2P047 Docking dynamics of MAP kinase : MEK1-ERK2 complex system studied by coarse-grained simulation(01B. Protein: Structure & Function,Poster)

Ryo Kanada; Shoji Takada

doi:10.2142/biophys.53.s166_5

2P047 Docking dynamics of MAP kinase : MEK1-ERK2 complex system studied by coarse-grained simulation(01B. Protein: Structure & Function,Poster)

Seibutsu Butsuri ◽

10.2142/biophys.53.s166_5 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S166

Author(s):

Ryo Kanada ◽

Shoji Takada

Keyword(s):

Complex System ◽

Protein Structure ◽

Structure Function ◽

Map Kinase ◽

Coarse Grained

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2P044 Comparative simulations of protein-ligand binding processes using the MARTINI coarse-grained force field(01B. Protein: Structure & Function,Poster)

Seibutsu Butsuri ◽

10.2142/biophys.53.s166_2 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S166

Author(s):

Tatsuki Negami ◽

Tohru Terada ◽

Kentaro Shimizu

Keyword(s):

Protein Structure ◽

Ligand Binding ◽

Force Field ◽

Structure Function ◽

Coarse Grained

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2P045 Coarse-grained model study of ligand-dependent reaction activity of PPARγ(01B. Protein: Structure & Function,Poster)

Seibutsu Butsuri ◽

10.2142/biophys.53.s166_3 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S166

Author(s):

Tomo Matsubara ◽

Hiraku Nishimori ◽

Akinori Awazu

Keyword(s):

Protein Structure ◽

Structure Function ◽

Coarse Grained ◽

Coarse Grained Model ◽

Model Study

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3P028 Interactions of MEK1 with ERK2 in mammalian MAPK pathway studied by coarse-grained molecular simulations(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s253_4 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S253

Author(s):

Ryo Kanada ◽

Shoji Takada

Keyword(s):

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Mapk Pathway ◽

Molecular Simulations ◽

Coarse Grained ◽

Biophysical Society

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3P027 Classification of Mechanical Communication in Proteins: A Coarse-Grained Study(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s253_3 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S253

Author(s):

Yuichi Togashi

Keyword(s):

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

Coarse Grained ◽

Biophysical Society

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2P046 Screening for Mechanical Communication in Proteins by Coarse-Grained Molecular Dynamics(01B. Protein: Structure & Function,Poster)

Seibutsu Butsuri ◽

10.2142/biophys.53.s166_4 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S166

Author(s):

Yuichi Togashi

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Structure Function ◽

Coarse Grained ◽

Coarse Grained Molecular Dynamics

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2P032 The factors determining protein-ligand binding processes revealed by comparative coarse-grained simulations(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s200_2 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S200

Author(s):

Tatsuki Negami ◽

Tohru Terada ◽

Kentaro Shimizu

Keyword(s):

Protein Structure ◽

Ligand Binding ◽

Structure Function ◽

Annual Meeting ◽

Coarse Grained ◽

Biophysical Society ◽

Coarse Grained Simulations

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3P022 Coarse-grained Generalized Born and surface area models and its application to protein docking(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s252_4 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S252

Author(s):

Le Chang ◽

Wenfei Li ◽

Naoto Hori ◽

Shoji Takada

Keyword(s):

Protein Structure ◽

Structure Function ◽

Surface Area ◽

Annual Meeting ◽

Protein Docking ◽

Coarse Grained ◽

Generalized Born ◽

Biophysical Society

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ESCASA : Analytical estimation of atomic coordinates from coarse‐grained geometry for nuclear‐magnetic‐resonance ‐assisted protein structure modeling. I. Backbone and H β protons

Journal of Computational Chemistry ◽

10.1002/jcc.26695 ◽

2021 ◽

Author(s):

Emilia A. Lubecka ◽

Adam Liwo

Keyword(s):

Nuclear Magnetic Resonance ◽

Protein Structure ◽

Magnetic Resonance ◽

Coarse Grained ◽

Structure Modeling ◽

Protein Structure Modeling ◽

Analytical Estimation ◽

Atomic Coordinates ◽

Nuclear Magnetic

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Clusters in ?/? barrel proteins: Implications for protein structure, function, and folding: A graph theoretical approach

Proteins Structure Function and Bioinformatics ◽

10.1002/1097-0134(20010501)43:2<103::aid-prot1022>3.0.co;2-x ◽

2001 ◽

Vol 43 (2) ◽

pp. 103-112 ◽

Cited By ~ 24

Author(s):

N. Kannan ◽

S. Selvaraj ◽

M. Michael Gromiha ◽

S. Vishveshwara

Keyword(s):

Protein Structure ◽

Structure Function ◽

Theoretical Approach ◽

Graph Theoretical Approach

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Lanthanide-Protein Interactions and their Use in Determination of Protein Structure, Function, and Dynamics

Analytical Chemistry Letters ◽

10.1080/22297928.2021.1890638 ◽

2021 ◽

Vol 11 (3) ◽

pp. 315-342

Author(s):

Harsha E. Rajapakse ◽

Marni Goldstein

Keyword(s):

Protein Structure ◽

Structure Function ◽

Protein Interactions

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