scholarly journals Comprehensive Transcriptome Profiling Reveals Long Noncoding RNA Expression and Alternative Splicing Regulation during Fruit Development and Ripening in Kiwifruit (Actinidia chinensis)

2016 ◽  
Vol 7 ◽  
Author(s):  
Wei Tang ◽  
Yi Zheng ◽  
Jing Dong ◽  
Jia Yu ◽  
Junyang Yue ◽  
...  
Keyword(s):  
Alternative Splicing ◽  
Fruit Development ◽  
Long Noncoding Rna ◽  
Noncoding Rna ◽  
Transcriptome Profiling ◽  
Rna Expression ◽  
Splicing Regulation ◽  
Actinidia Chinensis ◽  
Fruit Development And Ripening

scholarly journals Transcriptome profiling by RNA-Seq reveals differentially expressed genes related to fruit development and ripening characteristics in strawberries (Fragaria×ananassa)

PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e4976 ◽  
Author(s):  
Panpan Hu ◽  
Gang Li ◽  
Xia Zhao ◽  
Fengli Zhao ◽  
Liangjie Li ◽  
...  
Keyword(s):  
Differentially Expressed Genes ◽  
Fruit Ripening ◽  
Fruit Development ◽  
Transcriptome Profiling ◽  
Differentially Expressed ◽  
Fragaria Ananassa ◽  
Mads Box ◽  
Cell Wall Modification ◽  
Ripening Process ◽  
Fruit Development And Ripening

Strawberry (Fragaria × ananassa) is an ideal plant for fruit development and ripening research due to the rapid substantial changes in fruit color, aroma, taste, and softening. To gain deeper insights into the genes that play a central regulatory role in strawberry fruit development and ripening characteristics, transcriptome profiling was performed for the large green fruit, white fruit, turning fruit, and red fruit stages of strawberry. A total of 6,608 differentially expressed genes (DEGs) with 2,643 up-regulated and 3,965 down-regulated genes were identified in the fruit development and ripening process. The DEGs related to fruit flavonoid biosynthesis, starch and sucrose biosynthesis, the citrate cycle, and cell-wall modification enzymes played important roles in the fruit development and ripening process. Particularly, some candidate genes related to the ubiquitin mediated proteolysis pathway and MADS-box were confirmed to be involved in fruit development and ripening according to their possible regulatory functions. A total of fiveubiquitin-conjugating enzymesand 10MADS-box transcription factorswere differentially expressed between the four fruit ripening stages. The expression levels of DEGs relating to color, aroma, taste, and softening of fruit were confirmed by quantitative real-time polymerase chain reaction. Our study provides important insights into the complicated regulatory mechanism underlying the fruit ripening characteristics inFragaria × ananassa.

Detection of Long Noncoding RNA Expression by

2021 ◽  
pp. 35-42
Author(s):  
Rui Huang ◽  
Yihao Wang ◽  
Yaqi Deng ◽  
Jianfeng Shen
Keyword(s):  
Long Noncoding Rna ◽  
Noncoding Rna ◽  
Rna Expression

scholarly journals Long noncoding RNA expression profile from cryptococcal meningitis patients identifies DPY19L1p1 as a new disease marker

2019 ◽  
Vol 25 (6) ◽  
pp. 772-782 ◽  
Author(s):  
Lei Zhang ◽  
Wen‐Jie Fang ◽  
Ke‐Ming Zhang ◽  
Wei‐Wei Jiang ◽  
Min Chen ◽  
...  
Keyword(s):  
Expression Profile ◽  
Cryptococcal Meningitis ◽  
Long Noncoding Rna ◽  
Noncoding Rna ◽  
Rna Expression ◽  
New Disease ◽  
Disease Marker

Methods to Study Long Noncoding RNA Expression and Dynamics in Zebrafish Using RNA Sequencing

2019 ◽  
pp. 77-110
Author(s):  
Samatha Mathew ◽  
Ambily Sivadas ◽  
Paras Sehgal ◽  
Kriti Kaushik ◽  
Shamsudheen K. Vellarikkal ◽  
...  
Keyword(s):  
Rna Sequencing ◽  
Long Noncoding Rna ◽  
Noncoding Rna ◽  
Rna Expression
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