocks (gauze sock walked through a broiler chicken house; n = 50) were enriched according to the ISO 10272 method in Bolton broth specifically designed to detect Campylobacter spp. in complex sample types. Samples were enriched without blood for use with the BAX system using the Campylobacter BAX kits for the detection of C. jejuni and C. coli. Samples also were directly plated onto modified charcoal cefperazone deoxycholate agar, and results were compared with those from the enriched samples for the ability to detect Campylobacter spp. Campylobacter spp. were isolated from 49% of samples with conventional enrichment cultures, from 48% with direct culture, from 68% with the BAX system and enrichment cultures, and from 62% with the BAX system used directly with samples. Overall, the BAX system detected more positive samples than did the conventional culture method and is an effective methodology for the rapid and reliable detection of Campylobacter spp. from diverse sample types.

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